Rh6CG030600

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000760
Physical Location & Seq
Forward (+)
2737614 .. 2739255
1642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG030600.1

Sequence Viewer

Length: 672 bp
ATGTCTTTCTCCAATGTTGAGTCTAACCAGTTGGATGGTGGCCTTAACAATGCTCTGTCTGAACCAGCAATCTTGTTTTTGCCTAGACTGGTTAGAGAGCTTGATGCTGCAGCAGTCAAAATTCAAAAGGTTTACAAGAGTTATCGAACTCGAAGAAACCTTGCAGATTGTGCAGTGGCGGCTGAGGAGCTATGGTGGAGAGATACGTTAGATTCTCCAGCGGGTGCTAAAGAGCTATGGTGGAAAACTTTAGATTCTGCAGCTCTCAAGCAGAGTTCTGTGTCATTCTTCAATGTTGAGAAGTCAGAAACCGCCGTTTCGCGGCTGGATGTTGGAGATGGCAAAGAAATAAATCTCGAGAGATGCTCGAGGACAGCTCTACAGCACCAATGCATCGAGTACCTTGGACCGAAAGAAAGGAAATCCCATGAAGTATTAGTGGAAAATGGCAAGCTAATGTATAAGCAAAGTGGGATGCTTGTGAATAGTAGTGAAGGTTCCAAATCGATATTCGTGCTAAGCACAACAAGGGCTTTGTATGTTGGTCAGAAGAAGGGTCAGTTTGACCATTTGAGTTTTCTATCTGGAGGTGCTACCACAGCAGCTGGAAGATTGGTTGCCCATGATGGGGTTCTTGAGGCCATTTGGCCATACAGTGATCATTACGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

24.7

Weight (kDa)

6.97

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 322
AciI CCGC 4 cut(s) 179, 221, 312, 322
AcoI YGGCCR 1 cut(s) 647
AcsI RAATTY 1 cut(s) 120
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 3 cut(s) 321, 627, 628
AgsI TTSAA 2 cut(s) 125, 292
AjuI GAANNNNNNNTTGG 2 cut(s) 494, 526
AluBI AGCT 7 cut(s) 100, 190, 235, 263, 377, 454, 605
AluI AGCT 7 cut(s) 100, 190, 235, 263, 377, 454, 605
AlwNI CAGNNNCTG 1 cut(s) 605
Ama87I CYCGRG 2 cut(s) 356, 367
AoxI GGCC 3 cut(s) 40, 639, 647
ApeKI GCWGC 4 cut(s) 107, 110, 260, 602
ApoI RAATTY 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 407
AvaI CYCGRG 2 cut(s) 356, 367
AvaII GGWCC 1 cut(s) 407
BalI TGGCCA 1 cut(s) 649
BbvCI CCTCAGC 1 cut(s) 183
BbvI GCAGC 4 cut(s) 94, 122, 272, 614
BccI CCATC 3 cut(s) 29, 332, 620
BceAI ACGGC 1 cut(s) 299
BcgI CGANNNNNNTGC 2 cut(s) 496, 530
BclI TGATCA 1 cut(s) 658
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 3 cut(s) 108, 258, 380
BisI GCNGC 6 cut(s) 108, 111, 180, 261, 323, 603
BlpI GCTNAGC 1 cut(s) 518
BlsI GCNGC 6 cut(s) 109, 112, 181, 262, 324, 604
Bme18I GGWCC 1 cut(s) 407
BmeT110I CYCGRG 2 cut(s) 356, 367
BmgT120I GGNCC 1 cut(s) 407
BmiI GGNNCC 1 cut(s) 499
BmsI GCATC 4 cut(s) 94, 353, 402, 465
BplI GAGNNNNNCTC 4 cut(s) 350, 382, 361, 393
BpmI CTGGAG 2 cut(s) 201, 606
Bpu10I CCTNAGC 1 cut(s) 183
Bpu1102I GCTNAGC 1 cut(s) 518
BpuEI CTTGAG 2 cut(s) 251, 656
Bsa29I ATCGAT 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 403
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 3 cut(s) 321, 627, 628
Bse1I ACTGG 2 cut(s) 28, 93
BseCI ATCGAT 1 cut(s) 506
BseDI CCNNGG 1 cut(s) 403
BseGI GGATG 3 cut(s) 40, 334, 480
BseLI CCNNNNNNNGG 3 cut(s) 321, 627, 628
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 2 cut(s) 28, 93
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 4 cut(s) 94, 122, 272, 614
BsgI GTGCAG 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 322
BshFI GGCC 3 cut(s) 42, 641, 649
BshVI ATCGAT 1 cut(s) 506
BsiHKCI CYCGRG 2 cut(s) 356, 367
BslI CCNNNNNNNGG 3 cut(s) 321, 627, 628
BsnI GGCC 3 cut(s) 42, 641, 649
BsoBI CYCGRG 2 cut(s) 356, 367
Bsp143I GATC 1 cut(s) 658
Bsp1720I GCTNAGC 1 cut(s) 518
BspACI CCGC 4 cut(s) 179, 221, 312, 322
BspANI GGCC 3 cut(s) 42, 641, 649
BspCNI CTCAG 1 cut(s) 175
BspDI ATCGAT 1 cut(s) 506
BspFNI CGCG 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 499
BspMAI CTGCAG 2 cut(s) 112, 262
BsrI ACTGG 2 cut(s) 28, 93
BssECI CCNNGG 1 cut(s) 403
BssMI GATC 1 cut(s) 658
BssT1I CCWWGG 1 cut(s) 403
Bst4CI ACNGT 1 cut(s) 656
BstAPI GCANNNNNTGC 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 452
BstDEI CTNAG 2 cut(s) 183, 518
BstF5I GGATG 3 cut(s) 40, 334, 480
BstFNI CGCG 1 cut(s) 322
BstKTI GATC 1 cut(s) 661
BstMBI GATC 1 cut(s) 658
BstMWI GCNNNNNNNGC 3 cut(s) 170, 179, 599
BstSFI CTRYAG 3 cut(s) 108, 258, 380
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 4 cut(s) 94, 122, 272, 614
BstXI CCANNNNNNTGG 1 cut(s) 35
Bsu15I ATCGAT 1 cut(s) 506
BsuRI GGCC 3 cut(s) 42, 641, 649
BsuTUI ATCGAT 1 cut(s) 506
BtsCI GGATG 3 cut(s) 40, 334, 480
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 2 cut(s) 180, 661
Cac8I GCNNGC 1 cut(s) 452
CaiI CAGNNNCTG 1 cut(s) 605
Cfr13I GGNCC 1 cut(s) 407
ClaI ATCGAT 1 cut(s) 506
Csp6I GTAC 1 cut(s) 400
CviAII CATG 2 cut(s) 428, 623
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 2 cut(s) 183, 518
DpnI GATC 1 cut(s) 660
DpnII GATC 1 cut(s) 658
EaeI YGGCCR 1 cut(s) 647
Eco130I CCWWGG 1 cut(s) 403
Eco47I GGWCC 1 cut(s) 407
Eco88I CYCGRG 2 cut(s) 356, 367
EcoT14I CCWWGG 1 cut(s) 403
EcoT22I ATGCAT 1 cut(s) 395
ErhI CCWWGG 1 cut(s) 403
FaeI CATG 2 cut(s) 431, 626
FaiI YATR 7 cut(s) 193, 238, 429, 462, 540, 624, 652
FatI CATG 2 cut(s) 427, 622
FauI CCCGC 1 cut(s) 214
FbaI TGATCA 1 cut(s) 658
Fnu4HI GCNGC 6 cut(s) 108, 111, 180, 261, 323, 603
FokI GGATG 3 cut(s) 47, 341, 487
Fsp4HI GCNGC 6 cut(s) 108, 111, 180, 261, 323, 603
FspBI CTAG 1 cut(s) 84
GluI GCNGC 6 cut(s) 108, 111, 180, 261, 323, 603
GsuI CTGGAG 2 cut(s) 201, 606
HaeIII GGCC 3 cut(s) 42, 641, 649
Hin1II CATG 2 cut(s) 431, 626
HinfI GANTC 3 cut(s) 20, 212, 254
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 3 cut(s) 61, 307, 549
Hpy188III TCNNGA 4 cut(s) 356, 358, 585, 635
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 2 cut(s) 488, 547
HpyCH4III ACNGT 1 cut(s) 656
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 5 cut(s) 110, 164, 173, 260, 393
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 179, 599
HpyF3I CTNAG 2 cut(s) 183, 518
HpySE526I ACGT 1 cut(s) 206
Hsp92II CATG 2 cut(s) 431, 626
Ksp22I TGATCA 1 cut(s) 658
Kzo9I GATC 1 cut(s) 658
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 7 cut(s) 41, 74, 78, 231, 311, 570, 591
Lsp1109I GCAGC 4 cut(s) 94, 122, 272, 614
LweI GCATC 4 cut(s) 94, 353, 402, 465
MaeI CTAG 1 cut(s) 84
MaeII ACGT 1 cut(s) 206
MalI GATC 1 cut(s) 660
MboI GATC 1 cut(s) 658
MboII GAAGA 4 cut(s) 165, 280, 562, 621
MlsI TGGCCA 1 cut(s) 649
MluCI AATT 1 cut(s) 120
MluNI TGGCCA 1 cut(s) 649
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 2 cut(s) 12, 313
MnlI CCTC 4 cut(s) 178, 363, 581, 631
Mox20I TGGCCA 1 cut(s) 649
Mph1103I ATGCAT 1 cut(s) 395
MscI TGGCCA 1 cut(s) 649
MseI TTAA 1 cut(s) 45
Msp20I TGGCCA 1 cut(s) 649
MspA1I CMGCKG 2 cut(s) 221, 605
MvnI CGCG 1 cut(s) 322
MwoI GCNNNNNNNGC 3 cut(s) 170, 179, 599
NdeII GATC 1 cut(s) 658
NlaIII CATG 2 cut(s) 431, 626
NlaIV GGNNCC 1 cut(s) 499
NsiI ATGCAT 1 cut(s) 395
PaeR7I CTCGAG 2 cut(s) 356, 367
PfeI GAWTC 2 cut(s) 212, 254
PkrI GCNGC 6 cut(s) 109, 112, 181, 262, 324, 604
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 499
PspPI GGNCC 1 cut(s) 407
PspXI VCTCGAGB 1 cut(s) 367
PsrI GAACNNNNNNTAC 2 cut(s) 481, 513
PstI CTGCAG 2 cut(s) 112, 262
PstNI CAGNNNCTG 1 cut(s) 605
PvuII CAGCTG 1 cut(s) 605
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 6 cut(s) 108, 111, 180, 261, 323, 603
Sau3AI GATC 1 cut(s) 658
Sau96I GGNCC 1 cut(s) 407
SchI GAGTC 1 cut(s) 29
SfaNI GCATC 4 cut(s) 94, 353, 402, 465
SfcI CTRYAG 3 cut(s) 108, 258, 380
Sfr274I CTCGAG 2 cut(s) 356, 367
SinI GGWCC 1 cut(s) 407
SlaI CTCGAG 2 cut(s) 356, 367
SmlI CTYRAG 4 cut(s) 266, 356, 367, 635
SmoI CTYRAG 4 cut(s) 266, 356, 367, 635
Sse9I AATT 1 cut(s) 120
SsiI CCGC 4 cut(s) 179, 221, 312, 322
SspMI CTAG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 403
TaaI ACNGT 1 cut(s) 656
TaiI ACGT 1 cut(s) 209
TaqI TCGA 6 cut(s) 145, 151, 357, 368, 396, 506
TaqII GACCGA 1 cut(s) 424
TasI AATT 1 cut(s) 120
TauI GCSGC 2 cut(s) 182, 325
TfiI GAWTC 2 cut(s) 212, 254
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 2 cut(s) 180, 661
TseI GCWGC 4 cut(s) 107, 110, 260, 602
TspDTI ATGAA 1 cut(s) 444
TspRI CASTG 2 cut(s) 180, 661
VpaK11BI GGWCC 1 cut(s) 407
XapI RAATTY 1 cut(s) 120
XcmI CCANNNNNNNNNTGG 1 cut(s) 35
XhoI CTCGAG 2 cut(s) 356, 367
XspI CTAG 1 cut(s) 84
Zsp2I ATGCAT 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.