RchiOBHm_Chr2g0093701

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000760
Physical Location & Seq
Forward (+)
6907056 .. 6908883
1828 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46875

Sequence Viewer

Length: 1029 bp
ATGTCTTTCTCCAATGTTGAGTCTAACCAGTTGGATGGTGGCCTTAACAATGCTCTGTCTGAACCAGCAATCTTGTTTTTGCCTAGACTGGTTAGAGAGCTTGATGCTGCAGCAGTCAAAATTCAAAAGTTTACAAGAGTTATCGAACTCGAAGAAACCTTGCAGATTGTGCAGTGGTGGAGAGATACGTTAGATTCTCCAGCGGGTGCTAAAGAGCTATGGTGGAAAACTTTAGATTCTGCAGCTCTCAAGCAGAGTTCTGTGTCACTCTTCAATGTTGAGAAGTCAGAAACCGCCGTTTCGCGGTGGGCAAGGGCTAGGACTAGAGCTGCTAAGATTGGAAAAGGTTTTTCTAAGGATGAGAAAGCACAAATGTTAGCTCTTCAACATTGGCTTGAAGCTATTGATCCACACGCCACCGGTATGGACACAATTTACATTTCTATTATGATTTGTGGTTTGAAAGTGAGAGCAGTCAGCCTTTCTTCTACTGGTAAACTGGATGTTGGAGATGGCAAAAAAATAAATCTCGAGAGATGCTCGAGGACAGCTCTACAGCGCCAATGCATCGAGTACCTTGGACCGAAAGAAAGGAAATCCCATGAAGTAGTAGTGGAAAATGGCAAGCTAATGTATAAGCAGAGTAGGATGCTTGTGAATAGTAGTGAAGGTTCGAAATCGATATTCGTGCTAAGCACAACAAGGGCTTTGTATGTTGTTCAGAAGAAGAAGGGTCAGTTTGACCATTCGAGTTTTCTATCTGGAGGTGCTACCACATCAGCTGGAAGATTGGTTGCCCATGATGGGGTTCTTGAGGCCTTTTGGCCATACAGTGATCATTACCACCCAACTGAAGAAAAGTCCTTGGAATTCATCAGCTTCCTCCAAGATAACCATGTCGATCTCACTAATGTCAAGGTAAATGTTCGCATGGCAATAATAATAGTGTCATTAGATTTCCCACTAAATGACGCTACCTTGTTATGGAATATTGAACAGATTTTTGGAACCCTTGCCATGCACTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

342

Amino Acids

38.29

Weight (kDa)

8.24

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 304
AciI CCGC 3 cut(s) 203, 294, 304
AclWI GGATC 1 cut(s) 401
AcoI YGGCCR 1 cut(s) 824
AcsI RAATTY 2 cut(s) 120, 869
AcuI CTGAAG 1 cut(s) 873
AfaI GTAC 1 cut(s) 575
AfiI CCNNNNNNNGG 4 cut(s) 303, 804, 805, 984
AgeI ACCGGT 1 cut(s) 419
AgsI TTSAA 6 cut(s) 125, 274, 386, 398, 463, 995
AjuI GAANNNNNNNTTGG 2 cut(s) 987, 1019
AlwI GGATC 1 cut(s) 401
Ama87I CYCGRG 2 cut(s) 530, 541
AoxI GGCC 3 cut(s) 40, 816, 824
ApeKI GCWGC 4 cut(s) 107, 110, 242, 329
ApoI RAATTY 2 cut(s) 120, 869
AsiGI ACCGGT 1 cut(s) 419
AspLEI GCGC 1 cut(s) 561
AspS9I GGNCC 1 cut(s) 581
AsuII TTCGAA 1 cut(s) 674
AvaI CYCGRG 2 cut(s) 530, 541
AvaII GGWCC 1 cut(s) 581
BalI TGGCCA 1 cut(s) 826
BbvI GCAGC 4 cut(s) 94, 122, 254, 316
BccI CCATC 3 cut(s) 29, 506, 797
BceAI ACGGC 1 cut(s) 281
BcgI CGANNNNNNTGC 2 cut(s) 670, 704
BclI TGATCA 1 cut(s) 835
BfaI CTAG 3 cut(s) 84, 318, 324
BfmI CTRYAG 3 cut(s) 108, 240, 554
BfoI RGCGCY 1 cut(s) 562
BisI GCNGC 4 cut(s) 108, 111, 243, 330
BlpI GCTNAGC 1 cut(s) 692
BlsI GCNGC 4 cut(s) 109, 112, 244, 331
Bme18I GGWCC 1 cut(s) 581
BmeT110I CYCGRG 2 cut(s) 530, 541
BmgT120I GGNCC 1 cut(s) 581
BmiI GGNNCC 1 cut(s) 1009
BmsI GCATC 4 cut(s) 94, 527, 576, 639
BplI GAGNNNNNCTC 4 cut(s) 524, 556, 535, 567
BpmI CTGGAG 2 cut(s) 183, 783
Bpu1102I GCTNAGC 1 cut(s) 692
Bpu14I TTCGAA 1 cut(s) 674
BpuEI CTTGAG 2 cut(s) 233, 833
Bsa29I ATCGAT 1 cut(s) 680
BsaJI CCNNGG 2 cut(s) 577, 864
BsaWI WCCGGW 1 cut(s) 419
Bsc4I CCNNNNNNNGG 4 cut(s) 303, 804, 805, 984
Bse118I RCCGGY 1 cut(s) 419
Bse1I ACTGG 4 cut(s) 28, 93, 496, 504
BseCI ATCGAT 1 cut(s) 680
BseDI CCNNGG 2 cut(s) 577, 864
BseGI GGATG 4 cut(s) 40, 364, 508, 654
BseLI CCNNNNNNNGG 4 cut(s) 303, 804, 805, 984
BseNI ACTGG 4 cut(s) 28, 93, 496, 504
BseXI GCAGC 4 cut(s) 94, 122, 254, 316
BsgI GTGCAG 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 304
BshFI GGCC 3 cut(s) 42, 818, 826
BshTI ACCGGT 1 cut(s) 419
BshVI ATCGAT 1 cut(s) 680
BsiHKCI CYCGRG 2 cut(s) 530, 541
BsiSI CCGG 1 cut(s) 420
BslI CCNNNNNNNGG 4 cut(s) 303, 804, 805, 984
BsnI GGCC 3 cut(s) 42, 818, 826
BsoBI CYCGRG 2 cut(s) 530, 541
Bsp119I TTCGAA 1 cut(s) 674
Bsp143I GATC 3 cut(s) 406, 835, 901
Bsp1720I GCTNAGC 1 cut(s) 692
BspACI CCGC 3 cut(s) 203, 294, 304
BspANI GGCC 3 cut(s) 42, 818, 826
BspDI ATCGAT 1 cut(s) 680
BspFNI CGCG 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 1009
BspMAI CTGCAG 2 cut(s) 112, 244
BspPI GGATC 1 cut(s) 401
BspQI GCTCTTC 1 cut(s) 387
BspT104I TTCGAA 1 cut(s) 674
BsrFI RCCGGY 1 cut(s) 419
BsrI ACTGG 4 cut(s) 28, 93, 496, 504
BssAI RCCGGY 1 cut(s) 419
BssECI CCNNGG 2 cut(s) 577, 864
BssMI GATC 3 cut(s) 406, 835, 901
BssT1I CCWWGG 2 cut(s) 577, 864
Bst4CI ACNGT 2 cut(s) 833, 1025
Bst6I CTCTTC 2 cut(s) 275, 387
BstAPI GCANNNNNTGC 1 cut(s) 169
BstBI TTCGAA 1 cut(s) 674
BstC8I GCNNGC 1 cut(s) 626
BstDEI CTNAG 3 cut(s) 333, 354, 692
BstF5I GGATG 4 cut(s) 40, 364, 508, 654
BstFNI CGCG 1 cut(s) 304
BstH2I RGCGCY 1 cut(s) 562
BstHHI GCGC 1 cut(s) 561
BstKTI GATC 3 cut(s) 409, 838, 904
BstMBI GATC 3 cut(s) 406, 835, 901
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstSFI CTRYAG 3 cut(s) 108, 240, 554
BstUI CGCG 1 cut(s) 304
BstV1I GCAGC 4 cut(s) 94, 122, 254, 316
BstXI CCANNNNNNTGG 2 cut(s) 35, 424
Bsu15I ATCGAT 1 cut(s) 680
BsuRI GGCC 3 cut(s) 42, 818, 826
BsuTUI ATCGAT 1 cut(s) 680
BtsCI GGATG 4 cut(s) 40, 364, 508, 654
BtsI GCAGTG 1 cut(s) 179
BtsIMutI CAGTG 3 cut(s) 179, 838, 1021
Cac8I GCNNGC 1 cut(s) 626
CfoI GCGC 1 cut(s) 561
Cfr10I RCCGGY 1 cut(s) 419
Cfr13I GGNCC 1 cut(s) 581
ClaI ATCGAT 1 cut(s) 680
CseI GACGC 1 cut(s) 980
Csp6I GTAC 1 cut(s) 574
CspAI ACCGGT 1 cut(s) 419
CviAII CATG 5 cut(s) 602, 800, 896, 931, 1018
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 3 cut(s) 333, 354, 692
DpnI GATC 3 cut(s) 408, 837, 903
DpnII GATC 3 cut(s) 406, 835, 901
EaeI YGGCCR 1 cut(s) 824
Eam1104I CTCTTC 2 cut(s) 275, 387
EarI CTCTTC 2 cut(s) 275, 387
Eco130I CCWWGG 2 cut(s) 577, 864
Eco147I AGGCCT 1 cut(s) 818
Eco47I GGWCC 1 cut(s) 581
Eco57I CTGAAG 1 cut(s) 873
Eco88I CYCGRG 2 cut(s) 530, 541
EcoRI GAATTC 1 cut(s) 869
EcoT14I CCWWGG 2 cut(s) 577, 864
EcoT22I ATGCAT 1 cut(s) 569
ErhI CCWWGG 2 cut(s) 577, 864
FaeI CATG 5 cut(s) 605, 803, 899, 934, 1021
FatI CATG 5 cut(s) 601, 799, 895, 930, 1017
FauI CCCGC 1 cut(s) 196
FbaI TGATCA 1 cut(s) 835
Fnu4HI GCNGC 4 cut(s) 108, 111, 243, 330
FokI GGATG 4 cut(s) 47, 371, 515, 661
Fsp4HI GCNGC 4 cut(s) 108, 111, 243, 330
FspBI CTAG 3 cut(s) 84, 318, 324
GlaI GCGC 1 cut(s) 560
GluI GCNGC 4 cut(s) 108, 111, 243, 330
GsuI CTGGAG 2 cut(s) 183, 783
HaeII RGCGCY 1 cut(s) 562
HaeIII GGCC 3 cut(s) 42, 818, 826
HapII CCGG 1 cut(s) 420
HgaI GACGC 1 cut(s) 980
HhaI GCGC 1 cut(s) 561
Hin1II CATG 5 cut(s) 605, 803, 899, 934, 1021
Hin6I GCGC 1 cut(s) 559
HinP1I GCGC 1 cut(s) 559
HinfI GANTC 3 cut(s) 20, 194, 236
HpaII CCGG 1 cut(s) 420
Hpy166II GTNNAC 2 cut(s) 132, 497
Hpy188I TCNGA 3 cut(s) 61, 289, 723
Hpy188III TCNNGA 4 cut(s) 530, 532, 762, 812
Hpy8I GTNNAC 2 cut(s) 132, 497
HpyAV CCTTC 2 cut(s) 662, 724
HpyCH4III ACNGT 2 cut(s) 833, 1025
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 6 cut(s) 110, 163, 172, 242, 567, 1021
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 3 cut(s) 333, 354, 692
HpySE526I ACGT 1 cut(s) 188
Hsp92II CATG 5 cut(s) 605, 803, 899, 934, 1021
HspAI GCGC 1 cut(s) 559
Ksp22I TGATCA 1 cut(s) 835
Kzo9I GATC 3 cut(s) 406, 835, 901
LguI GCTCTTC 1 cut(s) 387
LpnPI CCDG 9 cut(s) 41, 74, 78, 213, 433, 477, 485, 747, 768
Lsp1109I GCAGC 4 cut(s) 94, 122, 254, 316
LweI GCATC 4 cut(s) 94, 527, 576, 639
MaeI CTAG 3 cut(s) 84, 318, 324
MaeII ACGT 1 cut(s) 188
MaeIII GTNAC 1 cut(s) 264
MalI GATC 3 cut(s) 408, 837, 903
MboI GATC 3 cut(s) 406, 835, 901
MboII GAAGA 8 cut(s) 164, 262, 374, 477, 736, 739, 798, 866
MlsI TGGCCA 1 cut(s) 826
MluCI AATT 3 cut(s) 120, 432, 869
MluNI TGGCCA 1 cut(s) 826
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 2 cut(s) 12, 487
MnlI CCTC 4 cut(s) 537, 758, 808, 893
Mox20I TGGCCA 1 cut(s) 826
Mph1103I ATGCAT 1 cut(s) 569
MscI TGGCCA 1 cut(s) 826
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 1 cut(s) 422
Msp20I TGGCCA 1 cut(s) 826
MspA1I CMGCKG 2 cut(s) 203, 782
MspI CCGG 1 cut(s) 420
MvnI CGCG 1 cut(s) 304
MwoI GCNNNNNNNGC 1 cut(s) 169
NdeII GATC 3 cut(s) 406, 835, 901
NlaIII CATG 5 cut(s) 605, 803, 899, 934, 1021
NlaIV GGNNCC 1 cut(s) 1009
NmuCI GTSAC 1 cut(s) 264
NsiI ATGCAT 1 cut(s) 569
NspV TTCGAA 1 cut(s) 674
PaeR7I CTCGAG 2 cut(s) 530, 541
PceI AGGCCT 1 cut(s) 818
PciSI GCTCTTC 1 cut(s) 387
PfeI GAWTC 2 cut(s) 194, 236
PinAI ACCGGT 1 cut(s) 419
PkrI GCNGC 4 cut(s) 109, 112, 244, 331
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 1009
PspPI GGNCC 1 cut(s) 581
PspXI VCTCGAGB 1 cut(s) 541
PsrI GAACNNNNNNTAC 2 cut(s) 655, 687
PstI CTGCAG 2 cut(s) 112, 244
PvuII CAGCTG 1 cut(s) 782
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
RseI CAYNNNNRTG 1 cut(s) 422
SapI GCTCTTC 1 cut(s) 387
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 4 cut(s) 108, 111, 243, 330
Sau3AI GATC 3 cut(s) 406, 835, 901
Sau96I GGNCC 1 cut(s) 581
SchI GAGTC 1 cut(s) 29
SfaNI GCATC 4 cut(s) 94, 527, 576, 639
SfcI CTRYAG 3 cut(s) 108, 240, 554
Sfr274I CTCGAG 2 cut(s) 530, 541
SfuI TTCGAA 1 cut(s) 674
SinI GGWCC 1 cut(s) 581
SlaI CTCGAG 2 cut(s) 530, 541
SmiMI CAYNNNNRTG 1 cut(s) 422
SmlI CTYRAG 4 cut(s) 248, 530, 541, 812
SmoI CTYRAG 4 cut(s) 248, 530, 541, 812
Sse9I AATT 3 cut(s) 120, 432, 869
SseBI AGGCCT 1 cut(s) 818
SsiI CCGC 3 cut(s) 203, 294, 304
SspI AATATT 1 cut(s) 991
SspMI CTAG 3 cut(s) 84, 318, 324
StuI AGGCCT 1 cut(s) 818
StyI CCWWGG 2 cut(s) 577, 864
TaaI ACNGT 2 cut(s) 833, 1025
TaiI ACGT 1 cut(s) 191
TaqI TCGA 9 cut(s) 144, 150, 531, 542, 570, 674, 680, 749, 900
TaqII GACCGA 1 cut(s) 598
TasI AATT 3 cut(s) 120, 432, 869
TfiI GAWTC 2 cut(s) 194, 236
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 3 cut(s) 179, 838, 1028
TseFI GTSAC 1 cut(s) 264
TseI GCWGC 4 cut(s) 107, 110, 242, 329
Tsp45I GTSAC 1 cut(s) 264
TspDTI ATGAA 2 cut(s) 618, 862
TspRI CASTG 3 cut(s) 179, 838, 1028
VpaK11BI GGWCC 1 cut(s) 581
XapI RAATTY 2 cut(s) 120, 869
XcmI CCANNNNNNNNNTGG 1 cut(s) 35
XhoI CTCGAG 2 cut(s) 530, 541
XspI CTAG 3 cut(s) 84, 318, 324
Zsp2I ATGCAT 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.