FvH4_6g34600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000760
Physical Location & Seq
Forward (+)
27289491 .. 27292174
2684 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34600.t1

Sequence Viewer

Length: 1110 bp
ATGGTCGCATTGACTATGAAATCTGAGTCCAAGCAAAATAAAACAACATCTAGAACAGTAAGCTTCGAGAAAACTTATCTCAGCCAAACAAGCAAATCTGATGGGATAGATGAAGTTGTGTTTGAGGAACCAACAAGCTGCAAGAAAAGGAAAATAGGAGAGCTAACAGTTGGAACAAATGGTTCATCTAGTAATACTGAGGGACATTGCCTTGATGAATTCAACCCAGATGATTTGATTTATCCACGGTCCCCAAGTGACCTTGATGAAGCTGCTATCAAGCTGCAGAAAGTTTACAAGAGTTACCGGACTAGGAGAAACCTTGCAGATTGTGCCATTGTTGTAGAGGACCTGTGGTGGCAGGCATTAGACTTTGCTGCTCTTAGGCGGAGTTCTGTGTCATATTTCAACTCAGTTAAAGCAGAAACTGCTGCTTCAAGATGGGCACGGGCTAGGATCAGAGTAGCTAAGGTTGGGAAGGGTCTGTCCAAGGATGAGAAGGCCCAGAAGTTAGCTCTAAGACATTGGCTTGAGGCTATTGATCCACGCCATCGTTATGGACAAAATCTGTACTTGTATTATGATGTATGGTTTAATAGTGGGAGCTTTCAACCTTTCTTCTACTGGTTGGATGTTGGAGATGGCAAAGAAGTCAATCTTGAAAAGTGCCCAAAAATTGATCTGCATCATCAATGCATCAAGTATCTTGGACCAAAAGAGAGGGACGTTTTTGAAGTGACTGTGGAAAGTGGGAAGCTTATGTACAAACAAAGTGGGAACCTTGTGAATACTCCTGAGGGTTCTAAATGGATCTTTGTACTCAGCGCATCAAGAATCATGTACATAGGGGAGAAGAAGCGAGGCCTTTTCCATCACTCTAGTTTTCTTGCCGGAGGTGCCACCCTTGCAGCCGGAAGACTGGTAGCTCATAATGGACTTCTTGAGGCGGTATGGTCCTACAGCGGTCATTATCGCCCAACAGAAGAGAACTTCATGGAATTCATTAGTTTCTTAGAGGAGCTTCATGTGGACTTGACAGATGTTAAAAAATATCCTATAGACGATGATATTCCACCTTCATCTGCTACCGAGAAAGAAGTGAACCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ

Protein Analysis

370

Amino Acids

41.96

Weight (kDa)

7.14

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 896
AciI CCGC 3 cut(s) 388, 947, 963
AclWI GGATC 3 cut(s) 464, 536, 818
AcsI RAATTY 2 cut(s) 218, 998
AfaI GTAC 4 cut(s) 572, 764, 819, 842
AgsI TTSAA 6 cut(s) 223, 409, 438, 611, 662, 734
AlwI GGATC 3 cut(s) 464, 536, 818
AlwNI CAGNNNCTG 1 cut(s) 428
AoxI GGCC 2 cut(s) 501, 862
ApeKI GCWGC 6 cut(s) 138, 272, 283, 377, 431, 908
ApoI RAATTY 2 cut(s) 218, 998
AspLEI GCGC 1 cut(s) 827
AspS9I GGNCC 5 cut(s) 249, 349, 502, 710, 954
AvaII GGWCC 4 cut(s) 249, 349, 710, 954
AxyI CCTNAGG 1 cut(s) 795
BaeGI GKGCMC 2 cut(s) 448, 671
BanI GGYRCC 1 cut(s) 896
BarI GAAGNNNNNNTAC 2 cut(s) 746, 778
BbsI GAAGAC 1 cut(s) 922
BbvI GCAGC 6 cut(s) 125, 259, 270, 364, 418, 920
BccI CCATC 5 cut(s) 95, 435, 558, 635, 879
BfaI CTAG 5 cut(s) 51, 189, 312, 453, 879
BfmI CTRYAG 3 cut(s) 284, 958, 1056
BisI GCNGC 6 cut(s) 139, 273, 284, 378, 432, 909
BlsI GCNGC 6 cut(s) 140, 274, 285, 379, 433, 910
Bme18I GGWCC 4 cut(s) 249, 349, 710, 954
BmgT120I GGNCC 5 cut(s) 249, 349, 502, 710, 954
BmiI GGNNCC 4 cut(s) 129, 251, 779, 898
BmsI GCATC 3 cut(s) 694, 705, 836
BpiI GAAGAC 1 cut(s) 922
Bpu10I CCTNAGC 1 cut(s) 468
BpuEI CTTGAG 2 cut(s) 551, 962
BsaBI GATNNNNATC 1 cut(s) 684
BsaJI CCNNGG 2 cut(s) 245, 489
BsaWI WCCGGW 1 cut(s) 306
Bse1I ACTGG 2 cut(s) 629, 924
Bse21I CCTNAGG 1 cut(s) 795
Bse3DI GCAATG 1 cut(s) 205
Bse8I GATNNNNATC 1 cut(s) 684
BseDI CCNNGG 2 cut(s) 245, 489
BseGI GGATG 2 cut(s) 499, 637
BseJI GATNNNNATC 1 cut(s) 684
BseMI GCAATG 1 cut(s) 205
BseMII CTCAG 6 cut(s) 15, 94, 189, 426, 786, 835
BseNI ACTGG 2 cut(s) 629, 924
BseRI GAGGAG 1 cut(s) 1031
BseSI GKGCMC 2 cut(s) 448, 671
BseXI GCAGC 6 cut(s) 125, 259, 270, 364, 418, 920
BshFI GGCC 2 cut(s) 503, 864
BshNI GGYRCC 1 cut(s) 896
BsiSI CCGG 3 cut(s) 307, 891, 912
BslFI GGGAC 3 cut(s) 216, 235, 737
BsmFI GGGAC 3 cut(s) 216, 235, 737
BsnI GGCC 2 cut(s) 503, 864
Bsp1286I GDGCHC 2 cut(s) 448, 671
Bsp1407I TGTACA 2 cut(s) 762, 840
Bsp143I GATC 4 cut(s) 456, 541, 679, 810
BspACI CCGC 3 cut(s) 388, 947, 963
BspANI GGCC 2 cut(s) 503, 864
BspCNI CTCAG 6 cut(s) 16, 93, 190, 425, 787, 834
BspLI GGNNCC 4 cut(s) 129, 251, 779, 898
BspMAI CTGCAG 1 cut(s) 288
BspPI GGATC 3 cut(s) 464, 536, 818
BspT107I GGYRCC 1 cut(s) 896
BsrDI GCAATG 1 cut(s) 205
BsrGI TGTACA 2 cut(s) 762, 840
BsrI ACTGG 2 cut(s) 629, 924
BssECI CCNNGG 2 cut(s) 245, 489
BssMI GATC 4 cut(s) 456, 541, 679, 810
BssT1I CCWWGG 1 cut(s) 489
Bst4CI ACNGT 4 cut(s) 58, 169, 249, 742
Bst6I CTCTTC 1 cut(s) 978
BstAPI GCANNNNNTGC 2 cut(s) 332, 428
BstAUI TGTACA 2 cut(s) 762, 840
BstC8I GCNNGC 1 cut(s) 363
BstDSI CCRYGG 1 cut(s) 245
BstF5I GGATG 2 cut(s) 499, 637
BstHHI GCGC 1 cut(s) 827
BstKTI GATC 4 cut(s) 459, 544, 682, 813
BstMBI GATC 4 cut(s) 456, 541, 679, 810
BstMWI GCNNNNNNNGC 5 cut(s) 90, 332, 428, 896, 905
BstSFI CTRYAG 3 cut(s) 284, 958, 1056
BstSLI GKGCMC 2 cut(s) 448, 671
BstV1I GCAGC 6 cut(s) 125, 259, 270, 364, 418, 920
BstV2I GAAGAC 1 cut(s) 922
BstX2I RGATCY 1 cut(s) 810
BstXI CCANNNNNNTGG 1 cut(s) 557
BstYI RGATCY 1 cut(s) 810
Bsu36I CCTNAGG 1 cut(s) 795
BsuRI GGCC 2 cut(s) 503, 864
BtgI CCRYGG 1 cut(s) 245
BtsCI GGATG 2 cut(s) 499, 637
Cac8I GCNNGC 1 cut(s) 363
CaiI CAGNNNCTG 1 cut(s) 428
CfoI GCGC 1 cut(s) 827
Cfr13I GGNCC 5 cut(s) 249, 349, 502, 710, 954
Csp6I GTAC 4 cut(s) 571, 763, 818, 841
CspCI CAANNNNNGTGG 2 cut(s) 754, 789
CviAII CATG 3 cut(s) 838, 994, 1025
CviQI GTAC 4 cut(s) 571, 763, 818, 841
DpnI GATC 4 cut(s) 458, 543, 681, 812
DpnII GATC 4 cut(s) 456, 541, 679, 810
Eam1104I CTCTTC 1 cut(s) 978
EarI CTCTTC 1 cut(s) 978
EciI GGCGGA 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 489
Eco147I AGGCCT 1 cut(s) 864
Eco47I GGWCC 4 cut(s) 249, 349, 710, 954
Eco81I CCTNAGG 1 cut(s) 795
EcoO109I RGGNCCY 1 cut(s) 349
EcoRI GAATTC 2 cut(s) 218, 998
EcoT14I CCWWGG 1 cut(s) 489
EcoT22I ATGCAT 1 cut(s) 698
ErhI CCWWGG 1 cut(s) 489
FaeI CATG 3 cut(s) 841, 997, 1028
FalI AAGNNNNNCTT 2 cut(s) 642, 674
FaqI GGGAC 3 cut(s) 216, 235, 737
FatI CATG 3 cut(s) 837, 993, 1024
Fnu4HI GCNGC 6 cut(s) 139, 273, 284, 378, 432, 909
FokI GGATG 2 cut(s) 506, 644
Fsp4HI GCNGC 6 cut(s) 139, 273, 284, 378, 432, 909
FspBI CTAG 5 cut(s) 51, 189, 312, 453, 879
GlaI GCGC 1 cut(s) 826
GluI GCNGC 6 cut(s) 139, 273, 284, 378, 432, 909
HaeIII GGCC 2 cut(s) 503, 864
HapII CCGG 3 cut(s) 307, 891, 912
HhaI GCGC 1 cut(s) 827
Hin1II CATG 3 cut(s) 841, 997, 1028
Hin6I GCGC 1 cut(s) 825
HinP1I GCGC 1 cut(s) 825
HindIII AAGCTT 2 cut(s) 61, 755
HinfI GANTC 2 cut(s) 26, 834
HpaII CCGG 3 cut(s) 307, 891, 912
Hpy166II GTNNAC 3 cut(s) 295, 1030, 1102
Hpy188I TCNGA 3 cut(s) 25, 100, 461
Hpy188III TCNNGA 7 cut(s) 51, 67, 438, 659, 794, 831, 941
Hpy8I GTNNAC 3 cut(s) 295, 1030, 1102
HpyAV CCTTC 3 cut(s) 472, 493, 1086
HpyCH4III ACNGT 4 cut(s) 58, 169, 249, 742
HpyCH4IV ACGT 1 cut(s) 726
HpyCH4V TGCA 6 cut(s) 141, 286, 326, 685, 696, 908
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 332, 428, 896, 905
HpySE526I ACGT 1 cut(s) 726
Hsp92II CATG 3 cut(s) 841, 997, 1028
HspAI GCGC 1 cut(s) 825
Kzo9I GATC 4 cut(s) 456, 541, 679, 810
LmnI GCTCC 2 cut(s) 603, 1018
Lsp1109I GCAGC 6 cut(s) 125, 259, 270, 364, 418, 920
LweI GCATC 3 cut(s) 694, 705, 836
MaeI CTAG 5 cut(s) 51, 189, 312, 453, 879
MaeII ACGT 1 cut(s) 726
MaeIII GTNAC 3 cut(s) 257, 302, 736
MalI GATC 4 cut(s) 458, 543, 681, 812
MboI GATC 4 cut(s) 456, 541, 679, 810
MboII GAAGA 4 cut(s) 610, 865, 927, 995
MflI RGATCY 1 cut(s) 810
MhlI GDGCHC 2 cut(s) 448, 671
MluCI AATT 3 cut(s) 218, 675, 998
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 3 cut(s) 151, 609, 616
Mph1103I ATGCAT 1 cut(s) 698
MseI TTAA 4 cut(s) 417, 594, 1044, 1108
MslI CAYNNNNRTG 1 cut(s) 555
MspA1I CMGCKG 1 cut(s) 963
MspI CCGG 3 cut(s) 307, 891, 912
MwoI GCNNNNNNNGC 5 cut(s) 90, 332, 428, 896, 905
NdeII GATC 4 cut(s) 456, 541, 679, 810
NlaIII CATG 3 cut(s) 841, 997, 1028
NlaIV GGNNCC 4 cut(s) 129, 251, 779, 898
NmuCI GTSAC 2 cut(s) 257, 736
NsiI ATGCAT 1 cut(s) 698
PceI AGGCCT 1 cut(s) 864
PfeI GAWTC 1 cut(s) 834
PkrI GCNGC 6 cut(s) 140, 274, 285, 379, 433, 910
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PpuMI RGGWCCY 1 cut(s) 349
Psp5II RGGWCCY 1 cut(s) 349
PspN4I GGNNCC 4 cut(s) 129, 251, 779, 898
PspPI GGNCC 5 cut(s) 249, 349, 502, 710, 954
PspPPI RGGWCCY 1 cut(s) 349
PstI CTGCAG 1 cut(s) 288
PstNI CAGNNNCTG 1 cut(s) 428
PsuI RGATCY 1 cut(s) 810
RsaI GTAC 4 cut(s) 572, 764, 819, 842
RsaNI GTAC 4 cut(s) 571, 763, 818, 841
RseI CAYNNNNRTG 1 cut(s) 555
SaqAI TTAA 4 cut(s) 417, 594, 1044, 1108
SatI GCNGC 6 cut(s) 139, 273, 284, 378, 432, 909
Sau3AI GATC 4 cut(s) 456, 541, 679, 810
Sau96I GGNCC 5 cut(s) 249, 349, 502, 710, 954
SchI GAGTC 1 cut(s) 35
SduI GDGCHC 2 cut(s) 448, 671
SfaNI GCATC 3 cut(s) 694, 705, 836
SfcI CTRYAG 3 cut(s) 284, 958, 1056
SinI GGWCC 4 cut(s) 249, 349, 710, 954
SmiMI CAYNNNNRTG 1 cut(s) 555
SmlI CTYRAG 2 cut(s) 530, 941
SmoI CTYRAG 2 cut(s) 530, 941
Sse9I AATT 3 cut(s) 218, 675, 998
SseBI AGGCCT 1 cut(s) 864
SsiI CCGC 3 cut(s) 388, 947, 963
SspMI CTAG 5 cut(s) 51, 189, 312, 453, 879
StuI AGGCCT 1 cut(s) 864
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 4 cut(s) 58, 169, 249, 742
TaiI ACGT 1 cut(s) 729
TaqI TCGA 1 cut(s) 66
TasI AATT 3 cut(s) 218, 675, 998
TatI WGTACW 4 cut(s) 570, 762, 817, 840
TfiI GAWTC 1 cut(s) 834
Tru1I TTAA 4 cut(s) 417, 594, 1044, 1108
Tru9I TTAA 4 cut(s) 417, 594, 1044, 1108
TseFI GTSAC 2 cut(s) 257, 736
TseI GCWGC 6 cut(s) 138, 272, 283, 377, 431, 908
Tsp45I GTSAC 2 cut(s) 257, 736
TspDTI ATGAA 9 cut(s) 32, 126, 174, 231, 282, 982, 991, 1013, 1068
VpaK11BI GGWCC 4 cut(s) 249, 349, 710, 954
XapI RAATTY 2 cut(s) 218, 998
XbaI TCTAGA 1 cut(s) 50
XspI CTAG 5 cut(s) 51, 189, 312, 453, 879
Zsp2I ATGCAT 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.