Rorug06G0225600

Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
36201491 .. 36201670
180 bp
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UTR
Exon/CDS
Intron
Rorug06G0225600.1

Sequence Viewer

Length: 180 bp
ATGCACGCGCTGACAGAACTAGAGACTGCGTTTCACGTTCTAGATCATGACAGAGAATTTGTGAAGGAGTTGAATGAGATTTTGAGGGACCATGTTGGTAGGGAGACTCCTCTCTATTTTGCGGAAAGGCTAACTGAACATTACAAACGTCCAAATGGTGAAGGCCTCGCATTTACTTGA

Protein Analysis

59

Amino Acids

6.99

Weight (kDa)

5.4

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 8
AciI CCGC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 56
AgsI TTSAA 1 cut(s) 73
Alw26I GTCTC 2 cut(s) 17, 98
AoxI GGCC 1 cut(s) 163
ApoI RAATTY 1 cut(s) 56
ArsI GACNNNNNNTTYG 2 cut(s) 41, 73
AspLEI GCGC 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 170
AvaII GGWCC 1 cut(s) 88
BcoDI GTCTC 2 cut(s) 17, 98
BfaI CTAG 2 cut(s) 20, 41
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 89
BseRI GAGGAG 1 cut(s) 99
Bsh1236I CGCG 1 cut(s) 8
BshFI GGCC 1 cut(s) 165
BslFI GGGAC 1 cut(s) 101
BsmAI GTCTC 2 cut(s) 17, 98
BsmFI GGGAC 1 cut(s) 101
BsnI GGCC 1 cut(s) 165
Bsp143I GATC 1 cut(s) 43
BspACI CCGC 1 cut(s) 122
BspANI GGCC 1 cut(s) 165
BspFNI CGCG 1 cut(s) 8
BspHI TCATGA 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 89
BssMI GATC 1 cut(s) 43
BstC8I GCNNGC 1 cut(s) 6
BstFNI CGCG 1 cut(s) 8
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 1 cut(s) 46
BstMAI GTCTC 2 cut(s) 17, 98
BstMBI GATC 1 cut(s) 43
BstUI CGCG 1 cut(s) 8
BsuRI GGCC 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 6
CciI TCATGA 1 cut(s) 46
CfoI GCGC 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 88
CviAII CATG 2 cut(s) 47, 92
CviJI RGCY 2 cut(s) 130, 165
CviKI_1 RGCY 2 cut(s) 130, 165
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Eco147I AGGCCT 1 cut(s) 165
Eco47I GGWCC 1 cut(s) 88
FaeI CATG 2 cut(s) 50, 95
FaiI YATR 2 cut(s) 48, 93
FaqI GGGAC 1 cut(s) 101
FatI CATG 2 cut(s) 46, 91
FspBI CTAG 2 cut(s) 20, 41
GlaI GCGC 1 cut(s) 9
HaeIII GGCC 1 cut(s) 165
HhaI GCGC 1 cut(s) 10
Hin1II CATG 2 cut(s) 50, 95
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HinfI GANTC 1 cut(s) 106
HphI GGTGA 1 cut(s) 170
Hpy188III TCNNGA 2 cut(s) 41, 47
HpyAV CCTTC 2 cut(s) 58, 155
HpyCH4IV ACGT 2 cut(s) 36, 148
HpyCH4V TGCA 1 cut(s) 4
HpySE526I ACGT 2 cut(s) 36, 148
Hsp92II CATG 2 cut(s) 50, 95
HspAI GCGC 1 cut(s) 8
Kzo9I GATC 1 cut(s) 43
MaeI CTAG 2 cut(s) 20, 41
MaeII ACGT 2 cut(s) 36, 148
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MluCI AATT 1 cut(s) 56
MlyI GAGTC 1 cut(s) 100
MnlI CCTC 3 cut(s) 78, 120, 176
MvnI CGCG 1 cut(s) 8
NdeII GATC 1 cut(s) 43
NlaIII CATG 2 cut(s) 50, 95
NlaIV GGNNCC 1 cut(s) 89
PagI TCATGA 1 cut(s) 46
PceI AGGCCT 1 cut(s) 165
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 88
Sau3AI GATC 1 cut(s) 43
Sau96I GGNCC 1 cut(s) 88
SchI GAGTC 1 cut(s) 100
SetI ASST 2 cut(s) 39, 151
SgeI CNNG 7 cut(s) 17, 19, 32, 47, 53, 59, 104
SinI GGWCC 1 cut(s) 88
Sse9I AATT 1 cut(s) 56
SseBI AGGCCT 1 cut(s) 165
SsiI CCGC 1 cut(s) 122
SspMI CTAG 2 cut(s) 20, 41
StuI AGGCCT 1 cut(s) 165
TaiI ACGT 2 cut(s) 39, 151
TasI AATT 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 88
XapI RAATTY 1 cut(s) 56
XbaI TCTAGA 1 cut(s) 40
XspI CTAG 2 cut(s) 20, 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.