Rh6BG030100

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000760
Physical Location & Seq
Forward (+)
4460916 .. 4468498
7583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG030100.1

Sequence Viewer

Length: 813 bp
ATGAGAGAGTTGTTGGATGGTGGCCTTAACAATGCTCTGTCTGAACCAGCAATCTTGTTTTTGCCTAGACTGGTTAGAGAGCTTGATGCTGCAGCAGTCAAAATTCAAAAGGTTTACAAGAGTTATCGAACTCGAAGAAACCTTGCAGATTGTGCAGTGGCGGCTGAGGAGCTATGGTGGAGAGATACGTTAGATTCTCCAGCGGGTGCTAAAGAGCTATGGTGGAAAACTTTAGATTCTGCAGCTCTCAAGCAGAGTTCTGTGTCATTCTTCAATGTTGAGAAGTCAGAAACCGCCGTTTCGCGGTGGATTGGAAAAGGTTTGTCTAAGGATGAGAAAGCACAAATGTTAGCGCTTCAACATTGGCTTGAAGCTATTGATCCACGCCACCGCTATGGACACAATTTACATTTCTATTATGATTTGTGGTTTGAAAGTGAGAGCAGTCAGCCTTTCTTCTACTGGCTGGATGTTGGAGATGGCAAAGAAATAAATCTCGAGAGATGCTCGAGGACAGCTCTACAGCACCAATGCATCGAGTACCTTGGACCGAAAGAAAGGAAATCCCATGAAGTATTAGTGGAAAATGGCAAGCTAATGTATAAGCAAAGTGGGATGCTTGTGAATAGTAGTGAAGGTTCCAAATCGATATTCGTGCTAAGCACAACAAGGGCTTTGTATGTTGGTCAGAAGAAGGGTCAGTTTGACCATTTGAGTTTTCTATCTGGAGGTGCTACCACAGCAGCTGGAAGATTGGTTGCCCATGATGGGGTTCTTGAGGCCATTTGGCCATACAGTGATCATTACGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

30.66

Weight (kDa)

6.76

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 304
AciI CCGC 5 cut(s) 161, 203, 294, 304, 391
AclWI GGATC 1 cut(s) 374
AcoI YGGCCR 1 cut(s) 788
AcsI RAATTY 1 cut(s) 102
AfaI GTAC 1 cut(s) 542
AfeI AGCGCT 1 cut(s) 354
AfiI CCNNNNNNNGG 3 cut(s) 303, 768, 769
AgsI TTSAA 5 cut(s) 107, 274, 359, 371, 434
AjuI GAANNNNNNNTTGG 2 cut(s) 635, 667
AluBI AGCT 8 cut(s) 82, 172, 217, 245, 374, 518, 595, 746
AluI AGCT 8 cut(s) 82, 172, 217, 245, 374, 518, 595, 746
AlwI GGATC 1 cut(s) 374
AlwNI CAGNNNCTG 1 cut(s) 746
Ama87I CYCGRG 2 cut(s) 497, 508
Aor51HI AGCGCT 1 cut(s) 354
AoxI GGCC 3 cut(s) 22, 780, 788
ApeKI GCWGC 4 cut(s) 89, 92, 242, 743
ApoI RAATTY 1 cut(s) 102
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 1 cut(s) 548
AvaI CYCGRG 2 cut(s) 497, 508
AvaII GGWCC 1 cut(s) 548
BalI TGGCCA 1 cut(s) 790
BbvCI CCTCAGC 1 cut(s) 165
BbvI GCAGC 4 cut(s) 76, 104, 254, 755
BccI CCATC 3 cut(s) 11, 473, 761
BceAI ACGGC 1 cut(s) 281
BcgI CGANNNNNNTGC 2 cut(s) 637, 671
BclI TGATCA 1 cut(s) 799
BfaI CTAG 1 cut(s) 66
BfmI CTRYAG 3 cut(s) 90, 240, 521
BfoI RGCGCY 1 cut(s) 356
BisI GCNGC 5 cut(s) 90, 93, 162, 243, 744
BlpI GCTNAGC 1 cut(s) 659
BlsI GCNGC 5 cut(s) 91, 94, 163, 244, 745
Bme18I GGWCC 1 cut(s) 548
BmeT110I CYCGRG 2 cut(s) 497, 508
BmgT120I GGNCC 1 cut(s) 548
BmiI GGNNCC 1 cut(s) 640
BmsI GCATC 4 cut(s) 76, 494, 543, 606
BplI GAGNNNNNCTC 4 cut(s) 491, 523, 502, 534
BpmI CTGGAG 2 cut(s) 183, 747
Bpu10I CCTNAGC 1 cut(s) 165
Bpu1102I GCTNAGC 1 cut(s) 659
BpuEI CTTGAG 2 cut(s) 233, 797
Bsa29I ATCGAT 1 cut(s) 647
BsaJI CCNNGG 1 cut(s) 544
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 3 cut(s) 303, 768, 769
Bse1I ACTGG 2 cut(s) 75, 467
BseCI ATCGAT 1 cut(s) 647
BseDI CCNNGG 1 cut(s) 544
BseGI GGATG 4 cut(s) 22, 337, 475, 621
BseLI CCNNNNNNNGG 3 cut(s) 303, 768, 769
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 2 cut(s) 75, 467
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 4 cut(s) 76, 104, 254, 755
BsgI GTGCAG 1 cut(s) 174
Bsh1236I CGCG 1 cut(s) 304
BshFI GGCC 3 cut(s) 24, 782, 790
BshVI ATCGAT 1 cut(s) 647
BsiHKCI CYCGRG 2 cut(s) 497, 508
BslI CCNNNNNNNGG 3 cut(s) 303, 768, 769
BsnI GGCC 3 cut(s) 24, 782, 790
BsoBI CYCGRG 2 cut(s) 497, 508
Bsp143I GATC 2 cut(s) 379, 799
Bsp1720I GCTNAGC 1 cut(s) 659
BspACI CCGC 5 cut(s) 161, 203, 294, 304, 391
BspANI GGCC 3 cut(s) 24, 782, 790
BspCNI CTCAG 1 cut(s) 157
BspDI ATCGAT 1 cut(s) 647
BspFNI CGCG 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 640
BspMAI CTGCAG 2 cut(s) 94, 244
BspPI GGATC 1 cut(s) 374
BsrI ACTGG 2 cut(s) 75, 467
BssECI CCNNGG 1 cut(s) 544
BssMI GATC 2 cut(s) 379, 799
BssT1I CCWWGG 1 cut(s) 544
Bst4CI ACNGT 1 cut(s) 797
BstAPI GCANNNNNTGC 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 593
BstDEI CTNAG 3 cut(s) 165, 327, 659
BstF5I GGATG 4 cut(s) 22, 337, 475, 621
BstFNI CGCG 1 cut(s) 304
BstH2I RGCGCY 1 cut(s) 356
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 2 cut(s) 382, 802
BstMBI GATC 2 cut(s) 379, 799
BstMWI GCNNNNNNNGC 3 cut(s) 152, 161, 740
BstSFI CTRYAG 3 cut(s) 90, 240, 521
BstUI CGCG 1 cut(s) 304
BstV1I GCAGC 4 cut(s) 76, 104, 254, 755
BstXI CCANNNNNNTGG 1 cut(s) 395
Bsu15I ATCGAT 1 cut(s) 647
BsuRI GGCC 3 cut(s) 24, 782, 790
BsuTUI ATCGAT 1 cut(s) 647
BtsCI GGATG 4 cut(s) 22, 337, 475, 621
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 162, 802
Cac8I GCNNGC 1 cut(s) 593
CaiI CAGNNNCTG 1 cut(s) 746
CfoI GCGC 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 548
ClaI ATCGAT 1 cut(s) 647
Csp6I GTAC 1 cut(s) 541
CviAII CATG 2 cut(s) 569, 764
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 3 cut(s) 165, 327, 659
DpnI GATC 2 cut(s) 381, 801
DpnII GATC 2 cut(s) 379, 799
EaeI YGGCCR 1 cut(s) 788
Eco130I CCWWGG 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 548
Eco47III AGCGCT 1 cut(s) 354
Eco88I CYCGRG 2 cut(s) 497, 508
EcoT14I CCWWGG 1 cut(s) 544
EcoT22I ATGCAT 1 cut(s) 536
ErhI CCWWGG 1 cut(s) 544
FaeI CATG 2 cut(s) 572, 767
FaiI YATR 9 cut(s) 175, 220, 396, 420, 570, 603, 681, 765, 793
FatI CATG 2 cut(s) 568, 763
FauI CCCGC 1 cut(s) 196
FbaI TGATCA 1 cut(s) 799
Fnu4HI GCNGC 5 cut(s) 90, 93, 162, 243, 744
FokI GGATG 4 cut(s) 29, 344, 482, 628
Fsp4HI GCNGC 5 cut(s) 90, 93, 162, 243, 744
FspBI CTAG 1 cut(s) 66
GlaI GCGC 1 cut(s) 354
GluI GCNGC 5 cut(s) 90, 93, 162, 243, 744
GsuI CTGGAG 2 cut(s) 183, 747
HaeII RGCGCY 1 cut(s) 356
HaeIII GGCC 3 cut(s) 24, 782, 790
HhaI GCGC 1 cut(s) 355
Hin1II CATG 2 cut(s) 572, 767
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HinfI GANTC 2 cut(s) 194, 236
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 3 cut(s) 43, 289, 690
Hpy188III TCNNGA 4 cut(s) 497, 499, 726, 776
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 2 cut(s) 629, 688
HpyCH4III ACNGT 1 cut(s) 797
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 5 cut(s) 92, 146, 155, 242, 534
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 161, 740
HpyF3I CTNAG 3 cut(s) 165, 327, 659
HpySE526I ACGT 1 cut(s) 188
Hsp92II CATG 2 cut(s) 572, 767
HspAI GCGC 1 cut(s) 353
Ksp22I TGATCA 1 cut(s) 799
Kzo9I GATC 2 cut(s) 379, 799
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 7 cut(s) 56, 60, 213, 448, 452, 711, 732
Lsp1109I GCAGC 4 cut(s) 76, 104, 254, 755
LweI GCATC 4 cut(s) 76, 494, 543, 606
MaeI CTAG 1 cut(s) 66
MaeII ACGT 1 cut(s) 188
MalI GATC 2 cut(s) 381, 801
MboI GATC 2 cut(s) 379, 799
MboII GAAGA 5 cut(s) 147, 262, 448, 703, 762
MlsI TGGCCA 1 cut(s) 790
MluCI AATT 2 cut(s) 102, 403
MluNI TGGCCA 1 cut(s) 790
MmeI TCCRAC 1 cut(s) 454
MnlI CCTC 4 cut(s) 160, 504, 722, 772
Mox20I TGGCCA 1 cut(s) 790
Mph1103I ATGCAT 1 cut(s) 536
MscI TGGCCA 1 cut(s) 790
MseI TTAA 1 cut(s) 27
MslI CAYNNNNRTG 1 cut(s) 393
Msp20I TGGCCA 1 cut(s) 790
MspA1I CMGCKG 2 cut(s) 203, 746
MvnI CGCG 1 cut(s) 304
MwoI GCNNNNNNNGC 3 cut(s) 152, 161, 740
NdeII GATC 2 cut(s) 379, 799
NlaIII CATG 2 cut(s) 572, 767
NlaIV GGNNCC 1 cut(s) 640
NsiI ATGCAT 1 cut(s) 536
PaeR7I CTCGAG 2 cut(s) 497, 508
PfeI GAWTC 2 cut(s) 194, 236
PkrI GCNGC 5 cut(s) 91, 94, 163, 244, 745
PspN4I GGNNCC 1 cut(s) 640
PspPI GGNCC 1 cut(s) 548
PspXI VCTCGAGB 1 cut(s) 508
PsrI GAACNNNNNNTAC 2 cut(s) 622, 654
PstI CTGCAG 2 cut(s) 94, 244
PstNI CAGNNNCTG 1 cut(s) 746
PvuII CAGCTG 1 cut(s) 746
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
RseI CAYNNNNRTG 1 cut(s) 393
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 5 cut(s) 90, 93, 162, 243, 744
Sau3AI GATC 2 cut(s) 379, 799
Sau96I GGNCC 1 cut(s) 548
SfaNI GCATC 4 cut(s) 76, 494, 543, 606
SfcI CTRYAG 3 cut(s) 90, 240, 521
Sfr274I CTCGAG 2 cut(s) 497, 508
SinI GGWCC 1 cut(s) 548
SlaI CTCGAG 2 cut(s) 497, 508
SmiMI CAYNNNNRTG 1 cut(s) 393
SmlI CTYRAG 4 cut(s) 248, 497, 508, 776
SmoI CTYRAG 4 cut(s) 248, 497, 508, 776
Sse9I AATT 2 cut(s) 102, 403
SsiI CCGC 5 cut(s) 161, 203, 294, 304, 391
SspMI CTAG 1 cut(s) 66
StyI CCWWGG 1 cut(s) 544
TaaI ACNGT 1 cut(s) 797
TaiI ACGT 1 cut(s) 191
TaqI TCGA 6 cut(s) 127, 133, 498, 509, 537, 647
TaqII GACCGA 1 cut(s) 565
TasI AATT 2 cut(s) 102, 403
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 2 cut(s) 194, 236
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 2 cut(s) 162, 802
TseI GCWGC 4 cut(s) 89, 92, 242, 743
TspDTI ATGAA 1 cut(s) 585
TspRI CASTG 2 cut(s) 162, 802
VpaK11BI GGWCC 1 cut(s) 548
XapI RAATTY 1 cut(s) 102
XhoI CTCGAG 2 cut(s) 497, 508
XspI CTAG 1 cut(s) 66
Zsp2I ATGCAT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.