RchiOBHm_Chr2g0145121

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000760
Physical Location & Seq
Forward (+)
62712748 .. 62718308
5561 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51498

Sequence Viewer

Length: 705 bp
ATGTCATGCAAACAATGTCTCAGTTTGCTCGTGACACGTCTCAAAGGCCGTCGACTGTTGTTTTTTCACCAGATGATGATGTCTACCGTCCTACAATGCCATTTGATTGCCCCAATATGCAAATTGATTAATCAAATTGATCCACGCCATCGTTATGGACAGAATCTGTACTTGTATTATGATGTGTGGTTTAATAGTGGGAGCTTTCAACCTTTCTTCTACTGGCTGGATGTTGGAGATGGCAAAGAAGTGAATCTCGACAAGTGCCCAAGAACTGAACTGCATCATCAATGCATTAAATACCTTGGACCAAAAGAGAGGGATGCTTATGAAGTGATTGTGGAAAGTGGGAAGCTTATGTACAAACAAAGTGGGAACCTTGTGAATACTCCTGAAGGTTCTAAATGGATCTTTGTACTCAGCACATCAAGGAACATGTACGTAGGGGAGAAGAAGAAACGCCTTTTCCAGCACTCTAGTTTTCTAGCTGGAGGTGCCACCATTGCAGCCGGAAGACTGGTTGCTCTTAATGGGCTTCTTGAGGCTGTATGGTCCTATAGCGGTCATTATTGCCCAACAGAAGAGAATTTCATGGAATTCATTAGTTTCTTAGAGGAGCTTCATGTGGACTTGACAGATGTTAAAAAATATCCGATAGATGATGATATTCCACCTTCATCTGCTACCAAGAAAGAAATAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ

Protein Analysis

234

Amino Acids

26.99

Weight (kDa)

8.1

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 494
AccI GTMKAC 2 cut(s) 52, 83
AciI CCGC 1 cut(s) 561
AclWI GGATC 2 cut(s) 134, 416
AcsI RAATTY 2 cut(s) 586, 596
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 4 cut(s) 170, 362, 417, 440
AflIII ACRYGT 2 cut(s) 35, 435
AgsI TTSAA 1 cut(s) 209
AjiI CACGTC 1 cut(s) 38
AluBI AGCT 4 cut(s) 204, 355, 488, 619
AluI AGCT 4 cut(s) 204, 355, 488, 619
Alw26I GTCTC 2 cut(s) 23, 44
AlwI GGATC 2 cut(s) 134, 416
AlwNI CAGNNNCTG 1 cut(s) 166
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 506
ApoI RAATTY 2 cut(s) 586, 596
AseI ATTAAT 1 cut(s) 129
AspS9I GGNCC 2 cut(s) 308, 552
AsuHPI GGTGA 1 cut(s) 59
AvaII GGWCC 2 cut(s) 308, 552
BaeGI GKGCMC 1 cut(s) 269
BanI GGYRCC 1 cut(s) 494
BarI GAAGNNNNNNTAC 2 cut(s) 344, 376
BauI CACGAG 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 520
BbvI GCAGC 1 cut(s) 518
BccI CCATC 2 cut(s) 156, 233
BceAI ACGGC 1 cut(s) 33
BcoDI GTCTC 2 cut(s) 23, 44
BfaI CTAG 2 cut(s) 477, 485
BfmI CTRYAG 1 cut(s) 556
BisI GCNGC 1 cut(s) 507
BlsI GCNGC 1 cut(s) 508
Bme18I GGWCC 2 cut(s) 308, 552
BmgBI CACGTC 1 cut(s) 38
BmgT120I GGNCC 2 cut(s) 308, 552
BmiI GGNNCC 2 cut(s) 377, 496
BmsI GCATC 2 cut(s) 292, 313
BpiI GAAGAC 1 cut(s) 520
BpmI CTGGAG 1 cut(s) 510
BpuEI CTTGAG 1 cut(s) 560
BsaAI YACGTR 1 cut(s) 442
BsaJI CCNNGG 1 cut(s) 304
Bse1I ACTGG 2 cut(s) 227, 522
Bse3DI GCAATG 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 2 cut(s) 235, 328
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 2 cut(s) 34, 433
BseNI ACTGG 2 cut(s) 227, 522
BseRI GAGGAG 1 cut(s) 629
BseSI GKGCMC 1 cut(s) 269
BseXI GCAGC 1 cut(s) 518
BshFI GGCC 1 cut(s) 48
BshNI GGYRCC 1 cut(s) 494
BsiSI CCGG 1 cut(s) 510
BsmAI GTCTC 2 cut(s) 23, 44
BsmBI CGTCTC 1 cut(s) 44
BsnI GGCC 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 269
Bsp1407I TGTACA 1 cut(s) 360
Bsp143I GATC 2 cut(s) 139, 408
BspACI CCGC 1 cut(s) 561
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 2 cut(s) 33, 432
BspLI GGNNCC 2 cut(s) 377, 496
BspPI GGATC 2 cut(s) 134, 416
BspT107I GGYRCC 1 cut(s) 494
BsrDI GCAATG 1 cut(s) 501
BsrGI TGTACA 1 cut(s) 360
BsrI ACTGG 2 cut(s) 227, 522
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 2 cut(s) 139, 408
BssSI CACGAG 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 304
Bst2BI CACGAG 1 cut(s) 29
Bst4CI ACNGT 2 cut(s) 57, 88
Bst6I CTCTTC 1 cut(s) 576
BstAUI TGTACA 1 cut(s) 360
BstBAI YACGTR 1 cut(s) 442
BstDEI CTNAG 3 cut(s) 20, 419, 610
BstF5I GGATG 2 cut(s) 235, 328
BstKTI GATC 2 cut(s) 142, 411
BstMAI GTCTC 2 cut(s) 23, 44
BstMBI GATC 2 cut(s) 139, 408
BstMWI GCNNNNNNNGC 2 cut(s) 494, 503
BstNSI RCATGY 1 cut(s) 439
BstSFI CTRYAG 1 cut(s) 556
BstSLI GKGCMC 1 cut(s) 269
BstSNI TACGTA 1 cut(s) 442
BstV1I GCAGC 1 cut(s) 518
BstV2I GAAGAC 1 cut(s) 520
BstX2I RGATCY 1 cut(s) 408
BstXI CCANNNNNNTGG 1 cut(s) 155
BstYI RGATCY 1 cut(s) 408
BsuRI GGCC 1 cut(s) 48
BtrI CACGTC 1 cut(s) 38
BtsCI GGATG 2 cut(s) 235, 328
CaiI CAGNNNCTG 1 cut(s) 166
Cfr13I GGNCC 2 cut(s) 308, 552
Csp6I GTAC 4 cut(s) 169, 361, 416, 439
CspCI CAANNNNNGTGG 2 cut(s) 352, 387
CviAII CATG 4 cut(s) 6, 436, 592, 623
CviJI RGCY 9 cut(s) 48, 204, 226, 355, 488, 509, 535, 545, 619
CviKI_1 RGCY 9 cut(s) 48, 204, 226, 355, 488, 509, 535, 545, 619
CviQI GTAC 4 cut(s) 169, 361, 416, 439
DdeI CTNAG 3 cut(s) 20, 419, 610
DpnI GATC 2 cut(s) 141, 410
DpnII GATC 2 cut(s) 139, 408
Eam1104I CTCTTC 1 cut(s) 576
EarI CTCTTC 1 cut(s) 576
Eco105I TACGTA 1 cut(s) 442
Eco130I CCWWGG 1 cut(s) 304
Eco47I GGWCC 2 cut(s) 308, 552
Eco57I CTGAAG 1 cut(s) 414
EcoRI GAATTC 1 cut(s) 596
EcoT14I CCWWGG 1 cut(s) 304
EcoT22I ATGCAT 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 304
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 4 cut(s) 9, 439, 595, 626
FatI CATG 4 cut(s) 5, 435, 591, 622
FblI GTMKAC 2 cut(s) 52, 83
Fnu4HI GCNGC 1 cut(s) 507
FokI GGATG 2 cut(s) 242, 335
Fsp4HI GCNGC 1 cut(s) 507
FspBI CTAG 2 cut(s) 477, 485
GluI GCNGC 1 cut(s) 507
GsuI CTGGAG 1 cut(s) 510
HaeIII GGCC 1 cut(s) 48
HapII CCGG 1 cut(s) 510
Hin1II CATG 4 cut(s) 9, 439, 595, 626
HincII GTYRAC 1 cut(s) 53
HindII GTYRAC 1 cut(s) 53
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 2 cut(s) 163, 253
HpaII CCGG 1 cut(s) 510
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 3 cut(s) 53, 84, 628
Hpy188I TCNGA 1 cut(s) 654
Hpy188III TCNNGA 4 cut(s) 31, 257, 392, 539
Hpy8I GTNNAC 3 cut(s) 53, 84, 628
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 2 cut(s) 389, 684
HpyCH4III ACNGT 2 cut(s) 57, 88
HpyCH4IV ACGT 2 cut(s) 37, 441
HpyCH4V TGCA 5 cut(s) 9, 120, 283, 294, 506
HpyF10VI GCNNNNNNNGC 2 cut(s) 494, 503
HpyF3I CTNAG 3 cut(s) 20, 419, 610
HpySE526I ACGT 2 cut(s) 37, 441
Hsp92II CATG 4 cut(s) 9, 439, 595, 626
Kzo9I GATC 2 cut(s) 139, 408
LmnI GCTCC 2 cut(s) 201, 616
LpnPI CCDG 8 cut(s) 83, 208, 212, 405, 474, 482, 503, 523
Lsp1109I GCAGC 1 cut(s) 518
LweI GCATC 2 cut(s) 292, 313
MaeI CTAG 2 cut(s) 477, 485
MaeII ACGT 2 cut(s) 37, 441
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 141, 410
MboI GATC 2 cut(s) 139, 408
MboII GAAGA 5 cut(s) 208, 463, 466, 525, 593
MflI RGATCY 1 cut(s) 408
MhlI GDGCHC 1 cut(s) 269
MluCI AATT 4 cut(s) 122, 135, 586, 596
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 4 cut(s) 312, 485, 535, 607
Mph1103I ATGCAT 1 cut(s) 296
MseI TTAA 5 cut(s) 129, 192, 297, 528, 642
MslI CAYNNNNRTG 1 cut(s) 153
MspI CCGG 1 cut(s) 510
MwoI GCNNNNNNNGC 2 cut(s) 494, 503
NdeII GATC 2 cut(s) 139, 408
NlaIII CATG 4 cut(s) 9, 439, 595, 626
NlaIV GGNNCC 2 cut(s) 377, 496
NmuCI GTSAC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 296
NspI RCATGY 1 cut(s) 439
PciI ACATGT 1 cut(s) 435
PfeI GAWTC 2 cut(s) 163, 253
PkrI GCNGC 1 cut(s) 508
Ppu21I YACGTR 1 cut(s) 442
PscI ACATGT 1 cut(s) 435
PshBI ATTAAT 1 cut(s) 129
PspN4I GGNNCC 2 cut(s) 377, 496
PspPI GGNCC 2 cut(s) 308, 552
PstNI CAGNNNCTG 1 cut(s) 166
PsuI RGATCY 1 cut(s) 408
RsaI GTAC 4 cut(s) 170, 362, 417, 440
RsaNI GTAC 4 cut(s) 169, 361, 416, 439
RseI CAYNNNNRTG 1 cut(s) 153
SalI GTCGAC 1 cut(s) 51
SaqAI TTAA 5 cut(s) 129, 192, 297, 528, 642
SatI GCNGC 1 cut(s) 507
Sau3AI GATC 2 cut(s) 139, 408
Sau96I GGNCC 2 cut(s) 308, 552
SduI GDGCHC 1 cut(s) 269
SfaNI GCATC 2 cut(s) 292, 313
SfcI CTRYAG 1 cut(s) 556
SinI GGWCC 2 cut(s) 308, 552
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
SnaBI TACGTA 1 cut(s) 442
Sse9I AATT 4 cut(s) 122, 135, 586, 596
SsiI CCGC 1 cut(s) 561
SspMI CTAG 2 cut(s) 477, 485
StyI CCWWGG 1 cut(s) 304
TaaI ACNGT 2 cut(s) 57, 88
TaiI ACGT 2 cut(s) 40, 444
TaqI TCGA 2 cut(s) 52, 258
TasI AATT 4 cut(s) 122, 135, 586, 596
TatI WGTACW 3 cut(s) 168, 360, 415
TfiI GAWTC 2 cut(s) 163, 253
Tru1I TTAA 5 cut(s) 129, 192, 297, 528, 642
Tru9I TTAA 5 cut(s) 129, 192, 297, 528, 642
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 5 cut(s) 345, 580, 589, 611, 666
VpaK11BI GGWCC 2 cut(s) 308, 552
VspI ATTAAT 1 cut(s) 129
XapI RAATTY 2 cut(s) 586, 596
XceI RCATGY 1 cut(s) 439
XmiI GTMKAC 2 cut(s) 52, 83
XspI CTAG 2 cut(s) 477, 485
Zsp2I ATGCAT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.