RLG00000020062

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000760
Physical Location & Seq
Reverse (-)
60660220 .. 60662603
2384 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020062

Sequence Viewer

Length: 1434 bp
ATGAGTTTAGTGTCCAAGAGAACGAAGGTGATGTCAAGAACAGTTAGTTTTGAGAACACCGATTCAAGCAACACCAACAGATCCGATGGCCTAGATACATTGGTTTTAGAAAAATCTTTAAGCTACAAGAAAAGGAAAGCAGGACAACTAAAGCTCGATACTTCAACTTTGCTACCCGAGCTAGAAGGCTGTATTTCTCCACAGATCCCGCGCGAGCTTGATGAAGCTGCAATCAAGCTGCAGAAATTTTACAAGAGTTACCGAACTAGACGAAACCTTGCAGATTGTGCTGTTGTTGTCGAGGAGCTATGGTGGAAGGCATTAGACTTTGCTGCACTTAGGCGGAGCTCTGTCTCATTCTTTGAATCTGTTGAATCAGAAACTGCAGTTTCCAGATGGGCAAGGGCTAAGACTAGGGCTGCCAAGACAGGTTTATTATATACACTTAAACCCAATCTGAGATTGGCTTGTATGAACACTTGGTTAACTATTGATCCACGGCATCGATATGGACACAATTTGCACTTGTATTATGATGTCTGGTTTAATAGTGCGAGCTCTCAACCTTTCTTCTACTGGTTGGATGTTGGAGATGGTAAAGAAGAAAATCTTGAGAAGTGTCCAAGAGCGGATCTTCAACGCCAATGCATCAAGTACCTTGGACCGAATGAGAGGGAAACATATGAAGTGATCGTGGCAAGTGGGAAGCTTGTATACAGACAAAGTGGCAACCTTGTGACTACTACTGAGGGTTCCAAATGGATCTTTGTTCTCAGTGCATCGAGGATTATGTATGTCGCGGAGAAGAAGAAAGGCTATTTCCAGCACTCTAGTTTTCTATCCGGAGGTGCCACAATTGCAGCGGGGAGATTAGTTGCTTCTGATGGGGTTCTTGCGGCTGTGTGGTGCTACAGTGGTCATTATCGCCCGACAGAAGAGCACTTTTTGGAGTTCATTAGCTTCTTAGAGGAGCAACAGGTGGACTTGACAAATGTCAAAAAACATCCTATAGATGATGATATTCCACCTTCAGAATCTACCAGTAAAGATATGAGCACCCTTGAGGATATCCCATCGGCAAACATTGAGACGAGTACTAATGAAAATGAGCGTGCCATTGACGCTTCCATAGGAAGTGATGACAATAAAGACACTGTGGAAGCACCAAAATTTGACTCGGGAGGGGGATTGCCTTGCAAATGGGCTACAGGAGCTGGTCCTCGAATCGGATGTGTGAGAGACTACCCCACACGGCTGCAATTTCAGGCACTTGAGCAAGTCAATCTGTCACCAAGAATCAAACCAGAACGCACTGCAAGCAATAATACCCCAGTGCCTTCACCAAGACCTAGTCCCAAGTTCCACTTATCACCTAGACTTGCATATATGGGACTTCCTAGCCCCAGAAGATTGCATAATTTAAGTCCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

478

Amino Acids

53.65

Weight (kDa)

8.71

Isoelectric Point (pI)

50.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 848
AccBSI CCGCTC 1 cut(s) 629
AccI GTMKAC 1 cut(s) 714
AccII CGCG 3 cut(s) 211, 213, 800
AccIII TCCGGA 1 cut(s) 842
AciI CCGC 6 cut(s) 209, 343, 629, 800, 863, 896
AclWI GGATC 5 cut(s) 75, 199, 488, 639, 770
AcsI RAATTY 2 cut(s) 245, 1169
AcuI CTGAAG 1 cut(s) 1014
AfaI GTAC 2 cut(s) 656, 1096
AfiI CCNNNNNNNGG 1 cut(s) 1226
AgsI TTSAA 5 cut(s) 66, 165, 365, 374, 638
Alw21I GWGCWC 4 cut(s) 350, 560, 942, 1058
Alw26I GTCTC 3 cut(s) 358, 1082, 1233
AlwI GGATC 5 cut(s) 75, 199, 488, 639, 770
AlwNI CAGNNNCTG 2 cut(s) 383, 1214
Ama87I CYCGRG 2 cut(s) 176, 1177
Aor13HI TCCGGA 1 cut(s) 842
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 6 cut(s) 227, 238, 332, 419, 860, 1255
ApoI RAATTY 2 cut(s) 245, 1169
ArsI GACNNNNNNTTYG 2 cut(s) 17, 49
AspLEI GCGC 1 cut(s) 213
AspS9I GGNCC 2 cut(s) 662, 1217
AsuHPI GGTGA 4 cut(s) 40, 1281, 1332, 1362
AvaI CYCGRG 2 cut(s) 176, 1177
AvaII GGWCC 2 cut(s) 662, 1217
BaeI ACNNNNGTAYC 2 cut(s) 87, 120
BanI GGYRCC 1 cut(s) 848
BanII GRGCYC 2 cut(s) 350, 560
BarI GAAGNNNNNNTAC 2 cut(s) 698, 730
Bbv12I GWGCWC 4 cut(s) 350, 560, 942, 1058
BbvI GCAGC 6 cut(s) 214, 225, 319, 406, 872, 1242
BccI CCATC 5 cut(s) 80, 390, 587, 878, 1081
BceAI ACGGC 2 cut(s) 515, 1268
BcoDI GTCTC 3 cut(s) 358, 1082, 1233
BfaI CTAG 8 cut(s) 92, 182, 267, 414, 831, 1350, 1374, 1398
BfmI CTRYAG 5 cut(s) 239, 384, 910, 1008, 1206
BisI GCNGC 7 cut(s) 228, 239, 333, 420, 861, 897, 1256
BlsI GCNGC 7 cut(s) 229, 240, 334, 421, 862, 898, 1257
BmcAI AGTACT 1 cut(s) 1096
Bme18I GGWCC 2 cut(s) 662, 1217
BmeT110I CYCGRG 2 cut(s) 176, 1177
BmgT120I GGNCC 2 cut(s) 662, 1217
BmiI GGNNCC 2 cut(s) 754, 850
BmrI ACTGGG 1 cut(s) 1325
BmsI GCATC 3 cut(s) 511, 657, 788
BmuI ACTGGG 1 cut(s) 1325
BoxI GACNNNNGTC 1 cut(s) 992
BpuEI CTTGAG 3 cut(s) 632, 1082, 1292
Bsa29I ATCGAT 1 cut(s) 505
BsaJI CCNNGG 2 cut(s) 497, 658
BsaWI WCCGGW 1 cut(s) 842
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 1 cut(s) 1226
Bse1I ACTGG 3 cut(s) 581, 1041, 1331
BseAI TCCGGA 1 cut(s) 842
BseCI ATCGAT 1 cut(s) 505
BseDI CCNNGG 2 cut(s) 497, 658
BseGI GGATG 3 cut(s) 589, 1003, 1235
BseLI CCNNNNNNNGG 1 cut(s) 1226
BseMII CTCAG 3 cut(s) 449, 738, 787
BseNI ACTGG 3 cut(s) 581, 1041, 1331
BseRI GAGGAG 2 cut(s) 317, 983
BseXI GCAGC 6 cut(s) 214, 225, 319, 406, 872, 1242
BsgI GTGCAG 1 cut(s) 318
Bsh1236I CGCG 3 cut(s) 211, 213, 800
BshFI GGCC 1 cut(s) 90
BshNI GGYRCC 1 cut(s) 848
BshVI ATCGAT 1 cut(s) 505
BsiHKAI GWGCWC 4 cut(s) 350, 560, 942, 1058
BsiHKCI CYCGRG 2 cut(s) 176, 1177
BsiSI CCGG 1 cut(s) 843
BslFI GGGAC 2 cut(s) 1338, 1404
BslI CCNNNNNNNGG 1 cut(s) 1226
BsmAI GTCTC 3 cut(s) 358, 1082, 1233
BsmBI CGTCTC 1 cut(s) 1082
BsmFI GGGAC 2 cut(s) 1338, 1404
BsnI GGCC 1 cut(s) 90
BsoBI CYCGRG 2 cut(s) 176, 1177
Bsp1286I GDGCHC 4 cut(s) 350, 560, 942, 1058
Bsp13I TCCGGA 1 cut(s) 842
Bsp143I GATC 6 cut(s) 80, 204, 493, 631, 690, 762
BspACI CCGC 6 cut(s) 209, 343, 629, 800, 863, 896
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 3 cut(s) 450, 739, 786
BspDI ATCGAT 1 cut(s) 505
BspEI TCCGGA 1 cut(s) 842
BspFNI CGCG 3 cut(s) 211, 213, 800
BspLI GGNNCC 2 cut(s) 754, 850
BspMAI CTGCAG 2 cut(s) 243, 388
BspPI GGATC 5 cut(s) 75, 199, 488, 639, 770
BspQI GCTCTTC 1 cut(s) 930
BspT107I GGYRCC 1 cut(s) 848
BsrBI CCGCTC 1 cut(s) 629
BsrI ACTGG 3 cut(s) 581, 1041, 1331
BssECI CCNNGG 2 cut(s) 497, 658
BssMI GATC 6 cut(s) 80, 204, 493, 631, 690, 762
BssNAI GTATAC 1 cut(s) 715
BssT1I CCWWGG 1 cut(s) 658
Bst1107I GTATAC 1 cut(s) 715
Bst4CI ACNGT 3 cut(s) 43, 914, 1156
Bst6I CTCTTC 1 cut(s) 930
BstAPI GCANNNNNTGC 1 cut(s) 287
BstC8I GCNNGC 4 cut(s) 215, 556, 1113, 1318
BstDEI CTNAG 7 cut(s) 338, 408, 458, 747, 773, 964, 1431
BstDSI CCRYGG 1 cut(s) 497
BstF5I GGATG 3 cut(s) 589, 1003, 1235
BstFNI CGCG 3 cut(s) 211, 213, 800
BstHHI GCGC 1 cut(s) 213
BstKTI GATC 6 cut(s) 83, 207, 496, 634, 693, 765
BstMAI GTCTC 3 cut(s) 358, 1082, 1233
BstMBI GATC 6 cut(s) 80, 204, 493, 631, 690, 762
BstMWI GCNNNNNNNGC 6 cut(s) 178, 287, 857, 1121, 1211, 1317
BstPAI GACNNNNGTC 1 cut(s) 992
BstSFI CTRYAG 5 cut(s) 239, 384, 910, 1008, 1206
BstUI CGCG 3 cut(s) 211, 213, 800
BstV1I GCAGC 6 cut(s) 214, 225, 319, 406, 872, 1242
BstX2I RGATCY 4 cut(s) 80, 204, 631, 762
BstYI RGATCY 4 cut(s) 80, 204, 631, 762
BstZ17I GTATAC 1 cut(s) 715
Bsu15I ATCGAT 1 cut(s) 505
BsuRI GGCC 1 cut(s) 90
BsuTUI ATCGAT 1 cut(s) 505
BtgI CCRYGG 1 cut(s) 497
BtsCI GGATG 3 cut(s) 589, 1003, 1235
BtsI GCAGTG 1 cut(s) 1311
BtsIMutI CAGTG 5 cut(s) 781, 919, 1152, 1311, 1338
Cac8I GCNNGC 4 cut(s) 215, 556, 1113, 1318
CaiI CAGNNNCTG 2 cut(s) 383, 1214
CfoI GCGC 1 cut(s) 213
Cfr13I GGNCC 2 cut(s) 662, 1217
ClaI ATCGAT 1 cut(s) 505
CseI GACGC 1 cut(s) 1130
Csp6I GTAC 2 cut(s) 655, 1095
CviQI GTAC 2 cut(s) 655, 1095
DdeI CTNAG 7 cut(s) 338, 408, 458, 747, 773, 964, 1431
DpnI GATC 6 cut(s) 82, 206, 495, 633, 692, 764
DpnII GATC 6 cut(s) 80, 204, 493, 631, 690, 762
Eam1104I CTCTTC 1 cut(s) 930
EarI CTCTTC 1 cut(s) 930
EciI GGCGGA 1 cut(s) 358
Ecl136II GAGCTC 2 cut(s) 348, 558
Eco130I CCWWGG 1 cut(s) 658
Eco24I GRGCYC 2 cut(s) 350, 560
Eco32I GATATC 1 cut(s) 1069
Eco47I GGWCC 2 cut(s) 662, 1217
Eco53kI GAGCTC 2 cut(s) 348, 558
Eco57I CTGAAG 1 cut(s) 1014
Eco88I CYCGRG 2 cut(s) 176, 1177
EcoICRI GAGCTC 2 cut(s) 348, 558
EcoRV GATATC 1 cut(s) 1069
EcoT14I CCWWGG 1 cut(s) 658
EcoT22I ATGCAT 1 cut(s) 650
EcoT38I GRGCYC 2 cut(s) 350, 560
ErhI CCWWGG 1 cut(s) 658
Esp3I CGTCTC 1 cut(s) 1082
FalI AAGNNNNNCTT 5 cut(s) 594, 626, 1349, 1381, 1414
FaqI GGGAC 2 cut(s) 1338, 1404
FauI CCCGC 2 cut(s) 216, 856
FauNDI CATATG 1 cut(s) 682
FblI GTMKAC 1 cut(s) 714
Fnu4HI GCNGC 7 cut(s) 228, 239, 333, 420, 861, 897, 1256
FokI GGATG 3 cut(s) 596, 990, 1242
FriOI GRGCYC 2 cut(s) 350, 560
Fsp4HI GCNGC 7 cut(s) 228, 239, 333, 420, 861, 897, 1256
FspBI CTAG 8 cut(s) 92, 182, 267, 414, 831, 1350, 1374, 1398
GlaI GCGC 1 cut(s) 212
GluI GCNGC 7 cut(s) 228, 239, 333, 420, 861, 897, 1256
HaeIII GGCC 1 cut(s) 90
HapII CCGG 1 cut(s) 843
HgaI GACGC 1 cut(s) 1130
HhaI GCGC 1 cut(s) 213
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 7 cut(s) 62, 365, 374, 1034, 1175, 1224, 1296
HpaI GTTAAC 1 cut(s) 486
HpaII CCGG 1 cut(s) 843
HphI GGTGA 4 cut(s) 40, 1281, 1332, 1362
Hpy166II GTNNAC 3 cut(s) 486, 715, 982
Hpy188I TCNGA 6 cut(s) 85, 379, 459, 883, 1033, 1229
Hpy188III TCNNGA 5 cut(s) 36, 393, 611, 843, 1179
Hpy8I GTNNAC 3 cut(s) 486, 715, 982
HpyAV CCTTC 5 cut(s) 19, 179, 310, 1038, 1347
HpyCH4III ACNGT 3 cut(s) 43, 914, 1156
HpyF10VI GCNNNNNNNGC 6 cut(s) 178, 287, 857, 1121, 1211, 1317
HpyF3I CTNAG 7 cut(s) 338, 408, 458, 747, 773, 964, 1431
HspAI GCGC 1 cut(s) 211
Kpn2I TCCGGA 1 cut(s) 842
KspAI GTTAAC 1 cut(s) 486
Kzo9I GATC 6 cut(s) 80, 204, 493, 631, 690, 762
LguI GCTCTTC 1 cut(s) 930
LmnI GCTCC 4 cut(s) 304, 345, 970, 1211
Lsp1109I GCAGC 6 cut(s) 214, 225, 319, 406, 872, 1242
LweI GCATC 3 cut(s) 511, 657, 788
MaeI CTAG 8 cut(s) 92, 182, 267, 414, 831, 1350, 1374, 1398
MaeIII GTNAC 3 cut(s) 257, 736, 1287
MalI GATC 6 cut(s) 82, 206, 495, 633, 692, 764
MbiI CCGCTC 1 cut(s) 629
MboI GATC 6 cut(s) 80, 204, 493, 631, 690, 762
MboII GAAGA 7 cut(s) 562, 614, 626, 817, 820, 947, 1419
MfeI CAATTG 1 cut(s) 855
MflI RGATCY 4 cut(s) 80, 204, 631, 762
MhlI GDGCHC 4 cut(s) 350, 560, 942, 1058
MluCI AATT 6 cut(s) 245, 517, 855, 1169, 1259, 1417
MlyI GAGTC 1 cut(s) 1169
MmeI TCCRAC 2 cut(s) 561, 568
MnlI CCTC 9 cut(s) 295, 666, 742, 777, 839, 961, 1057, 1175, 1230
Mph1103I ATGCAT 1 cut(s) 650
MroI TCCGGA 1 cut(s) 842
MseI TTAA 5 cut(s) 119, 447, 485, 546, 1421
MslI CAYNNNNRTG 1 cut(s) 507
MspA1I CMGCKG 1 cut(s) 863
MspI CCGG 1 cut(s) 843
MunI CAATTG 1 cut(s) 855
MvnI CGCG 3 cut(s) 211, 213, 800
MwoI GCNNNNNNNGC 6 cut(s) 178, 287, 857, 1121, 1211, 1317
NdeI CATATG 1 cut(s) 682
NdeII GATC 6 cut(s) 80, 204, 493, 631, 690, 762
NlaIV GGNNCC 2 cut(s) 754, 850
NmuCI GTSAC 2 cut(s) 736, 1287
NsiI ATGCAT 1 cut(s) 650
PciSI GCTCTTC 1 cut(s) 930
PfeI GAWTC 6 cut(s) 62, 365, 374, 1034, 1224, 1296
PflFI GACNNNGTC 1 cut(s) 1350
PkrI GCNGC 7 cut(s) 229, 240, 334, 421, 862, 898, 1257
PleI GAGTC 1 cut(s) 1169
PpsI GAGTC 1 cut(s) 1169
PshAI GACNNNNGTC 1 cut(s) 992
Psp124BI GAGCTC 2 cut(s) 350, 560
PspN4I GGNNCC 2 cut(s) 754, 850
PspPI GGNCC 2 cut(s) 662, 1217
PstI CTGCAG 2 cut(s) 243, 388
PstNI CAGNNNCTG 2 cut(s) 383, 1214
PsuI RGATCY 4 cut(s) 80, 204, 631, 762
PsyI GACNNNGTC 1 cut(s) 1350
RsaI GTAC 2 cut(s) 656, 1096
RsaNI GTAC 2 cut(s) 655, 1095
RseI CAYNNNNRTG 1 cut(s) 507
SacI GAGCTC 2 cut(s) 350, 560
SapI GCTCTTC 1 cut(s) 930
SaqAI TTAA 5 cut(s) 119, 447, 485, 546, 1421
SatI GCNGC 7 cut(s) 228, 239, 333, 420, 861, 897, 1256
Sau3AI GATC 6 cut(s) 80, 204, 493, 631, 690, 762
Sau96I GGNCC 2 cut(s) 662, 1217
ScaI AGTACT 1 cut(s) 1096
SchI GAGTC 1 cut(s) 1169
SduI GDGCHC 4 cut(s) 350, 560, 942, 1058
SfaNI GCATC 3 cut(s) 511, 657, 788
SfcI CTRYAG 5 cut(s) 239, 384, 910, 1008, 1206
SinI GGWCC 2 cut(s) 662, 1217
SmiMI CAYNNNNRTG 1 cut(s) 507
SmlI CTYRAG 3 cut(s) 611, 1061, 1271
SmoI CTYRAG 3 cut(s) 611, 1061, 1271
Sse9I AATT 6 cut(s) 245, 517, 855, 1169, 1259, 1417
SsiI CCGC 6 cut(s) 209, 343, 629, 800, 863, 896
SspMI CTAG 8 cut(s) 92, 182, 267, 414, 831, 1350, 1374, 1398
SstI GAGCTC 2 cut(s) 350, 560
StyI CCWWGG 1 cut(s) 658
TaaI ACNGT 3 cut(s) 43, 914, 1156
TaqI TCGA 5 cut(s) 156, 300, 505, 782, 1222
TaqII GACCGA 1 cut(s) 679
TasI AATT 6 cut(s) 245, 517, 855, 1169, 1259, 1417
TatI WGTACW 1 cut(s) 1094
TauI GCSGC 1 cut(s) 899
TfiI GAWTC 6 cut(s) 62, 365, 374, 1034, 1224, 1296
Tru1I TTAA 5 cut(s) 119, 447, 485, 546, 1421
Tru9I TTAA 5 cut(s) 119, 447, 485, 546, 1421
TscAI CASTG 5 cut(s) 781, 919, 1159, 1318, 1338
TseFI GTSAC 2 cut(s) 736, 1287
TseI GCWGC 6 cut(s) 227, 238, 332, 419, 860, 1255
Tsp45I GTSAC 2 cut(s) 736, 1287
TspDTI ATGAA 5 cut(s) 237, 488, 699, 943, 1116
TspRI CASTG 5 cut(s) 781, 919, 1159, 1318, 1338
Tth111I GACNNNGTC 1 cut(s) 1350
VpaK11BI GGWCC 2 cut(s) 662, 1217
XapI RAATTY 2 cut(s) 245, 1169
XcmI CCANNNNNNNNNTGG 1 cut(s) 460
XmiI GTMKAC 1 cut(s) 714
XspI CTAG 8 cut(s) 92, 182, 267, 414, 831, 1350, 1374, 1398
ZrmI AGTACT 1 cut(s) 1096
Zsp2I ATGCAT 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.