MD17G1173600.v1.1

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000760
Physical Location & Seq
Forward (+)
18040741 .. 18043040
2300 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1173600.v1.1.491

Sequence Viewer

Length: 363 bp
ATGTCTTGGACCACTCGTGTACAAAGTAGGAGCCTTGTGAATAGTGTTGAGGGTTCTAAACGGATCTTTGTCCTCAACGCATCAAGGAGCATCTACGTTGGGAAGAAGAAGAAAGGCCTTTTCCAGCACTCCAGTTTTCTAGCAGAAGGTGCCACCATTGCAACCGGAAGATTGGTTGCTTGCAATGGGGTTCTTGAGGCTGTGTGGTGCTACAGCGGTCATTACTACCCAATTGAAGAGAATTTTTTGGAATTCAATAGCTTCCTAGAGGAGCATAAGGTGGACTTGACAAATGTGAAGGTAAATTATTCTAGTCTTCAAATTTGCTTCCATAATTTGCCTAAAGTTGGTTCATATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.54

Weight (kDa)

9.05

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 149
AciI CCGC 1 cut(s) 216
AclWI GGATC 1 cut(s) 71
AcsI RAATTY 3 cut(s) 241, 251, 321
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 347
AgsI TTSAA 3 cut(s) 236, 256, 320
AluBI AGCT 1 cut(s) 261
AluI AGCT 1 cut(s) 261
AlwI GGATC 1 cut(s) 71
AoxI GGCC 1 cut(s) 115
ApoI RAATTY 3 cut(s) 241, 251, 321
AspS9I GGNCC 1 cut(s) 9
AvaII GGWCC 1 cut(s) 9
BanI GGYRCC 1 cut(s) 149
BauI CACGAG 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 308
BfaI CTAG 3 cut(s) 140, 266, 312
BfmI CTRYAG 1 cut(s) 211
Bme18I GGWCC 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 9
BmiI GGNNCC 2 cut(s) 32, 151
BmsI GCATC 2 cut(s) 89, 99
BpiI GAAGAC 1 cut(s) 308
BpmI CTGGAG 1 cut(s) 115
BpuEI CTTGAG 1 cut(s) 215
BsaWI WCCGGW 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 132
Bse3DI GCAATG 2 cut(s) 156, 190
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMI GCAATG 2 cut(s) 156, 190
BseNI ACTGG 1 cut(s) 132
BseRI GAGGAG 1 cut(s) 284
BshFI GGCC 1 cut(s) 117
BshNI GGYRCC 1 cut(s) 149
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 347
BsnI GGCC 1 cut(s) 117
Bsp1407I TGTACA 1 cut(s) 19
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 1 cut(s) 216
BspANI GGCC 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 32, 151
BspPI GGATC 1 cut(s) 71
BspT107I GGYRCC 1 cut(s) 149
BsrDI GCAATG 2 cut(s) 156, 190
BsrGI TGTACA 1 cut(s) 19
BsrI ACTGG 1 cut(s) 132
BssMI GATC 1 cut(s) 63
BssSI CACGAG 1 cut(s) 15
Bst2BI CACGAG 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 231
BstAPI GCANNNNNTGC 1 cut(s) 149
BstAUI TGTACA 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 181
BstKTI GATC 1 cut(s) 66
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 2 cut(s) 149, 158
BstSFI CTRYAG 1 cut(s) 211
BstV2I GAAGAC 1 cut(s) 308
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BsuRI GGCC 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 20
CviJI RGCY 4 cut(s) 33, 117, 200, 261
CviKI_1 RGCY 4 cut(s) 33, 117, 200, 261
CviQI GTAC 1 cut(s) 20
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco147I AGGCCT 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 9
EcoRI GAATTC 1 cut(s) 251
FaiI YATR 5 cut(s) 276, 333, 355, 357, 361
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FauNDI CATATG 1 cut(s) 355
FspBI CTAG 3 cut(s) 140, 266, 312
GsuI CTGGAG 1 cut(s) 115
HaeIII GGCC 1 cut(s) 117
HapII CCGG 1 cut(s) 165
HpaII CCGG 1 cut(s) 165
Hpy166II GTNNAC 2 cut(s) 20, 283
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 2 cut(s) 20, 283
HpyAV CCTTC 2 cut(s) 140, 292
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 2 cut(s) 161, 183
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 158
HpySE526I ACGT 1 cut(s) 96
Kzo9I GATC 1 cut(s) 63
LmnI GCTCC 3 cut(s) 30, 87, 271
LpnPI CCDG 3 cut(s) 137, 145, 178
LweI GCATC 2 cut(s) 89, 99
MaeI CTAG 3 cut(s) 140, 266, 312
MaeII ACGT 1 cut(s) 96
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 6 cut(s) 115, 118, 121, 180, 248, 308
MfeI CAATTG 1 cut(s) 231
MflI RGATCY 1 cut(s) 63
MluCI AATT 6 cut(s) 231, 241, 251, 304, 321, 334
MnlI CCTC 4 cut(s) 43, 83, 190, 262
MslI CAYNNNNRTG 1 cut(s) 358
MspA1I CMGCKG 1 cut(s) 216
MspI CCGG 1 cut(s) 165
MunI CAATTG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 149, 158
NdeI CATATG 1 cut(s) 355
NdeII GATC 1 cut(s) 63
NlaIV GGNNCC 2 cut(s) 32, 151
PceI AGGCCT 1 cut(s) 117
PspN4I GGNNCC 2 cut(s) 32, 151
PspPI GGNCC 1 cut(s) 9
PsuI RGATCY 1 cut(s) 63
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 358
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 9
SetI ASST 5 cut(s) 99, 151, 263, 282, 303
SfaNI GCATC 2 cut(s) 89, 99
SfcI CTRYAG 1 cut(s) 211
SinI GGWCC 1 cut(s) 9
SmiMI CAYNNNNRTG 1 cut(s) 358
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 6 cut(s) 231, 241, 251, 304, 321, 334
SseBI AGGCCT 1 cut(s) 117
SsiI CCGC 1 cut(s) 216
SspMI CTAG 3 cut(s) 140, 266, 312
StuI AGGCCT 1 cut(s) 117
TaiI ACGT 1 cut(s) 99
TasI AATT 6 cut(s) 231, 241, 251, 304, 321, 334
TatI WGTACW 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 342
TspGWI ACGGA 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 9
XapI RAATTY 3 cut(s) 241, 251, 321
XspI CTAG 3 cut(s) 140, 266, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.