Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Forward (+)

24114488 .. 24115390

Gene Structure 903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG241500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGGCCAGCTCTGGTTACCAATTTCGAGTCAGCTCGAGTCAGATAAGTCGGCGGGGGAGTATGCAAAGATGTATAAGGAAGATGGGCTTACAGGGGGCCATGTTATAATGCTGGGGGCAGATCCTTTGAGTAGAGCTGCGGCCATTGAAGCTCTGCATGCCTATTCTGGTGGTTTGCAAGTAGGAGGTGGGATCAATTCAGATAATTCTTTGCAATACATAGAAGAAGGGGCTAGCCATGTCATTGTCACTTCTTATGTATTTAATAATGGGCAAATGGACCTTGAAAGGCTTAAAGATCTTGTTCATGTTGTTGGAAAAGAAAGGCTTGTTTTAGACCTTAGCTGTAGAAAGAGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

120

Amino Acids

12.99

Weight (kDa)

5.47

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_biosynth	PF00977	12 - 118	2.6e-09	Histidine biosynthesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	107
AciI	CCGC	2 cut(s)	53, 140
AclWI	GGATC	2 cut(s)	116, 200
AcoI	YGGCCR	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	149, 287
AluBI	AGCT	5 cut(s)	10, 34, 137, 152, 345
AluI	AGCT	5 cut(s)	10, 34, 137, 152, 345
AlwI	GGATC	2 cut(s)	116, 200
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	3 cut(s)	4, 97, 141
ApeKI	GCWGC	1 cut(s)	137
AspS9I	GGNCC	3 cut(s)	4, 97, 280
AsuNHI	GCTAGC	1 cut(s)	233
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	280
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	346
BglII	AGATCT	1 cut(s)	298
BisI	GCNGC	2 cut(s)	138, 141
BlsI	GCNGC	2 cut(s)	139, 142
Bme18I	GGWCC	1 cut(s)	280
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	3 cut(s)	4, 97, 280
BmiI	GGNNCC	1 cut(s)	98
BmtI	GCTAGC	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	124
BseYI	CCCAGC	1 cut(s)	112
BshFI	GGCC	3 cut(s)	6, 99, 143
BsiHKCI	CYCGRG	1 cut(s)	35
BsnI	GGCC	3 cut(s)	6, 99, 143
BsoBI	CYCGRG	1 cut(s)	35
Bsp143I	GATC	3 cut(s)	121, 192, 298
BspACI	CCGC	2 cut(s)	53, 140
BspANI	GGCC	3 cut(s)	6, 99, 143
BspLI	GGNNCC	1 cut(s)	98
BspOI	GCTAGC	1 cut(s)	237
BspPI	GGATC	2 cut(s)	116, 200
BssMI	GATC	3 cut(s)	121, 192, 298
BstC8I	GCNNGC	3 cut(s)	8, 159, 235
BstDEI	CTNAG	1 cut(s)	341
BstEII	GGTNACC	1 cut(s)	15
BstKTI	GATC	3 cut(s)	124, 195, 301
BstMBI	GATC	3 cut(s)	121, 192, 298
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 158
BstNSI	RCATGY	1 cut(s)	161
BstPI	GGTNACC	1 cut(s)	15
BstSFI	CTRYAG	1 cut(s)	346
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	2 cut(s)	121, 298
BstYI	RGATCY	2 cut(s)	121, 298
BsuRI	GGCC	3 cut(s)	6, 99, 143
Cac8I	GCNNGC	3 cut(s)	8, 159, 235
Cfr13I	GGNCC	3 cut(s)	4, 97, 280
CviAII	CATG	4 cut(s)	101, 158, 239, 308
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	3 cut(s)	123, 194, 300
DpnII	GATC	3 cut(s)	121, 192, 298
EaeI	YGGCCR	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	280
Eco88I	CYCGRG	1 cut(s)	35
Eco91I	GGTNACC	1 cut(s)	15
EcoO65I	GGTNACC	1 cut(s)	15
FaeI	CATG	4 cut(s)	104, 161, 242, 311
FalI	AAGNNNNNCTT	4 cut(s)	72, 104, 312, 344
FatI	CATG	4 cut(s)	100, 157, 238, 307
FauI	CCCGC	1 cut(s)	46
Fnu4HI	GCNGC	2 cut(s)	138, 141
Fsp4HI	GCNGC	2 cut(s)	138, 141
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	2 cut(s)	138, 141
GsaI	CCCAGC	1 cut(s)	116
HaeIII	GGCC	3 cut(s)	6, 99, 143
Hin1II	CATG	4 cut(s)	104, 161, 242, 311
HinfI	GANTC	2 cut(s)	28, 38
Hpy188I	TCNGA	2 cut(s)	43, 202
HpyAV	CCTTC	1 cut(s)	221
HpyCH4V	TGCA	4 cut(s)	65, 157, 178, 214
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 158
HpyF3I	CTNAG	1 cut(s)	341
Hsp92II	CATG	4 cut(s)	104, 161, 242, 311
Kzo9I	GATC	3 cut(s)	121, 192, 298
LpnPI	CCDG	4 cut(s)	20, 78, 98, 153
Lsp1109I	GCAGC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	234
MaeIII	GTNAC	2 cut(s)	15, 247
MalI	GATC	3 cut(s)	123, 194, 300
MboI	GATC	3 cut(s)	121, 192, 298
MboII	GAAGA	2 cut(s)	92, 236
MflI	RGATCY	2 cut(s)	121, 298
MluCI	AATT	3 cut(s)	21, 196, 205
MlyI	GAGTC	2 cut(s)	37, 47
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	2 cut(s)	179, 348
MseI	TTAA	2 cut(s)	264, 294
MwoI	GCNNNNNNNGC	2 cut(s)	149, 158
NdeII	GATC	3 cut(s)	121, 192, 298
NheI	GCTAGC	1 cut(s)	233
NlaIII	CATG	4 cut(s)	104, 161, 242, 311
NlaIV	GGNNCC	1 cut(s)	98
NmuCI	GTSAC	1 cut(s)	247
NspI	RCATGY	1 cut(s)	161
PaeI	GCATGC	1 cut(s)	161
PaeR7I	CTCGAG	1 cut(s)	35
PkrI	GCNGC	2 cut(s)	139, 142
PleI	GAGTC	2 cut(s)	36, 46
PpsI	GAGTC	2 cut(s)	36, 46
PsiI	TTATAA	1 cut(s)	107
PspEI	GGTNACC	1 cut(s)	15
PspFI	CCCAGC	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	98
PspPI	GGNCC	3 cut(s)	4, 97, 280
PspXI	VCTCGAGB	1 cut(s)	35
PsuI	RGATCY	2 cut(s)	121, 298
SaqAI	TTAA	2 cut(s)	264, 294
SatI	GCNGC	2 cut(s)	138, 141
Sau3AI	GATC	3 cut(s)	121, 192, 298
Sau96I	GGNCC	3 cut(s)	4, 97, 280
SchI	GAGTC	2 cut(s)	37, 47
SetI	ASST	8 cut(s)	12, 36, 139, 154, 190, 285, 342, 347
SfcI	CTRYAG	1 cut(s)	346
Sfr274I	CTCGAG	1 cut(s)	35
SinI	GGWCC	1 cut(s)	280
SlaI	CTCGAG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
SphI	GCATGC	1 cut(s)	161
Sse9I	AATT	3 cut(s)	21, 196, 205
SsiI	CCGC	2 cut(s)	53, 140
SspMI	CTAG	1 cut(s)	234
TaqI	TCGA	2 cut(s)	26, 36
TasI	AATT	3 cut(s)	21, 196, 205
TauI	GCSGC	1 cut(s)	143
Tru1I	TTAA	2 cut(s)	264, 294
Tru9I	TTAA	2 cut(s)	264, 294
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	280
XceI	RCATGY	1 cut(s)	161
XhoI	CTCGAG	1 cut(s)	35
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.