Rh2DG083700

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000760
Physical Location & Seq
Forward (+)
6563064 .. 6565028
1965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG083700.1

Sequence Viewer

Length: 906 bp
ATGTCTTTCTCCAATGTTGAGTCTAACCAGTTGGATGGTGGCCTTAACAATGCTCTAAACCTTGCAGATTGTGCAGTGGTGGCTGAGGAGCTATGGTGGAGAGATACGTTAGATTCTCCAGCGGGTGCTAAAGAGCTATGGTGGAAAACTTTAGATTCTGCAGCTCTCAAGCAGAGTTCTGTGTCACTCTTCAATGTTGAGAAGTCAGAAACCGCCGTTTCGCGGTGGGCAAGGGCTAGGACTAGAGCTGCTAAGATTGGAAAAGGTTTTTCTAAGGATGAGAAAGCACAAATGTTAGCTCTTCAACATTGGCTTGAAGCTATTGATCCACACGCCACCGGTATGGACACAATTTACATTTCTATTATGATTTGTGGTTTGAAAGTGAGAGCAGTCAGCCTTTCTTCTACTGGTAAACTGGATGTTGGAGATGGCAAAAAAATAAATCTCGAGAGATGCTCGAGGACAGCTCTACAGCGCCAATGCATCGAGTACCTTGGACCGAAAGAAAGGAAATCCCATGAAGTAGTAGTGGAAAATGGCAAGCTAATGTATAAGCAGAGTAGGATGCTTGTGAATAGTAGTGAAGGTTCGAAATCGATATTCGTGCTAAGCACAACAAGGGCTTTGTATGTTGTTCAGAAGAAGAAGGGTCAGTTTGACCATTCGAGTTTTCTATCTGGAGGTGCTACCACATCAGCTGGAAGATTGGTTGCCCATGATGGGGTTCTTGAGGCCTTTTGGCCATACAGTGATCATTACCACCCAACTGAAGAAAAGTCCTTGGAATTCATCAGCTTCCTCCAAGATAACCATGTCGATCTCACTAATAGGTGTGCAATTGATGATGACCATCCTTCAATGAAGAAAACTGAAGGGGGAACTAACAAAGCGAAACTCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

33.38

Weight (kDa)

8.18

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 223
AciI CCGC 3 cut(s) 122, 213, 223
AclWI GGATC 1 cut(s) 320
AcoI YGGCCR 1 cut(s) 743
AcsI RAATTY 1 cut(s) 788
AcuI CTGAAG 2 cut(s) 792, 894
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 3 cut(s) 222, 723, 724
AgeI ACCGGT 1 cut(s) 338
AgsI TTSAA 5 cut(s) 193, 305, 317, 382, 861
AlwI GGATC 1 cut(s) 320
Ama87I CYCGRG 2 cut(s) 449, 460
AoxI GGCC 3 cut(s) 40, 735, 743
ApeKI GCWGC 2 cut(s) 161, 248
ApoI RAATTY 1 cut(s) 788
AsiGI ACCGGT 1 cut(s) 338
AspLEI GCGC 1 cut(s) 480
AspS9I GGNCC 1 cut(s) 500
AsuII TTCGAA 1 cut(s) 593
AvaI CYCGRG 2 cut(s) 449, 460
AvaII GGWCC 1 cut(s) 500
BalI TGGCCA 1 cut(s) 745
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 173, 235
BccI CCATC 4 cut(s) 29, 425, 716, 861
BceAI ACGGC 1 cut(s) 200
BcgI CGANNNNNNTGC 2 cut(s) 589, 623
BclI TGATCA 1 cut(s) 754
BfaI CTAG 2 cut(s) 237, 243
BfmI CTRYAG 2 cut(s) 159, 473
BfoI RGCGCY 1 cut(s) 481
BisI GCNGC 2 cut(s) 162, 249
BlpI GCTNAGC 1 cut(s) 611
BlsI GCNGC 2 cut(s) 163, 250
Bme18I GGWCC 1 cut(s) 500
BmeT110I CYCGRG 2 cut(s) 449, 460
BmgT120I GGNCC 1 cut(s) 500
BmsI GCATC 3 cut(s) 446, 495, 558
BplI GAGNNNNNCTC 4 cut(s) 443, 475, 454, 486
BpmI CTGGAG 2 cut(s) 102, 702
Bpu10I CCTNAGC 1 cut(s) 84
Bpu1102I GCTNAGC 1 cut(s) 611
Bpu14I TTCGAA 1 cut(s) 593
BpuEI CTTGAG 2 cut(s) 152, 752
Bsa29I ATCGAT 1 cut(s) 599
BsaBI GATNNNNATC 1 cut(s) 852
BsaJI CCNNGG 2 cut(s) 496, 783
BsaWI WCCGGW 1 cut(s) 338
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 3 cut(s) 222, 723, 724
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 3 cut(s) 28, 415, 423
Bse8I GATNNNNATC 1 cut(s) 852
BseCI ATCGAT 1 cut(s) 599
BseDI CCNNGG 2 cut(s) 496, 783
BseGI GGATG 5 cut(s) 40, 283, 427, 573, 853
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 3 cut(s) 222, 723, 724
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 3 cut(s) 28, 415, 423
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 2 cut(s) 173, 235
BsgI GTGCAG 1 cut(s) 93
Bsh1236I CGCG 1 cut(s) 223
BshFI GGCC 3 cut(s) 42, 737, 745
BshTI ACCGGT 1 cut(s) 338
BshVI ATCGAT 1 cut(s) 599
BsiHKCI CYCGRG 2 cut(s) 449, 460
BsiSI CCGG 1 cut(s) 339
BslI CCNNNNNNNGG 3 cut(s) 222, 723, 724
BsnI GGCC 3 cut(s) 42, 737, 745
BsoBI CYCGRG 2 cut(s) 449, 460
Bsp119I TTCGAA 1 cut(s) 593
Bsp143I GATC 3 cut(s) 325, 754, 820
Bsp1720I GCTNAGC 1 cut(s) 611
BspACI CCGC 3 cut(s) 122, 213, 223
BspANI GGCC 3 cut(s) 42, 737, 745
BspCNI CTCAG 1 cut(s) 76
BspDI ATCGAT 1 cut(s) 599
BspFNI CGCG 1 cut(s) 223
BspMAI CTGCAG 1 cut(s) 163
BspPI GGATC 1 cut(s) 320
BspQI GCTCTTC 1 cut(s) 306
BspT104I TTCGAA 1 cut(s) 593
BsrFI RCCGGY 1 cut(s) 338
BsrI ACTGG 3 cut(s) 28, 415, 423
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 2 cut(s) 496, 783
BssMI GATC 3 cut(s) 325, 754, 820
BssT1I CCWWGG 2 cut(s) 496, 783
Bst4CI ACNGT 1 cut(s) 752
Bst6I CTCTTC 2 cut(s) 194, 306
BstAPI GCANNNNNTGC 1 cut(s) 71
BstBI TTCGAA 1 cut(s) 593
BstC8I GCNNGC 1 cut(s) 545
BstDEI CTNAG 4 cut(s) 84, 252, 273, 611
BstF5I GGATG 5 cut(s) 40, 283, 427, 573, 853
BstFNI CGCG 1 cut(s) 223
BstH2I RGCGCY 1 cut(s) 481
BstHHI GCGC 1 cut(s) 480
BstKTI GATC 3 cut(s) 328, 757, 823
BstMBI GATC 3 cut(s) 325, 754, 820
BstMWI GCNNNNNNNGC 2 cut(s) 71, 80
BstSFI CTRYAG 2 cut(s) 159, 473
BstUI CGCG 1 cut(s) 223
BstV1I GCAGC 2 cut(s) 173, 235
BstXI CCANNNNNNTGG 2 cut(s) 35, 343
Bsu15I ATCGAT 1 cut(s) 599
BsuRI GGCC 3 cut(s) 42, 737, 745
BsuTUI ATCGAT 1 cut(s) 599
BtsCI GGATG 5 cut(s) 40, 283, 427, 573, 853
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 2 cut(s) 81, 757
Cac8I GCNNGC 1 cut(s) 545
CfoI GCGC 1 cut(s) 480
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 1 cut(s) 500
ClaI ATCGAT 1 cut(s) 599
Csp6I GTAC 1 cut(s) 493
CspAI ACCGGT 1 cut(s) 338
CviAII CATG 3 cut(s) 521, 719, 815
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 4 cut(s) 84, 252, 273, 611
DpnI GATC 3 cut(s) 327, 756, 822
DpnII GATC 3 cut(s) 325, 754, 820
EaeI YGGCCR 1 cut(s) 743
Eam1104I CTCTTC 2 cut(s) 194, 306
EarI CTCTTC 2 cut(s) 194, 306
Eco130I CCWWGG 2 cut(s) 496, 783
Eco147I AGGCCT 1 cut(s) 737
Eco47I GGWCC 1 cut(s) 500
Eco57I CTGAAG 2 cut(s) 792, 894
Eco88I CYCGRG 2 cut(s) 449, 460
EcoRI GAATTC 1 cut(s) 788
EcoT14I CCWWGG 2 cut(s) 496, 783
EcoT22I ATGCAT 1 cut(s) 488
ErhI CCWWGG 2 cut(s) 496, 783
FaeI CATG 3 cut(s) 524, 722, 818
FatI CATG 3 cut(s) 520, 718, 814
FauI CCCGC 1 cut(s) 115
FbaI TGATCA 1 cut(s) 754
Fnu4HI GCNGC 2 cut(s) 162, 249
FokI GGATG 5 cut(s) 47, 290, 434, 580, 840
Fsp4HI GCNGC 2 cut(s) 162, 249
FspBI CTAG 2 cut(s) 237, 243
GlaI GCGC 1 cut(s) 479
GluI GCNGC 2 cut(s) 162, 249
GsuI CTGGAG 2 cut(s) 102, 702
HaeII RGCGCY 1 cut(s) 481
HaeIII GGCC 3 cut(s) 42, 737, 745
HapII CCGG 1 cut(s) 339
HhaI GCGC 1 cut(s) 480
Hin1II CATG 3 cut(s) 524, 722, 818
Hin6I GCGC 1 cut(s) 478
HinP1I GCGC 1 cut(s) 478
HinfI GANTC 3 cut(s) 20, 113, 155
HpaII CCGG 1 cut(s) 339
Hpy166II GTNNAC 1 cut(s) 416
Hpy188I TCNGA 2 cut(s) 208, 642
Hpy188III TCNNGA 4 cut(s) 449, 451, 681, 731
Hpy8I GTNNAC 1 cut(s) 416
HpyAV CCTTC 4 cut(s) 581, 643, 867, 869
HpyCH4III ACNGT 1 cut(s) 752
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 5 cut(s) 65, 74, 161, 486, 839
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 80
HpyF3I CTNAG 4 cut(s) 84, 252, 273, 611
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 3 cut(s) 524, 722, 818
HspAI GCGC 1 cut(s) 478
Ksp22I TGATCA 1 cut(s) 754
Kzo9I GATC 3 cut(s) 325, 754, 820
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 7 cut(s) 41, 132, 352, 396, 404, 666, 687
Lsp1109I GCAGC 2 cut(s) 173, 235
LweI GCATC 3 cut(s) 446, 495, 558
MaeI CTAG 2 cut(s) 237, 243
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 1 cut(s) 183
MalI GATC 3 cut(s) 327, 756, 822
MboI GATC 3 cut(s) 325, 754, 820
MboII GAAGA 8 cut(s) 181, 293, 396, 655, 658, 717, 785, 877
MfeI CAATTG 1 cut(s) 840
MlsI TGGCCA 1 cut(s) 745
MluCI AATT 3 cut(s) 351, 788, 840
MluNI TGGCCA 1 cut(s) 745
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 2 cut(s) 12, 406
MnlI CCTC 5 cut(s) 79, 456, 677, 727, 812
Mox20I TGGCCA 1 cut(s) 745
Mph1103I ATGCAT 1 cut(s) 488
MscI TGGCCA 1 cut(s) 745
MseI TTAA 2 cut(s) 45, 904
MslI CAYNNNNRTG 1 cut(s) 341
Msp20I TGGCCA 1 cut(s) 745
MspA1I CMGCKG 2 cut(s) 122, 701
MspI CCGG 1 cut(s) 339
MunI CAATTG 1 cut(s) 840
MvnI CGCG 1 cut(s) 223
MwoI GCNNNNNNNGC 2 cut(s) 71, 80
NdeII GATC 3 cut(s) 325, 754, 820
NlaIII CATG 3 cut(s) 524, 722, 818
NmuCI GTSAC 1 cut(s) 183
NsiI ATGCAT 1 cut(s) 488
NspV TTCGAA 1 cut(s) 593
PaeR7I CTCGAG 2 cut(s) 449, 460
PceI AGGCCT 1 cut(s) 737
PciSI GCTCTTC 1 cut(s) 306
PfeI GAWTC 2 cut(s) 113, 155
PinAI ACCGGT 1 cut(s) 338
PkrI GCNGC 2 cut(s) 163, 250
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PspPI GGNCC 1 cut(s) 500
PspXI VCTCGAGB 1 cut(s) 460
PsrI GAACNNNNNNTAC 2 cut(s) 574, 606
PstI CTGCAG 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 701
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
RseI CAYNNNNRTG 1 cut(s) 341
SapI GCTCTTC 1 cut(s) 306
SaqAI TTAA 2 cut(s) 45, 904
SatI GCNGC 2 cut(s) 162, 249
Sau3AI GATC 3 cut(s) 325, 754, 820
Sau96I GGNCC 1 cut(s) 500
SchI GAGTC 1 cut(s) 29
SfaNI GCATC 3 cut(s) 446, 495, 558
SfcI CTRYAG 2 cut(s) 159, 473
Sfr274I CTCGAG 2 cut(s) 449, 460
SfuI TTCGAA 1 cut(s) 593
SinI GGWCC 1 cut(s) 500
SlaI CTCGAG 2 cut(s) 449, 460
SmiMI CAYNNNNRTG 1 cut(s) 341
SmlI CTYRAG 4 cut(s) 167, 449, 460, 731
SmoI CTYRAG 4 cut(s) 167, 449, 460, 731
Sse9I AATT 3 cut(s) 351, 788, 840
SseBI AGGCCT 1 cut(s) 737
SsiI CCGC 3 cut(s) 122, 213, 223
SspMI CTAG 2 cut(s) 237, 243
StuI AGGCCT 1 cut(s) 737
StyI CCWWGG 2 cut(s) 496, 783
TaaI ACNGT 1 cut(s) 752
TaiI ACGT 1 cut(s) 110
TaqI TCGA 7 cut(s) 450, 461, 489, 593, 599, 668, 819
TaqII GACCGA 1 cut(s) 517
TasI AATT 3 cut(s) 351, 788, 840
TfiI GAWTC 2 cut(s) 113, 155
Tru1I TTAA 2 cut(s) 45, 904
Tru9I TTAA 2 cut(s) 45, 904
TscAI CASTG 2 cut(s) 81, 757
TseFI GTSAC 1 cut(s) 183
TseI GCWGC 2 cut(s) 161, 248
Tsp45I GTSAC 1 cut(s) 183
TspDTI ATGAA 3 cut(s) 537, 781, 878
TspRI CASTG 2 cut(s) 81, 757
VpaK11BI GGWCC 1 cut(s) 500
XapI RAATTY 1 cut(s) 788
XcmI CCANNNNNNNNNTGG 1 cut(s) 35
XhoI CTCGAG 2 cut(s) 449, 460
XspI CTAG 2 cut(s) 237, 243
Zsp2I ATGCAT 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.