Rorug02G0039200

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000760
Physical Location & Seq
Reverse (-)
3039027 .. 3040531
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0039200.1

Sequence Viewer

Length: 1305 bp
ATGAGAGGTGGTGATGATAGAAACCCTGCCATCGAGAGTAAAATATCGGTACCAACTGATTCCTCTGATGGCTTAAGAAGATCGAAACGATTAGCACCGTCAACCAATATTTATGATATCCCAAAGGAATTATTAGTTGAAATCTTTTGTCGACTACCTTGCGCCAAATCTGTTTATAGATGCAAGAGTGTGTCAAAGAGTTGGCGCTCACTCACGTCCGATCCTTATTTTGTCGGCCGTTTATTGTGGCTCCAAAGAGATAACCAAACCCCAATACCTGGTACTATTATAAACCAGTATGGGGAGGAACTCCTTACCACAGATTCGTTTGTGATATTAAGGAGATTCTTCGAACTCAAGAATAAGAGATTACTAGTGGTAGCTACATGGAACGACTTGGTTCTCTGTGAAGATGACGGTGATTATTACATCTGCAATCCAAGGACCATGCAATTGGTTAGTCTTCCTCCGATCCATCAATGCCGTTGGGGATGTAGGCCTCCTGTGGGATTCATCTGTGAGCCATACTCTAAGGAAGAAGAAGACCGACCCGCAGACAATAGTGATAAAAAAGAAGAAGAAGAAGAAAGGAAGGTAATCAAAATTGATGCCGAGTATAAGTGCAAGGTTGTGAGAATTATTCATCCTGATGACACGGAAAAACTTCGTTTCGAATACAAGATTCAGGTCTTCTCTAGTGAGATTGGCGAGTGGCGAGAATCACTAGTATCATGTCCACGCGGCTTTATTTATTCCAGACTCGTGTCCCGTTTTGGCTTTGCAACCAATGGAACGCTATATTGGAATGCTACGGATGGTGATCTGCTTGGGCTGGGACCTTTGATGATCAACAAGAAGAGCACTACCACTTGTTCTAGTGGTGATTCGGGATATCAATTTCATGTTATTAAACTTGTTCGGCAGGAACATGAAGATGAAGATTTACGTTCTTCATTATATTACGTTCAGGTGCACTGTGGACGTCTGCAGTTGGTGCAGACGGTGGAGAATGAGGACCCCTTTGGAGCTAGGCTATCGGTTTGGGAGCTGAAAAAAGAAGAACTAGAACAAATGGCGGTACAAGGGGGTGGAGAACTGGGTCAGAAACACCGGAAAACTTATAATATAATGGACCAAGTAAATTATTGTATGCTTATTTCGCTGGGGTATATGGGTTCTGATCCAAATGATTTGGATACATGTTTTGTGGCTCTAAGAGATTATGATCATAGCGAATCTGTCATTTACAAGTGCAACATTCACACAGGAGAATGGTCCCAGATGGAGAAACATTTTCTGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

434

Amino Acids

50.06

Weight (kDa)

5.64

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 38 - 77 6.5e-09 F-box-like
F-box PF00646 38 - 77 5.3e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 290, 1122
AatII GACGTC 1 cut(s) 985
Acc65I GGTACC 1 cut(s) 49
AccB1I GGYRCC 1 cut(s) 49
AccB7I CCANNNNNTGG 1 cut(s) 278
AccI GTMKAC 1 cut(s) 151
AccII CGCG 1 cut(s) 741
AciI CCGC 3 cut(s) 552, 741, 1076
AclWI GGATC 3 cut(s) 215, 466, 1175
AcoI YGGCCR 1 cut(s) 235
AcyI GRCGYC 1 cut(s) 982
AfaI GTAC 3 cut(s) 51, 283, 1080
AfiI CCNNNNNNNGG 3 cut(s) 278, 301, 506
AflII CTTAAG 1 cut(s) 73
AflIII ACRYGT 1 cut(s) 1199
AgsI TTSAA 1 cut(s) 140
AhlI ACTAGT 2 cut(s) 373, 724
AjiI CACGTC 1 cut(s) 216
AjnI CCWGG 1 cut(s) 277
AjuI GAANNNNNNNTTGG 2 cut(s) 784, 816
AluBI AGCT 3 cut(s) 383, 1028, 1048
AluI AGCT 3 cut(s) 383, 1028, 1048
Alw21I GWGCWC 2 cut(s) 863, 975
Alw44I GTGCAC 1 cut(s) 971
AlwI GGATC 3 cut(s) 215, 466, 1175
AoxI GGCC 2 cut(s) 235, 497
ApaLI GTGCAC 1 cut(s) 971
Asp700I GAANNNNTTC 1 cut(s) 663
Asp718I GGTACC 1 cut(s) 49
AspLEI GCGC 2 cut(s) 164, 207
AspS9I GGNCC 5 cut(s) 444, 836, 1015, 1132, 1275
AsuHPI GGTGA 4 cut(s) 23, 431, 830, 893
AsuII TTCGAA 2 cut(s) 351, 672
AvaII GGWCC 5 cut(s) 444, 836, 1015, 1132, 1275
BaeGI GKGCMC 1 cut(s) 975
BanI GGYRCC 1 cut(s) 49
BauI CACGAG 1 cut(s) 761
BbsI GAAGAC 3 cut(s) 455, 549, 682
Bbv12I GWGCWC 2 cut(s) 863, 975
BccI CCATC 5 cut(s) 38, 62, 483, 809, 1276
BceAI ACGGC 2 cut(s) 222, 468
BcgI CGANNNNNNTGC 2 cut(s) 141, 175
BciT130I CCWGG 1 cut(s) 279
BciVI GTATCC 1 cut(s) 1189
BclI TGATCA 2 cut(s) 846, 1225
BcuI ACTAGT 2 cut(s) 373, 724
BfaI CTAG 7 cut(s) 374, 696, 725, 876, 1029, 1064, 1303
BfmI CTRYAG 1 cut(s) 986
BfoI RGCGCY 1 cut(s) 208
BfrI CTTAAG 1 cut(s) 73
BfuI GTATCC 1 cut(s) 1189
BisI GCNGC 1 cut(s) 742
BlsI GCNGC 1 cut(s) 743
Bme1390I CCNGG 1 cut(s) 279
Bme18I GGWCC 5 cut(s) 444, 836, 1015, 1132, 1275
BmgBI CACGTC 1 cut(s) 216
BmgT120I GGNCC 5 cut(s) 444, 836, 1015, 1132, 1275
BmiI GGNNCC 5 cut(s) 51, 251, 837, 1017, 1277
BmrFI CCNGG 1 cut(s) 279
BmrI ACTGGG 1 cut(s) 1106
BmsI GCATC 2 cut(s) 170, 598
BmuI ACTGGG 1 cut(s) 1106
BoxI GACNNNNGTC 1 cut(s) 763
BpiI GAAGAC 3 cut(s) 455, 549, 682
BplI GAGNNNNNCTC 2 cut(s) 512, 544
Bpu14I TTCGAA 2 cut(s) 351, 672
BpuEI CTTGAG 1 cut(s) 341
BsaBI GATNNNNATC 2 cut(s) 819, 1224
BsaHI GRCGYC 1 cut(s) 982
BsaJI CCNNGG 1 cut(s) 440
BsaWI WCCGGW 1 cut(s) 1110
Bsc4I CCNNNNNNNGG 3 cut(s) 278, 301, 506
Bse1I ACTGG 2 cut(s) 295, 1101
Bse8I GATNNNNATC 2 cut(s) 819, 1224
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 440
BseGI GGATG 3 cut(s) 497, 643, 820
BseJI GATNNNNATC 2 cut(s) 819, 1224
BseLI CCNNNNNNNGG 3 cut(s) 278, 301, 506
BseNI ACTGG 2 cut(s) 295, 1101
BseSI GKGCMC 1 cut(s) 975
BseX3I CGGCCG 1 cut(s) 235
BseYI CCCAGC 2 cut(s) 832, 1162
BsgI GTGCAG 1 cut(s) 1016
Bsh1236I CGCG 1 cut(s) 741
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 2 cut(s) 237, 499
BshNI GGYRCC 1 cut(s) 49
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 2 cut(s) 863, 975
BsiSI CCGG 1 cut(s) 1111
BslFI GGGAC 3 cut(s) 751, 849, 1261
BslI CCNNNNNNNGG 3 cut(s) 278, 301, 506
BsmFI GGGAC 3 cut(s) 751, 849, 1261
BsmI GAATGC 1 cut(s) 811
BsnI GGCC 2 cut(s) 237, 499
Bsp119I TTCGAA 2 cut(s) 351, 672
Bsp1286I GDGCHC 2 cut(s) 863, 975
Bsp143I GATC 7 cut(s) 80, 220, 471, 820, 846, 1180, 1225
BspACI CCGC 3 cut(s) 552, 741, 1076
BspANI GGCC 2 cut(s) 237, 499
BspFNI CGCG 1 cut(s) 741
BspLI GGNNCC 5 cut(s) 51, 251, 837, 1017, 1277
BspMAI CTGCAG 1 cut(s) 990
BspPI GGATC 3 cut(s) 215, 466, 1175
BspQI GCTCTTC 1 cut(s) 851
BspT104I TTCGAA 2 cut(s) 351, 672
BspT107I GGYRCC 1 cut(s) 49
BspTI CTTAAG 1 cut(s) 73
BsrI ACTGG 2 cut(s) 295, 1101
BssECI CCNNGG 1 cut(s) 440
BssMI GATC 7 cut(s) 80, 220, 471, 820, 846, 1180, 1225
BssNI GRCGYC 1 cut(s) 982
BssSI CACGAG 1 cut(s) 761
BssT1I CCWWGG 1 cut(s) 440
Bst2BI CACGAG 1 cut(s) 761
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 4 cut(s) 99, 419, 977, 1003
Bst6I CTCTTC 1 cut(s) 851
BstACI GRCGYC 1 cut(s) 982
BstAFI CTTAAG 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 994
BstBI TTCGAA 2 cut(s) 351, 672
BstDEI CTNAG 2 cut(s) 531, 1214
BstF5I GGATG 3 cut(s) 497, 643, 820
BstFNI CGCG 1 cut(s) 741
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 2 cut(s) 164, 207
BstKTI GATC 7 cut(s) 83, 223, 474, 823, 849, 1183, 1228
BstMBI GATC 7 cut(s) 80, 220, 471, 820, 846, 1180, 1225
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 2 cut(s) 994, 1159
BstNI CCWGG 1 cut(s) 279
BstNSI RCATGY 1 cut(s) 1203
BstPAI GACNNNNGTC 1 cut(s) 763
BstSCI CCNGG 1 cut(s) 277
BstSFI CTRYAG 1 cut(s) 986
BstSLI GKGCMC 1 cut(s) 975
BstUI CGCG 1 cut(s) 741
BstV2I GAAGAC 3 cut(s) 455, 549, 682
BstXI CCANNNNNNTGG 1 cut(s) 454
BstZI CGGCCG 1 cut(s) 235
BsuI GTATCC 1 cut(s) 1189
BsuRI GGCC 2 cut(s) 237, 499
BtrI CACGTC 1 cut(s) 216
BtsCI GGATG 3 cut(s) 497, 643, 820
BtsIMutI CAGTG 1 cut(s) 973
CfoI GCGC 2 cut(s) 164, 207
Cfr13I GGNCC 5 cut(s) 444, 836, 1015, 1132, 1275
CsiI ACCWGGT 1 cut(s) 277
Csp6I GTAC 3 cut(s) 50, 282, 1079
CviAII CATG 6 cut(s) 387, 448, 732, 902, 929, 1200
CviQI GTAC 3 cut(s) 50, 282, 1079
DdeI CTNAG 2 cut(s) 531, 1214
DpnI GATC 7 cut(s) 82, 222, 473, 822, 848, 1182, 1227
DpnII GATC 7 cut(s) 80, 220, 471, 820, 846, 1180, 1225
EaeI YGGCCR 1 cut(s) 235
EagI CGGCCG 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 851
EarI CTCTTC 1 cut(s) 851
EclXI CGGCCG 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 440
Eco147I AGGCCT 1 cut(s) 499
Eco32I GATATC 2 cut(s) 118, 893
Eco47I GGWCC 5 cut(s) 444, 836, 1015, 1132, 1275
Eco52I CGGCCG 1 cut(s) 235
EcoO109I RGGNCCY 2 cut(s) 836, 1015
EcoRII CCWGG 1 cut(s) 277
EcoRV GATATC 2 cut(s) 118, 893
EcoT14I CCWWGG 1 cut(s) 440
ErhI CCWWGG 1 cut(s) 440
FaeI CATG 6 cut(s) 390, 451, 735, 905, 932, 1203
FaqI GGGAC 3 cut(s) 751, 849, 1261
FatI CATG 6 cut(s) 386, 447, 731, 901, 928, 1199
FauI CCCGC 1 cut(s) 559
FbaI TGATCA 2 cut(s) 846, 1225
FblI GTMKAC 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 742
FokI GGATG 3 cut(s) 504, 630, 827
Fsp4HI GCNGC 1 cut(s) 742
FspBI CTAG 7 cut(s) 374, 696, 725, 876, 1029, 1064, 1303
GlaI GCGC 2 cut(s) 163, 206
GluI GCNGC 1 cut(s) 742
GsaI CCCAGC 2 cut(s) 836, 1166
HaeII RGCGCY 1 cut(s) 208
HaeIII GGCC 2 cut(s) 237, 499
HapII CCGG 1 cut(s) 1111
HhaI GCGC 2 cut(s) 164, 207
Hin1I GRCGYC 1 cut(s) 982
Hin1II CATG 6 cut(s) 390, 451, 735, 905, 932, 1203
Hin6I GCGC 2 cut(s) 162, 205
HinP1I GCGC 2 cut(s) 162, 205
HincII GTYRAC 2 cut(s) 102, 152
HindII GTYRAC 2 cut(s) 102, 152
HinfI GANTC 9 cut(s) 59, 323, 345, 510, 682, 719, 759, 884, 1235
HpaII CCGG 1 cut(s) 1111
HphI GGTGA 4 cut(s) 23, 431, 830, 893
Hpy166II GTNNAC 5 cut(s) 102, 152, 737, 973, 980
Hpy188I TCNGA 5 cut(s) 67, 220, 471, 1104, 1180
Hpy188III TCNNGA 5 cut(s) 34, 358, 647, 756, 888
Hpy8I GTNNAC 5 cut(s) 102, 152, 737, 973, 980
HpyAV CCTTC 1 cut(s) 586
HpyCH4III ACNGT 4 cut(s) 99, 419, 977, 1003
HpyCH4IV ACGT 4 cut(s) 215, 946, 963, 982
HpyCH4V TGCA 9 cut(s) 183, 435, 451, 624, 782, 973, 988, 997, 1254
HpyF10VI GCNNNNNNNGC 2 cut(s) 994, 1159
HpyF3I CTNAG 2 cut(s) 531, 1214
HpySE526I ACGT 4 cut(s) 215, 946, 963, 982
Hsp92I GRCGYC 1 cut(s) 982
Hsp92II CATG 6 cut(s) 390, 451, 735, 905, 932, 1203
HspAI GCGC 2 cut(s) 162, 205
KpnI GGTACC 1 cut(s) 53
Ksp22I TGATCA 2 cut(s) 846, 1225
Kzo9I GATC 7 cut(s) 80, 220, 471, 820, 846, 1180, 1225
LguI GCTCTTC 1 cut(s) 851
LmnI GCTCC 3 cut(s) 255, 1025, 1045
LweI GCATC 2 cut(s) 170, 598
MabI ACCWGGT 1 cut(s) 277
MaeI CTAG 7 cut(s) 374, 696, 725, 876, 1029, 1064, 1303
MaeII ACGT 4 cut(s) 215, 946, 963, 982
MalI GATC 7 cut(s) 82, 222, 473, 822, 848, 1182, 1227
MboI GATC 7 cut(s) 80, 220, 471, 820, 846, 1180, 1225
MfeI CAATTG 1 cut(s) 452
MhlI GDGCHC 2 cut(s) 863, 975
MluCI AATT 6 cut(s) 128, 452, 603, 636, 896, 1141
MlyI GAGTC 1 cut(s) 753
MnlI CCTC 5 cut(s) 73, 298, 477, 510, 1006
MroXI GAANNNNTTC 1 cut(s) 663
MseI TTAA 3 cut(s) 74, 338, 909
MslI CAYNNNNRTG 2 cut(s) 648, 933
MspCI CTTAAG 1 cut(s) 73
MspI CCGG 1 cut(s) 1111
MspR9I CCNGG 1 cut(s) 279
MunI CAATTG 1 cut(s) 452
Mva1269I GAATGC 1 cut(s) 811
MvaI CCWGG 1 cut(s) 279
MvnI CGCG 1 cut(s) 741
MwoI GCNNNNNNNGC 2 cut(s) 994, 1159
NdeII GATC 7 cut(s) 80, 220, 471, 820, 846, 1180, 1225
NlaIII CATG 6 cut(s) 390, 451, 735, 905, 932, 1203
NlaIV GGNNCC 5 cut(s) 51, 251, 837, 1017, 1277
NmeAIII GCCGAG 1 cut(s) 637
NspI RCATGY 1 cut(s) 1203
NspV TTCGAA 2 cut(s) 351, 672
PceI AGGCCT 1 cut(s) 499
PciI ACATGT 1 cut(s) 1199
PciSI GCTCTTC 1 cut(s) 851
PctI GAATGC 1 cut(s) 811
PdmI GAANNNNTTC 1 cut(s) 663
PfeI GAWTC 8 cut(s) 59, 323, 345, 510, 682, 719, 884, 1235
PflMI CCANNNNNTGG 1 cut(s) 278
PkrI GCNGC 1 cut(s) 743
PleI GAGTC 1 cut(s) 753
PpsI GAGTC 1 cut(s) 753
PpuMI RGGWCCY 2 cut(s) 836, 1015
PscI ACATGT 1 cut(s) 1199
PshAI GACNNNNGTC 1 cut(s) 763
PsiI TTATAA 2 cut(s) 290, 1122
Psp5II RGGWCCY 2 cut(s) 836, 1015
Psp6I CCWGG 1 cut(s) 277
PspFI CCCAGC 2 cut(s) 832, 1162
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 5 cut(s) 51, 251, 837, 1017, 1277
PspPI GGNCC 5 cut(s) 444, 836, 1015, 1132, 1275
PspPPI RGGWCCY 2 cut(s) 836, 1015
PstI CTGCAG 1 cut(s) 990
RsaI GTAC 3 cut(s) 51, 283, 1080
RsaNI GTAC 3 cut(s) 50, 282, 1079
RseI CAYNNNNRTG 2 cut(s) 648, 933
SalI GTCGAC 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 851
SaqAI TTAA 3 cut(s) 74, 338, 909
SatI GCNGC 1 cut(s) 742
Sau3AI GATC 7 cut(s) 80, 220, 471, 820, 846, 1180, 1225
Sau96I GGNCC 5 cut(s) 444, 836, 1015, 1132, 1275
SchI GAGTC 1 cut(s) 753
ScrFI CCNGG 1 cut(s) 279
SduI GDGCHC 2 cut(s) 863, 975
SexAI ACCWGGT 1 cut(s) 277
SfaNI GCATC 2 cut(s) 170, 598
SfcI CTRYAG 1 cut(s) 986
SfuI TTCGAA 2 cut(s) 351, 672
SinI GGWCC 5 cut(s) 444, 836, 1015, 1132, 1275
SmiMI CAYNNNNRTG 2 cut(s) 648, 933
SmlI CTYRAG 2 cut(s) 73, 356
SmoI CTYRAG 2 cut(s) 73, 356
SpeI ACTAGT 2 cut(s) 373, 724
Sse9I AATT 6 cut(s) 128, 452, 603, 636, 896, 1141
SseBI AGGCCT 1 cut(s) 499
SsiI CCGC 3 cut(s) 552, 741, 1076
SspI AATATT 1 cut(s) 109
SspMI CTAG 7 cut(s) 374, 696, 725, 876, 1029, 1064, 1303
StuI AGGCCT 1 cut(s) 499
StyD4I CCNGG 1 cut(s) 277
StyI CCWWGG 1 cut(s) 440
TaaI ACNGT 4 cut(s) 99, 419, 977, 1003
TaiI ACGT 4 cut(s) 218, 949, 966, 985
TaqI TCGA 5 cut(s) 33, 83, 151, 351, 672
TaqII GACCGA 1 cut(s) 561
TasI AATT 6 cut(s) 128, 452, 603, 636, 896, 1141
TauI GCSGC 1 cut(s) 744
TfiI GAWTC 8 cut(s) 59, 323, 345, 510, 682, 719, 884, 1235
Tru1I TTAA 3 cut(s) 74, 338, 909
Tru9I TTAA 3 cut(s) 74, 338, 909
TscAI CASTG 1 cut(s) 980
TspDTI ATGAA 6 cut(s) 502, 632, 890, 942, 945, 951
TspGWI ACGGA 2 cut(s) 671, 827
TspRI CASTG 1 cut(s) 980
Van91I CCANNNNNTGG 1 cut(s) 278
Vha464I CTTAAG 1 cut(s) 73
VneI GTGCAC 1 cut(s) 971
VpaK11BI GGWCC 5 cut(s) 444, 836, 1015, 1132, 1275
XceI RCATGY 1 cut(s) 1203
XmiI GTMKAC 1 cut(s) 151
XmnI GAANNNNTTC 1 cut(s) 663
XspI CTAG 7 cut(s) 374, 696, 725, 876, 1029, 1064, 1303
ZraI GACGTC 1 cut(s) 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.