Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Reverse (-)

56251581 .. 56264256

Gene Structure 12676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG343700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 715 bp

ATGGTCCGCCGGAATTGTGAGCTCGGAGAGTTGTGGTTCGCCGTCTCTGATTCCAAGCATCGTCGCTACGCGAAGAAGAACTCCCAAGCTCAGTCGATGATGCTCGGCCTCTGGAAGGACTTTCCGACCATGCTCCACCACAAGGTCTACAGATTCTCAATGTCGCCGATTGGAGCTACTTTCCCTCTCAACTCAAACCCTAGCCCCTCCTCCTCTTGTCTCACAGCTCGCCTGAGGCTACTGAATGCGATCATGGCCGACGTCGCCACCCTGTCGTGTGCTCGTTGCAGCAAATCCGCCAATCTTCAGTGTCCCAAGTATGTGGAATTGAAGCTTCCTCATGAAGATGCCGCTTTCTGGGCTGTTTGGATATCTCTGGGAGGTAGGCTTGGGTTCGCTTTGGAAGAGGTGTGTGTCGAGATTGTGATCAAGTTTAGTCTCGGTAAAAAGAAGTTTGATGGGTCTAGGCCATCTGCAACGTTCAGTAAGTTTCTGCTTCTGTTTTTGGGGAAAGTGAAACAGATTGTTGGGTCGACGCTTTCGGATTCTAAGGAAGATGGGCTGGCTCTGGTTACCAATTTTGTGTCAGATAAGTCGGCGGGGGAGTATGCAAAGATGTATAAGGAAGATGGGCTTACAGGTGGCCATGTGATAATGCTGGGGGCAGATCCTTTGAGTAGAGCTGCTGCCATTGAAGCTCTGCATGCCTATTCTG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

238

Amino Acids

26.18

Weight (kDa)

9.28

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	264
AccI	GTMKAC	2 cut(s)	147, 533
AccII	CGCG	1 cut(s)	71
AciI	CCGC	4 cut(s)	7, 297, 351, 599
AclI	AACGTT	1 cut(s)	479
AclWI	GGATC	1 cut(s)	662
AcoI	YGGCCR	2 cut(s)	255, 643
AcuI	CTGAAG	1 cut(s)	290
AcyI	GRCGYC	1 cut(s)	261
AfiI	CCNNNNNNNGG	3 cut(s)	115, 142, 357
AgsI	TTSAA	2 cut(s)	331, 695
AluBI	AGCT	7 cut(s)	22, 89, 176, 227, 334, 683, 698
AluI	AGCT	7 cut(s)	22, 89, 176, 227, 334, 683, 698
Alw21I	GWGCWC	2 cut(s)	24, 283
Alw26I	GTCTC	3 cut(s)	49, 224, 443
AlwI	GGATC	1 cut(s)	662
AoxI	GGCC	4 cut(s)	106, 255, 467, 643
ApeKI	GCWGC	3 cut(s)	288, 683, 686
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	645
BanII	GRGCYC	1 cut(s)	24
Bbv12I	GWGCWC	2 cut(s)	24, 283
BbvI	GCAGC	3 cut(s)	300, 670, 673
BccI	CCATC	4 cut(s)	452, 478, 551, 623
BceAI	ACGGC	1 cut(s)	26
BclI	TGATCA	1 cut(s)	426
BcoDI	GTCTC	3 cut(s)	49, 224, 443
BfaI	CTAG	2 cut(s)	201, 465
BfmI	CTRYAG	1 cut(s)	148
BisI	GCNGC	4 cut(s)	289, 351, 684, 687
BlsI	GCNGC	4 cut(s)	290, 352, 685, 688
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmsI	GCATC	3 cut(s)	67, 90, 337
BsaBI	GATNNNNATC	1 cut(s)	425
BsaHI	GRCGYC	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 142, 357
Bse21I	CCTNAGG	1 cut(s)	233
Bse8I	GATNNNNATC	1 cut(s)	425
BseJI	GATNNNNATC	1 cut(s)	425
BseLI	CCNNNNNNNGG	3 cut(s)	115, 142, 357
BseMII	CTCAG	2 cut(s)	104, 224
BseRI	GAGGAG	2 cut(s)	199, 202
BseXI	GCAGC	3 cut(s)	300, 670, 673
BseYI	CCCAGC	1 cut(s)	658
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	4 cut(s)	108, 257, 469, 645
BsiHKAI	GWGCWC	2 cut(s)	24, 283
BsiSI	CCGG	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	297
BslI	CCNNNNNNNGG	3 cut(s)	115, 142, 357
BsmAI	GTCTC	3 cut(s)	49, 224, 443
BsmBI	CGTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	297
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	4 cut(s)	108, 257, 469, 645
Bsp1286I	GDGCHC	2 cut(s)	24, 283
Bsp143I	GATC	3 cut(s)	249, 426, 667
BspACI	CCGC	4 cut(s)	7, 297, 351, 599
BspANI	GGCC	4 cut(s)	108, 257, 469, 645
BspCNI	CTCAG	2 cut(s)	103, 225
BspFNI	CGCG	1 cut(s)	71
BspHI	TCATGA	1 cut(s)	340
BspPI	GGATC	1 cut(s)	662
BssMI	GATC	3 cut(s)	249, 426, 667
BssNI	GRCGYC	1 cut(s)	261
Bst6I	CTCTTC	1 cut(s)	399
BstACI	GRCGYC	1 cut(s)	261
BstC8I	GCNNGC	3 cut(s)	229, 564, 705
BstDEI	CTNAG	3 cut(s)	90, 233, 549
BstEII	GGTNACC	1 cut(s)	571
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstFNI	CGCG	1 cut(s)	71
BstKTI	GATC	3 cut(s)	252, 429, 670
BstMAI	GTCTC	3 cut(s)	49, 224, 443
BstMBI	GATC	3 cut(s)	249, 426, 667
BstMWI	GCNNNNNNNGC	5 cut(s)	254, 263, 359, 695, 704
BstNSI	RCATGY	1 cut(s)	707
BstPI	GGTNACC	1 cut(s)	571
BstSFI	CTRYAG	1 cut(s)	148
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	3 cut(s)	300, 670, 673
BstX2I	RGATCY	1 cut(s)	667
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	667
Bsu36I	CCTNAGG	1 cut(s)	233
BsuRI	GGCC	4 cut(s)	108, 257, 469, 645
BtsIMutI	CAGTG	1 cut(s)	314
Cac8I	GCNNGC	3 cut(s)	229, 564, 705
CciI	TCATGA	1 cut(s)	340
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	544
CviAII	CATG	5 cut(s)	130, 253, 341, 647, 704
DdeI	CTNAG	3 cut(s)	90, 233, 549
DpnI	GATC	3 cut(s)	251, 428, 669
DpnII	GATC	3 cut(s)	249, 426, 667
EaeI	YGGCCR	2 cut(s)	255, 643
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
EciI	GGCGGA	1 cut(s)	286
Ecl136II	GAGCTC	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	24
Eco32I	GATATC	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	290
Eco81I	CCTNAGG	1 cut(s)	233
Eco91I	GGTNACC	1 cut(s)	571
EcoICRI	GAGCTC	1 cut(s)	22
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoO65I	GGTNACC	1 cut(s)	571
EcoRV	GATATC	1 cut(s)	372
EcoT38I	GRGCYC	1 cut(s)	24
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	5 cut(s)	133, 256, 344, 650, 707
FaiI	YATR	8 cut(s)	131, 254, 321, 342, 609, 621, 648, 705
FalI	AAGNNNNNCTT	2 cut(s)	618, 650
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	5 cut(s)	129, 252, 340, 646, 703
FauI	CCCGC	1 cut(s)	592
FbaI	TGATCA	1 cut(s)	426
FblI	GTMKAC	2 cut(s)	147, 533
Fnu4HI	GCNGC	4 cut(s)	289, 351, 684, 687
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	4 cut(s)	289, 351, 684, 687
FspBI	CTAG	2 cut(s)	201, 465
GluI	GCNGC	4 cut(s)	289, 351, 684, 687
GsaI	CCCAGC	1 cut(s)	662
HaeIII	GGCC	4 cut(s)	108, 257, 469, 645
HapII	CCGG	1 cut(s)	10
HgaI	GACGC	1 cut(s)	544
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	5 cut(s)	133, 256, 344, 650, 707
HincII	GTYRAC	1 cut(s)	534
HindII	GTYRAC	1 cut(s)	534
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	3 cut(s)	50, 153, 545
HpaII	CCGG	1 cut(s)	10
Hpy166II	GTNNAC	2 cut(s)	148, 534
Hpy188I	TCNGA	5 cut(s)	26, 49, 126, 544, 589
Hpy188III	TCNNGA	3 cut(s)	112, 341, 418
Hpy8I	GTNNAC	2 cut(s)	148, 534
Hpy99I	CGWCG	4 cut(s)	66, 263, 266, 538
HpyAV	CCTTC	1 cut(s)	109
HpyCH4IV	ACGT	2 cut(s)	261, 479
HpyCH4V	TGCA	4 cut(s)	288, 476, 611, 703
HpyF10VI	GCNNNNNNNGC	5 cut(s)	254, 263, 359, 695, 704
HpyF3I	CTNAG	3 cut(s)	90, 233, 549
HpySE526I	ACGT	2 cut(s)	261, 479
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	5 cut(s)	133, 256, 344, 650, 707
Ksp22I	TGATCA	1 cut(s)	426
Kzo9I	GATC	3 cut(s)	249, 426, 667
LmnI	GCTCC	2 cut(s)	138, 173
Lsp1109I	GCAGC	3 cut(s)	300, 670, 673
LweI	GCATC	3 cut(s)	67, 90, 337
MaeI	CTAG	2 cut(s)	201, 465
MaeII	ACGT	2 cut(s)	261, 479
MaeIII	GTNAC	1 cut(s)	571
MalI	GATC	3 cut(s)	251, 428, 669
MboI	GATC	3 cut(s)	249, 426, 667
MboII	GAAGA	7 cut(s)	85, 88, 296, 356, 416, 566, 638
MflI	RGATCY	1 cut(s)	667
MhlI	GDGCHC	2 cut(s)	24, 283
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	3 cut(s)	13, 326, 577
MluNI	TGGCCA	1 cut(s)	645
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	9 cut(s)	119, 195, 217, 220, 223, 228, 348, 374, 400
Mox20I	TGGCCA	1 cut(s)	645
MscI	TGGCCA	1 cut(s)	645
MslI	CAYNNNNRTG	1 cut(s)	345
Msp20I	TGGCCA	1 cut(s)	645
MspI	CCGG	1 cut(s)	10
Mva1269I	GAATGC	1 cut(s)	250
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	5 cut(s)	254, 263, 359, 695, 704
NdeII	GATC	3 cut(s)	249, 426, 667
NlaIII	CATG	5 cut(s)	133, 256, 344, 650, 707
NmeAIII	GCCGAG	1 cut(s)	84
NspI	RCATGY	1 cut(s)	707
PaeI	GCATGC	1 cut(s)	707
PagI	TCATGA	1 cut(s)	340
PctI	GAATGC	1 cut(s)	250
PfeI	GAWTC	3 cut(s)	50, 153, 545
PkrI	GCNGC	4 cut(s)	290, 352, 685, 688
Psp124BI	GAGCTC	1 cut(s)	24
Psp1406I	AACGTT	1 cut(s)	479
PspEI	GGTNACC	1 cut(s)	571
PspFI	CCCAGC	1 cut(s)	658
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	667
RseI	CAYNNNNRTG	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	24
SalI	GTCGAC	1 cut(s)	532
SatI	GCNGC	4 cut(s)	289, 351, 684, 687
Sau3AI	GATC	3 cut(s)	249, 426, 667
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	2 cut(s)	24, 283
SfaNI	GCATC	3 cut(s)	67, 90, 337
SfcI	CTRYAG	1 cut(s)	148
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	345
SphI	GCATGC	1 cut(s)	707
Sse9I	AATT	3 cut(s)	13, 326, 577
SsiI	CCGC	4 cut(s)	7, 297, 351, 599
SspMI	CTAG	2 cut(s)	201, 465
SstI	GAGCTC	1 cut(s)	24
TaiI	ACGT	2 cut(s)	264, 482
TaqI	TCGA	3 cut(s)	95, 417, 533
TasI	AATT	3 cut(s)	13, 326, 577
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	3 cut(s)	50, 153, 545
TscAI	CASTG	1 cut(s)	314
TseI	GCWGC	3 cut(s)	288, 683, 686
TspDTI	ATGAA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	113
XceI	RCATGY	1 cut(s)	707
XmiI	GTMKAC	2 cut(s)	147, 533
XspI	CTAG	2 cut(s)	201, 465
ZraI	GACGTC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.