Prupe.3G046500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000760
Physical Location & Seq
Forward (+)
3315232 .. 3317353
2122 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G046500.1

Sequence Viewer

Length: 1080 bp
ATTTCTCAAGAACCTATAAGCAGCAAGAAAAGGAAAACAGGAGAGCTAAATTTGAGGACAGGTGATTCATTGAAGACTACACAGGAAAAACCTGATAGTTTCATTGAGAAGTTCAATCCAACAATTTCTTTAACCAAGCCAGAAGATTGGTTTTCTCCCCGGTCCCCAAGGGAGCTTGATGCAGCAGCAATCAAGCTGCAGAAAGTTTACAAGAGTTACCGAACTAGACGAAACATTGCAGATTGCTCTATGGTTGCTGAGGAGCTATGGTGGCAGGCATTAGACTTTGCTGCTCTTAGGCGAAGCTCTGTGTCCTTCTTTGGTTCTGGTAAATCAGAAACTGCAGTTTCAAGATGGGCAAGGGCTAGAACAAGGGCTGCCAAGGTTGGGAAGGGTTTGACCACGGATGAGAAGGCTCCAAAATTAGCTCTAAGACATTGGCTTGAGGCTATTGATCCGCACCATCGTTATGGACAAAATCTGCACTTGTATTATGATGTTTGGTTTAGTAGTGGGAGCTTTCAACCTTTCTTCTACTGGTTGGATGTTGGAGATGGCAAAGAAGTAAATCTTGACAAGTGCCCAAGAACTGATCTGCAGGGTCAATGCATCAAGTACCTTGGACCAAAAGAGAGGGAAGCTTATGAAGTGATTGTGAAAAGTGGGAAGCTTGTGTACAGACAAAGTAGGAAACTTGTGAATACTGCTGAGGGTTGTAAATGGATCTTTGTCCTCAGCACATCAAGGAAAATGTATGTTGGGGAGAAGAAGAAAGGCCTTTTCCAGCACTCTACTTTTCTAGCTGGAGGTGCCACAATTGCAGCAGGGAGAATTGTTGCCTTTAATGGGGTTCTTGAGGCTGTATGGTCCTACAGCGGTCACTACCGCCCGACGGAAGAGAATTTTATGGAGTTCATTAGCTTCTTAGAGGAGCATCAGCTGGACTTAACAGATGTTAAAAAATATCCTATAGATGATGATGTTCCACCTTCTTGTGCTCCCAAGAAAGAGATGAAGTCAGATATCACATCTGCTAATGTTGATGTTGTTTGTGTATATTCACATGTTTTACACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ

Protein Analysis

360

Amino Acids

40.94

Weight (kDa)

9.14

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 809
AciI CCGC 3 cut(s) 458, 876, 886
AclWI GGATC 2 cut(s) 449, 731
AcsI RAATTY 2 cut(s) 49, 901
AfaI GTAC 2 cut(s) 617, 677
AfiI CCNNNNNNNGG 3 cut(s) 387, 846, 892
AflIII ACRYGT 2 cut(s) 1063, 1074
AgsI TTSAA 4 cut(s) 73, 115, 351, 524
Alw21I GWGCWC 1 cut(s) 1000
AlwI GGATC 2 cut(s) 449, 731
AlwNI CAGNNNCTG 1 cut(s) 341
AoxI GGCC 1 cut(s) 775
ApeKI GCWGC 7 cut(s) 21, 182, 185, 196, 290, 377, 821
ApoI RAATTY 2 cut(s) 49, 901
AspS9I GGNCC 3 cut(s) 162, 623, 867
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 74
AvaII GGWCC 3 cut(s) 162, 623, 867
BaeGI GKGCMC 1 cut(s) 584
BanI GGYRCC 1 cut(s) 809
BarI GAAGNNNNNNTAC 2 cut(s) 659, 691
BbsI GAAGAC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 1000
BbvCI CCTCAGC 3 cut(s) 258, 708, 734
BbvI GCAGC 7 cut(s) 33, 183, 194, 197, 277, 364, 833
BccI CCATC 3 cut(s) 348, 471, 548
BcnI CCSGG 1 cut(s) 160
BfaI CTAG 3 cut(s) 225, 366, 800
BfmI CTRYAG 5 cut(s) 197, 342, 596, 871, 969
BisI GCNGC 7 cut(s) 22, 183, 186, 197, 291, 378, 822
BlsI GCNGC 7 cut(s) 23, 184, 187, 198, 292, 379, 823
Bme1390I CCNGG 1 cut(s) 160
Bme18I GGWCC 3 cut(s) 162, 623, 867
BmgT120I GGNCC 3 cut(s) 162, 623, 867
BmiI GGNNCC 3 cut(s) 164, 417, 811
BmrFI CCNGG 1 cut(s) 160
BmsI GCATC 3 cut(s) 169, 618, 943
BpiI GAAGAC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 825
Bpu10I CCTNAGC 3 cut(s) 258, 708, 734
BpuEI CTTGAG 2 cut(s) 464, 875
BpuMI CCSGG 1 cut(s) 160
BsaJI CCNNGG 5 cut(s) 158, 167, 381, 402, 619
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 3 cut(s) 387, 846, 892
Bse1I ACTGG 1 cut(s) 542
Bse3DI GCAATG 1 cut(s) 234
BseDI CCNNGG 5 cut(s) 158, 167, 381, 402, 619
BseGI GGATG 2 cut(s) 412, 550
BseLI CCNNNNNNNGG 3 cut(s) 387, 846, 892
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 3 cut(s) 249, 699, 748
BseNI ACTGG 1 cut(s) 542
BseRI GAGGAG 2 cut(s) 275, 944
BseSI GKGCMC 1 cut(s) 584
BseXI GCAGC 7 cut(s) 33, 183, 194, 197, 277, 364, 833
BsgI GTGCAG 1 cut(s) 467
BshFI GGCC 1 cut(s) 777
BshNI GGYRCC 1 cut(s) 809
BsiHKAI GWGCWC 1 cut(s) 1000
BsiSI CCGG 1 cut(s) 160
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 3 cut(s) 387, 846, 892
BsmFI GGGAC 1 cut(s) 148
BsnI GGCC 1 cut(s) 777
Bsp1286I GDGCHC 2 cut(s) 584, 1000
Bsp1407I TGTACA 1 cut(s) 675
Bsp143I GATC 3 cut(s) 454, 592, 723
BspACI CCGC 3 cut(s) 458, 876, 886
BspANI GGCC 1 cut(s) 777
BspCNI CTCAG 3 cut(s) 250, 700, 747
BspLI GGNNCC 3 cut(s) 164, 417, 811
BspMAI CTGCAG 3 cut(s) 201, 346, 600
BspPI GGATC 2 cut(s) 449, 731
BspT107I GGYRCC 1 cut(s) 809
BsrDI GCAATG 1 cut(s) 234
BsrGI TGTACA 1 cut(s) 675
BsrI ACTGG 1 cut(s) 542
BssECI CCNNGG 5 cut(s) 158, 167, 381, 402, 619
BssMI GATC 3 cut(s) 454, 592, 723
BssT1I CCWWGG 3 cut(s) 167, 381, 619
Bst6I CTCTTC 1 cut(s) 891
BstAUI TGTACA 1 cut(s) 675
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 6 cut(s) 258, 296, 431, 708, 734, 925
BstDSI CCRYGG 1 cut(s) 402
BstF5I GGATG 2 cut(s) 412, 550
BstKTI GATC 3 cut(s) 457, 595, 726
BstMBI GATC 3 cut(s) 454, 592, 723
BstMWI GCNNNNNNNGC 3 cut(s) 271, 809, 818
BstNSI RCATGY 2 cut(s) 1067, 1078
BstSCI CCNGG 1 cut(s) 158
BstSFI CTRYAG 5 cut(s) 197, 342, 596, 871, 969
BstSLI GKGCMC 1 cut(s) 584
BstV1I GCAGC 7 cut(s) 33, 183, 194, 197, 277, 364, 833
BstV2I GAAGAC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 723
BstXI CCANNNNNNTGG 2 cut(s) 147, 470
BstYI RGATCY 1 cut(s) 723
BsuRI GGCC 1 cut(s) 777
BtgI CCRYGG 1 cut(s) 402
BtsCI GGATG 2 cut(s) 412, 550
Cac8I GCNNGC 1 cut(s) 276
CaiI CAGNNNCTG 1 cut(s) 341
Cfr13I GGNCC 3 cut(s) 162, 623, 867
Csp6I GTAC 2 cut(s) 616, 676
CviAII CATG 2 cut(s) 1064, 1075
CviQI GTAC 2 cut(s) 616, 676
DdeI CTNAG 6 cut(s) 258, 296, 431, 708, 734, 925
DpnI GATC 3 cut(s) 456, 594, 725
DpnII GATC 3 cut(s) 454, 592, 723
Eam1104I CTCTTC 1 cut(s) 891
EarI CTCTTC 1 cut(s) 891
Eco130I CCWWGG 3 cut(s) 167, 381, 619
Eco147I AGGCCT 1 cut(s) 777
Eco32I GATATC 1 cut(s) 1024
Eco47I GGWCC 3 cut(s) 162, 623, 867
EcoRV GATATC 1 cut(s) 1024
EcoT14I CCWWGG 3 cut(s) 167, 381, 619
EcoT22I ATGCAT 1 cut(s) 611
ErhI CCWWGG 3 cut(s) 167, 381, 619
FaeI CATG 2 cut(s) 1067, 1078
FalI AAGNNNNNCTT 2 cut(s) 555, 587
FaqI GGGAC 1 cut(s) 148
FatI CATG 2 cut(s) 1063, 1074
Fnu4HI GCNGC 7 cut(s) 22, 183, 186, 197, 291, 378, 822
FokI GGATG 2 cut(s) 419, 557
Fsp4HI GCNGC 7 cut(s) 22, 183, 186, 197, 291, 378, 822
FspBI CTAG 3 cut(s) 225, 366, 800
GluI GCNGC 7 cut(s) 22, 183, 186, 197, 291, 378, 822
GsuI CTGGAG 1 cut(s) 825
HaeIII GGCC 1 cut(s) 777
HapII CCGG 1 cut(s) 160
Hin1II CATG 2 cut(s) 1067, 1078
HindIII AAGCTT 2 cut(s) 639, 668
HinfI GANTC 1 cut(s) 65
HpaII CCGG 1 cut(s) 160
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 2 cut(s) 208, 676
Hpy188I TCNGA 2 cut(s) 337, 1021
Hpy188III TCNNGA 4 cut(s) 8, 351, 572, 854
Hpy8I GTNNAC 2 cut(s) 208, 676
Hpy99I CGWCG 1 cut(s) 895
HpyAV CCTTC 4 cut(s) 325, 385, 406, 999
HpyCH4V TGCA 8 cut(s) 182, 199, 239, 344, 484, 598, 609, 821
HpyF10VI GCNNNNNNNGC 3 cut(s) 271, 809, 818
HpyF3I CTNAG 6 cut(s) 258, 296, 431, 708, 734, 925
Hsp92II CATG 2 cut(s) 1067, 1078
Kzo9I GATC 3 cut(s) 454, 592, 723
LmnI GCTCC 6 cut(s) 172, 262, 421, 516, 931, 1003
Lsp1109I GCAGC 7 cut(s) 33, 183, 194, 197, 277, 364, 833
LweI GCATC 3 cut(s) 169, 618, 943
MaeI CTAG 3 cut(s) 225, 366, 800
MaeIII GTNAC 2 cut(s) 215, 878
MalI GATC 3 cut(s) 456, 594, 725
MboI GATC 3 cut(s) 454, 592, 723
MboII GAAGA 6 cut(s) 85, 155, 523, 778, 781, 908
MfeI CAATTG 1 cut(s) 816
MflI RGATCY 1 cut(s) 723
MhlI GDGCHC 2 cut(s) 584, 1000
MluCI AATT 6 cut(s) 49, 123, 422, 816, 831, 901
MmeI TCCRAC 3 cut(s) 143, 522, 529
MnlI CCTC 9 cut(s) 48, 253, 439, 627, 703, 743, 800, 850, 922
Mph1103I ATGCAT 1 cut(s) 611
MseI TTAA 4 cut(s) 131, 843, 947, 957
MslI CAYNNNNRTG 1 cut(s) 468
MspA1I CMGCKG 2 cut(s) 876, 940
MspI CCGG 1 cut(s) 160
MspR9I CCNGG 1 cut(s) 160
MunI CAATTG 1 cut(s) 816
MwoI GCNNNNNNNGC 3 cut(s) 271, 809, 818
NciI CCSGG 1 cut(s) 160
NdeII GATC 3 cut(s) 454, 592, 723
NlaIII CATG 2 cut(s) 1067, 1078
NlaIV GGNNCC 3 cut(s) 164, 417, 811
NmuCI GTSAC 1 cut(s) 878
NsiI ATGCAT 1 cut(s) 611
NspI RCATGY 2 cut(s) 1067, 1078
PceI AGGCCT 1 cut(s) 777
PciI ACATGT 2 cut(s) 1063, 1074
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 7 cut(s) 23, 184, 187, 198, 292, 379, 823
PscI ACATGT 2 cut(s) 1063, 1074
PspN4I GGNNCC 3 cut(s) 164, 417, 811
PspPI GGNCC 3 cut(s) 162, 623, 867
PstI CTGCAG 3 cut(s) 201, 346, 600
PstNI CAGNNNCTG 1 cut(s) 341
PsuI RGATCY 1 cut(s) 723
PvuII CAGCTG 1 cut(s) 940
RsaI GTAC 2 cut(s) 617, 677
RsaNI GTAC 2 cut(s) 616, 676
RseI CAYNNNNRTG 1 cut(s) 468
SaqAI TTAA 4 cut(s) 131, 843, 947, 957
SatI GCNGC 7 cut(s) 22, 183, 186, 197, 291, 378, 822
Sau3AI GATC 3 cut(s) 454, 592, 723
Sau96I GGNCC 3 cut(s) 162, 623, 867
ScrFI CCNGG 1 cut(s) 160
SduI GDGCHC 2 cut(s) 584, 1000
SfaNI GCATC 3 cut(s) 169, 618, 943
SfcI CTRYAG 5 cut(s) 197, 342, 596, 871, 969
SinI GGWCC 3 cut(s) 162, 623, 867
SmiMI CAYNNNNRTG 1 cut(s) 468
SmlI CTYRAG 3 cut(s) 6, 443, 854
SmoI CTYRAG 3 cut(s) 6, 443, 854
Sse9I AATT 6 cut(s) 49, 123, 422, 816, 831, 901
SseBI AGGCCT 1 cut(s) 777
SsiI CCGC 3 cut(s) 458, 876, 886
SspMI CTAG 3 cut(s) 225, 366, 800
StuI AGGCCT 1 cut(s) 777
StyD4I CCNGG 1 cut(s) 158
StyI CCWWGG 3 cut(s) 167, 381, 619
TasI AATT 6 cut(s) 49, 123, 422, 816, 831, 901
TatI WGTACW 1 cut(s) 675
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 4 cut(s) 131, 843, 947, 957
Tru9I TTAA 4 cut(s) 131, 843, 947, 957
TseFI GTSAC 1 cut(s) 878
TseI GCWGC 7 cut(s) 21, 182, 185, 196, 290, 377, 821
Tsp45I GTSAC 1 cut(s) 878
TspDTI ATGAA 5 cut(s) 57, 91, 660, 904, 1028
TspGWI ACGGA 2 cut(s) 419, 908
VpaK11BI GGWCC 3 cut(s) 162, 623, 867
XapI RAATTY 2 cut(s) 49, 901
XceI RCATGY 2 cut(s) 1067, 1078
XspI CTAG 3 cut(s) 225, 366, 800
Zsp2I ATGCAT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.