RLG00000020126

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000760
Physical Location & Seq
Forward (+)
61370155 .. 61372303
2149 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020126

Sequence Viewer

Length: 1044 bp
ATGGTCACATTGACATCTATCAAATTTGAGTCCAAGCAAAATAAGACAACATCTAGAACAGTCAGCTTCAATAAAACTCATCTGAACAAAACAAGCAAATCTGATGGAATATATGAAGATGCTTTTGAGGAATCTACAAGCTGCAAGAAAAGAAAAATAGGAGAGCTAACTCTTGGAACAAATGTTTCATCCTCTAATACCGAGGGACATTGCCTTGATAAGTTCAAGCCAGATTATTGGATTTCTCCACGGTCCCCAAGCGAGCTTGATGAAGCTGCCACCAAGCTGCAGAAAGTTTATAAGAGTTACCGGACTAGGAGGAATCTTGCAGATTGCACTGTTATTGTAGAGGAGCTATGGTGGAAGGCATTAGACTTTGCTGCTCTTAGGCAGAGCTCTGTGTCATTTTTTGACTCAGTTAAAGCAGAAACTGCTGTTTCAAGATGGGCACGGGCTAGGACCAGAGCTGCCAAGATTGATCCACGCCATCGTTATGGACAAAATCTGTACTTGTATTATGATGTGTGGTTTAATAGTGGGAGCTTTCAACCTTTCTTCTACTGGTTGGATGTTGGAGATGGCAAAGAAGTGAATCTCGACAAGTGCCCAAGAACTGAACTGCATCATCAATGCATTAAATACCTTGGACCAAAAGAGAGGGATGCTTATGAAGTGATTGTGGAAAGTGGGAAGCTTATGTACAAACAAAGTGGGAACCTTGTGAATACTCCTGAAGGTTCTAAATGGATCTTTGTACTCAGCACATCAAGGAACATGTACGTAGGGGAGAAGAAGAAAGGCCTTTTCCAGCACTCTAGTTTTCTAGCTGGAGGTGCCACCATTGCAGCCGGAAGACTGGTTGCTCTTAATGGGCTTCTTGAGGCTGCGTGGTCCTATAGCGGTTATTATCGCCCAACAGAAGAGAATTTCATGGAATTCATTAGTTTCTTAGAGAAGCTTCATGTGGACTTGACAGATGTTAAAAAATATCCGATAGATGATGATATTCCACCTTCATCTGCTACCAAGAAAGAAATAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ

Protein Analysis

348

Amino Acids

39.67

Weight (kDa)

8.92

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 833
AciI CCGC 1 cut(s) 900
AclWI GGATC 2 cut(s) 473, 755
AcsI RAATTY 3 cut(s) 23, 925, 935
AcuI CTGAAG 1 cut(s) 753
AfaI GTAC 4 cut(s) 509, 701, 756, 779
AflIII ACRYGT 1 cut(s) 774
AgsI TTSAA 4 cut(s) 70, 226, 441, 548
Alw21I GWGCWC 1 cut(s) 398
AlwI GGATC 2 cut(s) 473, 755
AlwNI CAGNNNCTG 1 cut(s) 431
AoxI GGCC 1 cut(s) 799
ApeKI GCWGC 7 cut(s) 141, 275, 286, 380, 467, 845, 884
ApoI RAATTY 3 cut(s) 23, 925, 935
AspS9I GGNCC 4 cut(s) 252, 459, 647, 891
AvaII GGWCC 4 cut(s) 252, 459, 647, 891
BaeGI GKGCMC 2 cut(s) 451, 608
BanI GGYRCC 1 cut(s) 833
BanII GRGCYC 1 cut(s) 398
BarI GAAGNNNNNNTAC 2 cut(s) 683, 715
BbsI GAAGAC 1 cut(s) 859
Bbv12I GWGCWC 1 cut(s) 398
BbvI GCAGC 7 cut(s) 128, 262, 273, 367, 454, 857, 871
BccI CCATC 4 cut(s) 98, 438, 495, 572
BfaI CTAG 5 cut(s) 54, 315, 456, 816, 824
BfmI CTRYAG 2 cut(s) 287, 895
BisI GCNGC 7 cut(s) 142, 276, 287, 381, 468, 846, 885
BlsI GCNGC 7 cut(s) 143, 277, 288, 382, 469, 847, 886
Bme18I GGWCC 4 cut(s) 252, 459, 647, 891
BmgT120I GGNCC 4 cut(s) 252, 459, 647, 891
BmiI GGNNCC 3 cut(s) 254, 716, 835
BmsI GCATC 3 cut(s) 109, 631, 652
BpiI GAAGAC 1 cut(s) 859
BpmI CTGGAG 1 cut(s) 849
BpuEI CTTGAG 1 cut(s) 899
BsaAI YACGTR 1 cut(s) 781
BsaJI CCNNGG 3 cut(s) 201, 248, 643
BsaWI WCCGGW 1 cut(s) 309
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bse1I ACTGG 2 cut(s) 566, 861
Bse3DI GCAATG 2 cut(s) 208, 840
BseDI CCNNGG 3 cut(s) 201, 248, 643
BseGI GGATG 3 cut(s) 188, 574, 667
BseMI GCAATG 2 cut(s) 208, 840
BseMII CTCAG 2 cut(s) 429, 772
BseNI ACTGG 2 cut(s) 566, 861
BseRI GAGGAG 1 cut(s) 365
BseSI GKGCMC 2 cut(s) 451, 608
BseXI GCAGC 7 cut(s) 128, 262, 273, 367, 454, 857, 871
BshFI GGCC 1 cut(s) 801
BshNI GGYRCC 1 cut(s) 833
BsiHKAI GWGCWC 1 cut(s) 398
BsiSI CCGG 2 cut(s) 310, 849
BslFI GGGAC 2 cut(s) 219, 238
BsmFI GGGAC 2 cut(s) 219, 238
BsnI GGCC 1 cut(s) 801
Bsp1286I GDGCHC 3 cut(s) 398, 451, 608
Bsp1407I TGTACA 1 cut(s) 699
Bsp143I GATC 2 cut(s) 478, 747
BspACI CCGC 1 cut(s) 900
BspANI GGCC 1 cut(s) 801
BspCNI CTCAG 2 cut(s) 428, 771
BspLI GGNNCC 3 cut(s) 254, 716, 835
BspMAI CTGCAG 1 cut(s) 291
BspPI GGATC 2 cut(s) 473, 755
BspT107I GGYRCC 1 cut(s) 833
BsrDI GCAATG 2 cut(s) 208, 840
BsrGI TGTACA 1 cut(s) 699
BsrI ACTGG 2 cut(s) 566, 861
BssECI CCNNGG 3 cut(s) 201, 248, 643
BssMI GATC 2 cut(s) 478, 747
BssT1I CCWWGG 1 cut(s) 643
Bst4CI ACNGT 3 cut(s) 61, 252, 340
Bst6I CTCTTC 1 cut(s) 915
BstAPI GCANNNNNTGC 1 cut(s) 431
BstAUI TGTACA 1 cut(s) 699
BstBAI YACGTR 1 cut(s) 781
BstC8I GCNNGC 1 cut(s) 263
BstDEI CTNAG 4 cut(s) 386, 415, 758, 949
BstDSI CCRYGG 1 cut(s) 248
BstF5I GGATG 3 cut(s) 188, 574, 667
BstKTI GATC 2 cut(s) 481, 750
BstMBI GATC 2 cut(s) 478, 747
BstMWI GCNNNNNNNGC 3 cut(s) 431, 833, 842
BstNSI RCATGY 1 cut(s) 778
BstSFI CTRYAG 2 cut(s) 287, 895
BstSLI GKGCMC 2 cut(s) 451, 608
BstSNI TACGTA 1 cut(s) 781
BstV1I GCAGC 7 cut(s) 128, 262, 273, 367, 454, 857, 871
BstV2I GAAGAC 1 cut(s) 859
BstX2I RGATCY 1 cut(s) 747
BstXI CCANNNNNNTGG 2 cut(s) 237, 494
BstYI RGATCY 1 cut(s) 747
BsuRI GGCC 1 cut(s) 801
BtgI CCRYGG 1 cut(s) 248
BtsCI GGATG 3 cut(s) 188, 574, 667
BtsIMutI CAGTG 1 cut(s) 336
Cac8I GCNNGC 1 cut(s) 263
CaiI CAGNNNCTG 1 cut(s) 431
Cfr13I GGNCC 4 cut(s) 252, 459, 647, 891
Csp6I GTAC 4 cut(s) 508, 700, 755, 778
CspCI CAANNNNNGTGG 2 cut(s) 691, 726
CviAII CATG 3 cut(s) 775, 931, 962
CviQI GTAC 4 cut(s) 508, 700, 755, 778
DdeI CTNAG 4 cut(s) 386, 415, 758, 949
DpnI GATC 2 cut(s) 480, 749
DpnII GATC 2 cut(s) 478, 747
Eam1104I CTCTTC 1 cut(s) 915
EarI CTCTTC 1 cut(s) 915
Ecl136II GAGCTC 1 cut(s) 396
Eco105I TACGTA 1 cut(s) 781
Eco130I CCWWGG 1 cut(s) 643
Eco147I AGGCCT 1 cut(s) 801
Eco24I GRGCYC 1 cut(s) 398
Eco47I GGWCC 4 cut(s) 252, 459, 647, 891
Eco53kI GAGCTC 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 753
EcoICRI GAGCTC 1 cut(s) 396
EcoRI GAATTC 1 cut(s) 935
EcoT14I CCWWGG 1 cut(s) 643
EcoT22I ATGCAT 1 cut(s) 635
EcoT38I GRGCYC 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 643
FaeI CATG 3 cut(s) 778, 934, 965
FaqI GGGAC 2 cut(s) 219, 238
FatI CATG 3 cut(s) 774, 930, 961
Fnu4HI GCNGC 7 cut(s) 142, 276, 287, 381, 468, 846, 885
FokI GGATG 3 cut(s) 175, 581, 674
FriOI GRGCYC 1 cut(s) 398
Fsp4HI GCNGC 7 cut(s) 142, 276, 287, 381, 468, 846, 885
FspBI CTAG 5 cut(s) 54, 315, 456, 816, 824
GluI GCNGC 7 cut(s) 142, 276, 287, 381, 468, 846, 885
GsuI CTGGAG 1 cut(s) 849
HaeIII GGCC 1 cut(s) 801
HapII CCGG 2 cut(s) 310, 849
Hin1II CATG 3 cut(s) 778, 934, 965
HindIII AAGCTT 2 cut(s) 692, 956
HinfI GANTC 5 cut(s) 29, 131, 322, 413, 592
HpaII CCGG 2 cut(s) 310, 849
Hpy166II GTNNAC 1 cut(s) 967
Hpy188I TCNGA 3 cut(s) 84, 103, 993
Hpy188III TCNNGA 5 cut(s) 54, 441, 596, 731, 878
Hpy8I GTNNAC 1 cut(s) 967
HpyAV CCTTC 3 cut(s) 358, 728, 1023
HpyCH4III ACNGT 3 cut(s) 61, 252, 340
HpyCH4IV ACGT 1 cut(s) 780
HpyCH4V TGCA 7 cut(s) 144, 289, 329, 336, 622, 633, 845
HpyF10VI GCNNNNNNNGC 3 cut(s) 431, 833, 842
HpyF3I CTNAG 4 cut(s) 386, 415, 758, 949
HpySE526I ACGT 1 cut(s) 780
Hsp92II CATG 3 cut(s) 778, 934, 965
Kzo9I GATC 2 cut(s) 478, 747
LmnI GCTCC 2 cut(s) 352, 540
LpnPI CCDG 9 cut(s) 243, 323, 475, 547, 744, 813, 821, 842, 862
Lsp1109I GCAGC 7 cut(s) 128, 262, 273, 367, 454, 857, 871
LweI GCATC 3 cut(s) 109, 631, 652
MaeI CTAG 5 cut(s) 54, 315, 456, 816, 824
MaeII ACGT 1 cut(s) 780
MaeIII GTNAC 2 cut(s) 4, 305
MalI GATC 2 cut(s) 480, 749
MboI GATC 2 cut(s) 478, 747
MboII GAAGA 6 cut(s) 128, 547, 802, 805, 864, 932
MflI RGATCY 1 cut(s) 747
MhlI GDGCHC 3 cut(s) 398, 451, 608
MluCI AATT 3 cut(s) 23, 925, 935
MlyI GAGTC 2 cut(s) 38, 407
MmeI TCCRAC 2 cut(s) 546, 553
MnlI CCTC 8 cut(s) 121, 196, 202, 312, 343, 651, 824, 874
Mph1103I ATGCAT 1 cut(s) 635
MseI TTAA 5 cut(s) 420, 531, 636, 867, 981
MslI CAYNNNNRTG 1 cut(s) 492
MspI CCGG 2 cut(s) 310, 849
MwoI GCNNNNNNNGC 3 cut(s) 431, 833, 842
NdeII GATC 2 cut(s) 478, 747
NlaIII CATG 3 cut(s) 778, 934, 965
NlaIV GGNNCC 3 cut(s) 254, 716, 835
NmuCI GTSAC 1 cut(s) 4
NsiI ATGCAT 1 cut(s) 635
NspI RCATGY 1 cut(s) 778
PceI AGGCCT 1 cut(s) 801
PciI ACATGT 1 cut(s) 774
PfeI GAWTC 3 cut(s) 131, 322, 592
PkrI GCNGC 7 cut(s) 143, 277, 288, 382, 469, 847, 886
PleI GAGTC 2 cut(s) 37, 407
PpsI GAGTC 2 cut(s) 37, 407
Ppu21I YACGTR 1 cut(s) 781
PscI ACATGT 1 cut(s) 774
PsiI TTATAA 1 cut(s) 300
Psp124BI GAGCTC 1 cut(s) 398
PspN4I GGNNCC 3 cut(s) 254, 716, 835
PspPI GGNCC 4 cut(s) 252, 459, 647, 891
PstI CTGCAG 1 cut(s) 291
PstNI CAGNNNCTG 1 cut(s) 431
PsuI RGATCY 1 cut(s) 747
RsaI GTAC 4 cut(s) 509, 701, 756, 779
RsaNI GTAC 4 cut(s) 508, 700, 755, 778
RseI CAYNNNNRTG 1 cut(s) 492
SacI GAGCTC 1 cut(s) 398
SaqAI TTAA 5 cut(s) 420, 531, 636, 867, 981
SatI GCNGC 7 cut(s) 142, 276, 287, 381, 468, 846, 885
Sau3AI GATC 2 cut(s) 478, 747
Sau96I GGNCC 4 cut(s) 252, 459, 647, 891
SchI GAGTC 2 cut(s) 38, 407
SduI GDGCHC 3 cut(s) 398, 451, 608
SfaNI GCATC 3 cut(s) 109, 631, 652
SfcI CTRYAG 2 cut(s) 287, 895
SinI GGWCC 4 cut(s) 252, 459, 647, 891
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 878
SmoI CTYRAG 1 cut(s) 878
SnaBI TACGTA 1 cut(s) 781
Sse9I AATT 3 cut(s) 23, 925, 935
SseBI AGGCCT 1 cut(s) 801
SsiI CCGC 1 cut(s) 900
SspMI CTAG 5 cut(s) 54, 315, 456, 816, 824
SstI GAGCTC 1 cut(s) 398
StuI AGGCCT 1 cut(s) 801
StyI CCWWGG 1 cut(s) 643
TaaI ACNGT 3 cut(s) 61, 252, 340
TaiI ACGT 1 cut(s) 783
TaqI TCGA 1 cut(s) 597
TasI AATT 3 cut(s) 23, 925, 935
TatI WGTACW 3 cut(s) 507, 699, 754
TfiI GAWTC 3 cut(s) 131, 322, 592
Tru1I TTAA 5 cut(s) 420, 531, 636, 867, 981
Tru9I TTAA 5 cut(s) 420, 531, 636, 867, 981
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 7 cut(s) 141, 275, 286, 380, 467, 845, 884
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 8 cut(s) 129, 177, 285, 684, 919, 928, 950, 1005
TspRI CASTG 1 cut(s) 343
VpaK11BI GGWCC 4 cut(s) 252, 459, 647, 891
XapI RAATTY 3 cut(s) 23, 925, 935
XbaI TCTAGA 1 cut(s) 53
XceI RCATGY 1 cut(s) 778
XspI CTAG 5 cut(s) 54, 315, 456, 816, 824
Zsp2I ATGCAT 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.