Rh2BG454200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000760
Physical Location & Seq
Forward (+)
64284422 .. 64284983
562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG454200.1

Sequence Viewer

Length: 348 bp
ATGTACAAACAAAGTGGGAACCTTGTGAATACTCCTGAAGGTTCTAAATGGATCTTTGTACTCAGCACATCAAGGAACATGTACGTAGGGGAGAAGAAGAAACGCCTTTTCCAGCACTCTAGTTTTCTAGCTGGAGGTGCCACCATTGCAGCCGGAAGACTGGTTGCTCTTAATGGGATTCTTGAGGCTGTATGGTCCTATAGCGGTCATTATTGCCCAACAGAAGATAATTTCATGGAATTCATTAGTTTCTTAGAGGAGCTTCATGTGGACTTGACAGATGTTAAAAAATATCCGATAGATGATGATATTCCACCTTCATCTGCTACCAAGAAAGAAATAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ

Protein Analysis

115

Amino Acids

12.91

Weight (kDa)

5.87

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 137
AciI CCGC 1 cut(s) 204
AclWI GGATC 1 cut(s) 59
AcsI RAATTY 1 cut(s) 239
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 3 cut(s) 5, 60, 83
AflIII ACRYGT 1 cut(s) 78
AluBI AGCT 2 cut(s) 131, 262
AluI AGCT 2 cut(s) 131, 262
AlwI GGATC 1 cut(s) 59
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 195
AvaII GGWCC 1 cut(s) 195
BanI GGYRCC 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 163
BbvI GCAGC 1 cut(s) 161
BfaI CTAG 2 cut(s) 120, 128
BfmI CTRYAG 1 cut(s) 199
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 2 cut(s) 20, 139
BpiI GAAGAC 1 cut(s) 163
BpmI CTGGAG 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 203
BsaAI YACGTR 1 cut(s) 85
Bse1I ACTGG 1 cut(s) 165
Bse3DI GCAATG 1 cut(s) 144
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 165
BseRI GAGGAG 1 cut(s) 272
BseXI GCAGC 1 cut(s) 161
BshNI GGYRCC 1 cut(s) 137
BsiSI CCGG 1 cut(s) 153
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 51
BspACI CCGC 1 cut(s) 204
BspCNI CTCAG 1 cut(s) 75
BspLI GGNNCC 2 cut(s) 20, 139
BspPI GGATC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 144
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 165
BssMI GATC 1 cut(s) 51
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 62, 253
BstKTI GATC 1 cut(s) 54
BstMBI GATC 1 cut(s) 51
BstMWI GCNNNNNNNGC 2 cut(s) 137, 146
BstNSI RCATGY 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 199
BstSNI TACGTA 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 161
BstV2I GAAGAC 1 cut(s) 163
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 195
Csp6I GTAC 3 cut(s) 4, 59, 82
CspCI CAANNNNNGTGG 1 cut(s) 30
CviAII CATG 3 cut(s) 79, 235, 266
CviJI RGCY 4 cut(s) 131, 152, 188, 262
CviKI_1 RGCY 4 cut(s) 131, 152, 188, 262
CviQI GTAC 3 cut(s) 4, 59, 82
DdeI CTNAG 2 cut(s) 62, 253
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
Eco105I TACGTA 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 57
EcoRI GAATTC 1 cut(s) 239
FaeI CATG 3 cut(s) 82, 238, 269
FaiI YATR 5 cut(s) 80, 193, 201, 236, 267
FatI CATG 3 cut(s) 78, 234, 265
Fnu4HI GCNGC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 2 cut(s) 120, 128
GluI GCNGC 1 cut(s) 150
GsuI CTGGAG 1 cut(s) 153
HapII CCGG 1 cut(s) 153
Hin1II CATG 3 cut(s) 82, 238, 269
HinfI GANTC 1 cut(s) 178
HpaII CCGG 1 cut(s) 153
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 1 cut(s) 297
Hpy188III TCNNGA 2 cut(s) 35, 182
Hpy8I GTNNAC 1 cut(s) 271
HpyAV CCTTC 2 cut(s) 32, 327
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 146
HpyF3I CTNAG 2 cut(s) 62, 253
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 3 cut(s) 82, 238, 269
Kzo9I GATC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 5 cut(s) 48, 117, 125, 146, 166
Lsp1109I GCAGC 1 cut(s) 161
MaeI CTAG 2 cut(s) 120, 128
MaeII ACGT 1 cut(s) 84
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 4 cut(s) 106, 109, 168, 236
MflI RGATCY 1 cut(s) 51
MluCI AATT 2 cut(s) 229, 239
MnlI CCTC 3 cut(s) 128, 178, 250
MseI TTAA 2 cut(s) 171, 285
MspI CCGG 1 cut(s) 153
MwoI GCNNNNNNNGC 2 cut(s) 137, 146
NdeII GATC 1 cut(s) 51
NlaIII CATG 3 cut(s) 82, 238, 269
NlaIV GGNNCC 2 cut(s) 20, 139
NspI RCATGY 1 cut(s) 82
PciI ACATGT 1 cut(s) 78
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 1 cut(s) 151
Ppu21I YACGTR 1 cut(s) 85
PscI ACATGT 1 cut(s) 78
PspN4I GGNNCC 2 cut(s) 20, 139
PspPI GGNCC 1 cut(s) 195
PsuI RGATCY 1 cut(s) 51
RsaI GTAC 3 cut(s) 5, 60, 83
RsaNI GTAC 3 cut(s) 4, 59, 82
SaqAI TTAA 2 cut(s) 171, 285
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 1 cut(s) 195
SetI ASST 7 cut(s) 24, 43, 87, 133, 139, 264, 319
SfcI CTRYAG 1 cut(s) 199
SinI GGWCC 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SnaBI TACGTA 1 cut(s) 85
Sse9I AATT 2 cut(s) 229, 239
SsiI CCGC 1 cut(s) 204
SspMI CTAG 2 cut(s) 120, 128
TaiI ACGT 1 cut(s) 87
TasI AATT 2 cut(s) 229, 239
TatI WGTACW 2 cut(s) 3, 58
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 2 cut(s) 171, 285
Tru9I TTAA 2 cut(s) 171, 285
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 4 cut(s) 223, 232, 254, 309
VpaK11BI GGWCC 1 cut(s) 195
XapI RAATTY 1 cut(s) 239
XceI RCATGY 1 cut(s) 82
XspI CTAG 2 cut(s) 120, 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.