Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000857

Physical Location & Seq

Genomic Coordinates Forward (+)

55261570 .. 55280904

Gene Structure 19335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00260940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGACTATTCCTGTTCTTTATCCGTGTCATCAGAAGCTTCGCTCTATGCTTGAATGTTGGCAGAAACTTGGGGACTCTGATCTCAAAGCACACTCTTCCAGTGGTGTAAAATTTAGTGTGCTATCATACAATGTTCATGCTAATCTTTATACTGATCATGGTAGGAACCCTTACTACCCAGAATGGGCTGGGGCGTGGTTCGAAGCGAACGTCCGCAACCCGGAAAAAGTGCCGACGTCGCTCCTCCGGTCACGATCGAGCGGCGACGAGCTGCGTTTCGTTGTCGGACGAAACCAGGGCCACGACGTGGAGCAGTTCAAAAGCGGGCTGGACTTGTCGGTGAAGGAGCTCACGAATTCACCTGCCAATGTTCTCACACCTGCTGTTGAAATCACAGAGCAAGGATCAGACGGTGATGGAGCCTGCGGGGATGACGTCGATGGGGGAGTAGTAACAGGGACAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos zf-C6H2

Protein Analysis

155

Amino Acids

16.9

Weight (kDa)

5.27

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36230
fragaria_vesca	FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790 FvH4_6g18790
malus_domestica	MD12G1036500.v1.1 MD14G1023300.v1.1
prunus_persica	Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1 Prupe.7G109700_v2.0.a1
pyrus_communis	pycom12g02400 pycom14g02220 pycom14g02230
rosa_chinensis	RchiOBHm_Chr1g0324901 RchiOBHm_Chr1g0350151 RchiOBHm_Chr3g0473801 RchiOBHm_Chr4g0393091 RchiOBHm_Chr4g0409701 RchiOBHm_Chr5g0027171
rosa_laevigata	RLG00000014193 RLG00000023983 RLG00000035737
rosa_multiflora	Rmu_sc0001207.1_g000028 Rmu_sc0002986.1_g000013 Rmu_sc0007035.1_g000005 Rmu_sc0016122.1_g000001 Rmu_sc0037919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029230 Rroxscaffold_1G00029310 Rroxscaffold_2G00114250 Rroxscaffold_3G00260930 Rroxscaffold_3G00260940 Rroxscaffold_4G00311820 Rroxscaffold_4G00332560 Rroxscaffold_5G00338520 Rroxscaffold_5G00355640 Rroxscaffold_6G00407790
rosa_rugosa	Rorug01G0107500 Rorug02G0045900 Rorug03G0135600 Rorug06G0225600 Rorug07G0319400 Rorug07G0330900
rosa_samantha	Rh1AG080400 Rh1AG119900 Rh1AG120000 Rh1AG233100 Rh1CG115000 Rh1CG217700 Rh2BG241500 Rh2BG353000 Rh2DG556200 Rh3AG186100 Rh3AG202300 Rh3BG214400 Rh3CG211200 Rh3DG210400 Rh3DG227900 Rh5AG343700 Rh5DG191000
rosa_wichuraiana	Rw1G018100 Rw3G017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	370, 388
AatII	GACGTC	2 cut(s)	239, 438
Acc36I	ACCTGC	2 cut(s)	370, 388
AccB7I	CCANNNNNTGG	1 cut(s)	307
AccBSI	CCGCTC	1 cut(s)	261
AciI	CCGC	4 cut(s)	214, 261, 324, 426
AclWI	GGATC	1 cut(s)	412
AcsI	RAATTY	2 cut(s)	110, 355
AcyI	GRCGYC	2 cut(s)	236, 435
AdeI	CACNNNGTG	1 cut(s)	307
AfiI	CCNNNNNNNGG	3 cut(s)	184, 220, 307
AgsI	TTSAA	3 cut(s)	53, 319, 389
AjiI	CACGTC	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	3 cut(s)	37, 271, 349
AluI	AGCT	3 cut(s)	37, 271, 349
Alw21I	GWGCWC	1 cut(s)	351
AlwI	GGATC	1 cut(s)	412
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	271
ApoI	RAATTY	2 cut(s)	110, 355
ArsI	GACNNNNNNTTYG	2 cut(s)	195, 227
AspS9I	GGNCC	1 cut(s)	298
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	3 cut(s)	351, 352, 425
AsuII	TTCGAA	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	258
BccI	CCATC	2 cut(s)	410, 434
BciT130I	CCWGG	1 cut(s)	296
BclI	TGATCA	1 cut(s)	154
BcnI	CCSGG	1 cut(s)	221
BfuAI	ACCTGC	2 cut(s)	370, 388
BisI	GCNGC	2 cut(s)	262, 272
BlsI	GCNGC	2 cut(s)	263, 273
Bme1390I	CCNGG	2 cut(s)	221, 296
BmgBI	CACGTC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	2 cut(s)	167, 421
BmrFI	CCNGG	2 cut(s)	221, 296
Bpu14I	TTCGAA	1 cut(s)	201
BpuMI	CCSGG	1 cut(s)	221
BsaHI	GRCGYC	2 cut(s)	236, 435
BsaJI	CCNNGG	1 cut(s)	295
BsaWI	WCCGGW	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 220, 307
Bse1I	ACTGG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	3 cut(s)	184, 220, 307
BseNI	ACTGG	1 cut(s)	99
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	258
BseYI	CCCAGC	1 cut(s)	188
Bsh1285I	CGRYCG	1 cut(s)	257
BshFI	GGCC	1 cut(s)	300
BsiEI	CGRYCG	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	2 cut(s)	221, 247
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	3 cut(s)	184, 220, 307
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	300
Bsp119I	TTCGAA	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	4 cut(s)	79, 154, 254, 404
BspACI	CCGC	4 cut(s)	214, 261, 324, 426
BspANI	GGCC	1 cut(s)	300
BspLI	GGNNCC	2 cut(s)	167, 421
BspMI	ACCTGC	2 cut(s)	370, 388
BspPI	GGATC	1 cut(s)	412
BspT104I	TTCGAA	1 cut(s)	201
BsrBI	CCGCTC	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	4 cut(s)	79, 154, 254, 404
BssNI	GRCGYC	2 cut(s)	236, 435
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	413
Bst6I	CTCTTC	1 cut(s)	100
BstACI	GRCGYC	2 cut(s)	236, 435
BstBI	TTCGAA	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	326, 424
BstF5I	GGATG	1 cut(s)	436
BstKTI	GATC	4 cut(s)	82, 157, 257, 407
BstMBI	GATC	4 cut(s)	79, 154, 254, 404
BstMCI	CGRYCG	1 cut(s)	257
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	2 cut(s)	219, 294
BstV1I	GCAGC	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	300
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	436
BtsIMutI	CAGTG	1 cut(s)	106
BveI	ACCTGC	2 cut(s)	370, 388
Cac8I	GCNNGC	2 cut(s)	326, 424
Cfr13I	GGNCC	1 cut(s)	298
CviAII	CATG	3 cut(s)	137, 158, 465
CviJI	RGCY	7 cut(s)	37, 188, 271, 300, 328, 349, 422
CviKI_1	RGCY	7 cut(s)	37, 188, 271, 300, 328, 349, 422
DpnI	GATC	4 cut(s)	81, 156, 256, 406
DpnII	GATC	4 cut(s)	79, 154, 254, 404
DraIII	CACNNNGTG	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Ecl136II	GAGCTC	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	349
EcoICRI	GAGCTC	1 cut(s)	349
EcoRI	GAATTC	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	351
FaeI	CATG	3 cut(s)	140, 161, 468
FaiI	YATR	6 cut(s)	47, 127, 138, 150, 159, 466
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	3 cut(s)	136, 157, 464
FauI	CCCGC	2 cut(s)	317, 419
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	2 cut(s)	262, 272
FokI	GGATG	1 cut(s)	443
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	2 cut(s)	262, 272
GluI	GCNGC	2 cut(s)	262, 272
GsaI	CCCAGC	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	300
HapII	CCGG	2 cut(s)	221, 247
Hin1I	GRCGYC	2 cut(s)	236, 435
Hin1II	CATG	3 cut(s)	140, 161, 468
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	2 cut(s)	221, 247
HphI	GGTGA	3 cut(s)	351, 352, 425
Hpy188I	TCNGA	4 cut(s)	33, 79, 287, 409
Hpy188III	TCNNGA	2 cut(s)	252, 352
Hpy99I	CGWCG	5 cut(s)	238, 241, 269, 308, 440
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	1 cut(s)	413
HpyCH4IV	ACGT	4 cut(s)	210, 236, 306, 435
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
HpySE526I	ACGT	4 cut(s)	210, 236, 306, 435
Hsp92I	GRCGYC	2 cut(s)	236, 435
Hsp92II	CATG	3 cut(s)	140, 161, 468
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	4 cut(s)	79, 154, 254, 404
LmnI	GCTCC	4 cut(s)	246, 310, 346, 419
Lsp1109I	GCAGC	1 cut(s)	258
MaeII	ACGT	4 cut(s)	210, 236, 306, 435
MaeIII	GTNAC	2 cut(s)	249, 451
MalI	GATC	4 cut(s)	81, 156, 256, 406
MbiI	CCGCTC	1 cut(s)	261
MboI	GATC	4 cut(s)	79, 154, 254, 404
MboII	GAAGA	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	2 cut(s)	110, 355
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	1 cut(s)	254
MspI	CCGG	2 cut(s)	221, 247
MspR9I	CCNGG	2 cut(s)	221, 296
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	238
NciI	CCSGG	1 cut(s)	221
NdeII	GATC	4 cut(s)	79, 154, 254, 404
NlaIII	CATG	3 cut(s)	140, 161, 468
NlaIV	GGNNCC	2 cut(s)	167, 421
NmuCI	GTSAC	1 cut(s)	249
NspV	TTCGAA	1 cut(s)	201
PaqCI	CACCTGC	2 cut(s)	370, 388
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PflMI	CCANNNNNTGG	1 cut(s)	307
PkrI	GCNGC	2 cut(s)	263, 273
Ple19I	CGATCG	1 cut(s)	257
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	294
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	167, 421
PspPI	GGNCC	1 cut(s)	298
PsrI	GAACNNNNNNTAC	2 cut(s)	158, 190
PvuI	CGATCG	1 cut(s)	257
SacI	GAGCTC	1 cut(s)	351
SatI	GCNGC	2 cut(s)	262, 272
Sau3AI	GATC	4 cut(s)	79, 154, 254, 404
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	2 cut(s)	221, 296
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	9 cut(s)	39, 213, 239, 273, 309, 351, 364, 382, 438
SfuI	TTCGAA	1 cut(s)	201
Sse9I	AATT	2 cut(s)	110, 355
SsiI	CCGC	4 cut(s)	214, 261, 324, 426
SstI	GAGCTC	1 cut(s)	351
StyD4I	CCNGG	2 cut(s)	219, 294
TaaI	ACNGT	1 cut(s)	413
TaiI	ACGT	4 cut(s)	213, 239, 309, 438
TaqI	TCGA	3 cut(s)	201, 257, 438
TasI	AATT	2 cut(s)	110, 355
TauI	GCSGC	1 cut(s)	264
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	249
TseI	GCWGC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	249
TspDTI	ATGAA	1 cut(s)	125
TspGWI	ACGGA	1 cut(s)	12
TspRI	CASTG	1 cut(s)	106
Van91I	CCANNNNNTGG	1 cut(s)	307
XapI	RAATTY	2 cut(s)	110, 355
ZraI	GACGTC	2 cut(s)	237, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.