Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Reverse (-)

34432932 .. 34436656

Gene Structure 3725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00355640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGGACCTTGAAAGGCTTAAAGATCTTGTTCATGTTGTTGGAAAAGAAAGGCTTGTTTTAGACCTTAGCTGTAGAAAGAGGTGGGCGGTAAAGACGTGCAAATCATATAGCCAAGCTCAAATTGACGAGGTGCGCATTGAAGTGGCTGATTATATACAGAGTTGGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

56

Amino Acids

6.62

Weight (kDa)

7.79

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	134
AciI	CCGC	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	11, 140
AjiI	CACGTC	1 cut(s)	96
AluBI	AGCT	2 cut(s)	69, 116
AluI	AGCT	2 cut(s)	69, 116
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
BfmI	CTRYAG	1 cut(s)	70
BglII	AGATCT	1 cut(s)	22
Bme18I	GGWCC	1 cut(s)	4
BmgBI	CACGTC	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	4
Bpu10I	CCTNAGC	1 cut(s)	65
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	1 cut(s)	86
BssMI	GATC	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BtrI	CACGTC	1 cut(s)	96
CfoI	GCGC	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	6 cut(s)	16, 52, 69, 111, 116, 146
CviKI_1	RGCY	6 cut(s)	16, 52, 69, 111, 116, 146
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	4
FaeI	CATG	1 cut(s)	35
FaiI	YATR	5 cut(s)	33, 106, 108, 153, 155
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FatI	CATG	1 cut(s)	31
FspAI	RTGCGCAY	1 cut(s)	134
FspI	TGCGCA	1 cut(s)	134
GlaI	GCGC	1 cut(s)	134
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	35
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	1 cut(s)	99
HpyF3I	CTNAG	1 cut(s)	65
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	1 cut(s)	35
HspAI	GCGC	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	22
MaeII	ACGT	1 cut(s)	95
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MflI	RGATCY	1 cut(s)	22
MluCI	AATT	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	2 cut(s)	72, 121
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	140
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	1 cut(s)	35
NsbI	TGCGCA	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	18
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	1 cut(s)	4
SetI	ASST	7 cut(s)	9, 66, 71, 83, 98, 118, 132
SfcI	CTRYAG	1 cut(s)	70
SgeI	CNNG	7 cut(s)	20, 38, 44, 65, 108, 125, 139
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	120
SsiI	CCGC	1 cut(s)	86
TaiI	ACGT	1 cut(s)	98
TasI	AATT	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TspDTI	ATGAA	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.