Rh3AG094600

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000760
Physical Location & Seq
Reverse (-)
7757866 .. 7760011
2146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG094600.1

Sequence Viewer

Length: 1056 bp
ATGTCTTTCTCCAATGTTGAGTCTAACCAGTTGGATGGTGGCCTTGACAATGCTCTGTCTGAACCAGCAATCTTGTTTTTGCCTAGACTGGTTAGAGAGCTTGATGCTGCAGCAGTCAAAATTCAAAAGGTTTACAAGAGTTATCGAACTCGAAGAAACCTTGCAGATTGTGCAGTGGCGGCTGAGGAGCTATGGTGGAGAGATACGTTAGATTCTCCAGCGGGTGCTAAAGAGCTATGGTGGAAAACTTTAGATTCTGCAGCTCTCAAGCAGAGTTCTGTGTCATTCTTCAATGTTGAGAAGTCAGAAACCGCCGTTTCGCGGTGGATTGGAAAAGGTTTGTCTAAGGATGAGAACGCACAAATGTTAGCGCTTCAACATTGGCTTGAAGCTATTGATCCACGCCACCGGTATGGACACAATTTACATTTCTATTATGATTTGTGGTTTGAAAGTGAGAGCAGTCAGCCTTTCTTCTACTGGCTGGATGTTGGAGATGGCAAAGAAATAAATCTCGAGAGATGCTCGAGGACAGCTCTACAGCACCAATGCATCGAGTACCTTGGACCGAAAGAAAGGAAATCCCATGAAGTATTAGTGGAAAATGGCAAGCTAATGTATAAGCAAAGTGGGATGCTTGTGAATAGTAGTGAAGGTTCCAAATCGATATTCGTGCTAAGCACAACAAGGGCTTTGTATGTTGGTCAGAAGAAGGGTCAGTTTGACCATTTGAGTTTTCTATCTGGAGGTGCTACCACAGCAGCTGGAAGATTGGTTGCCCATGATGCGGTTCTTGAGAGGTGTGCAATTGATGATGACTATCCTTCAATGAAGAAAACTGAAGGGGAACTAACAAAGCAAAACTCATTTAAGTCGACCCAATCGGATGGCGCAAACACATCAAATGTCGATGACTTGACCGAGAAGGCACCGATCCCCGCCGTTCGTTCGGAAGTTAATGATGGCAGTGCAAACCACCAATGTTCACCATGGGCATGCCCTTGCCTTGTCTACTGGAACTGGAGCCCGAATCGGGTGTTTGCGAGACTACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

351

Amino Acids

39.51

Weight (kDa)

6.03

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 928
AccI GTMKAC 2 cut(s) 875, 1011
AccII CGCG 1 cut(s) 322
AciI CCGC 6 cut(s) 179, 221, 312, 322, 788, 939
AclWI GGATC 2 cut(s) 392, 928
AcsI RAATTY 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 861
AfaI GTAC 1 cut(s) 560
AfeI AGCGCT 1 cut(s) 372
AfiI CCNNNNNNNGG 3 cut(s) 321, 787, 1033
AgeI ACCGGT 1 cut(s) 408
AgsI TTSAA 6 cut(s) 125, 292, 377, 389, 452, 828
AjuI GAANNNNNNNTTGG 2 cut(s) 653, 685
AluBI AGCT 8 cut(s) 100, 190, 235, 263, 392, 536, 613, 764
AluI AGCT 8 cut(s) 100, 190, 235, 263, 392, 536, 613, 764
Alw26I GTCTC 1 cut(s) 1039
AlwI GGATC 2 cut(s) 392, 928
AlwNI CAGNNNCTG 1 cut(s) 764
Ama87I CYCGRG 2 cut(s) 515, 526
Aor51HI AGCGCT 1 cut(s) 372
AoxI GGCC 1 cut(s) 40
ApeKI GCWGC 4 cut(s) 107, 110, 260, 761
ApoI RAATTY 1 cut(s) 120
AsiGI ACCGGT 1 cut(s) 408
AspLEI GCGC 2 cut(s) 373, 893
AspS9I GGNCC 1 cut(s) 566
AsuHPI GGTGA 1 cut(s) 978
AvaI CYCGRG 2 cut(s) 515, 526
AvaII GGWCC 1 cut(s) 566
BanI GGYRCC 1 cut(s) 928
BanII GRGCYC 1 cut(s) 1028
BbvCI CCTCAGC 1 cut(s) 183
BbvI GCAGC 4 cut(s) 94, 122, 272, 773
BccI CCATC 4 cut(s) 29, 491, 881, 956
BceAI ACGGC 2 cut(s) 299, 926
BcgI CGANNNNNNTGC 2 cut(s) 655, 689
BcoDI GTCTC 1 cut(s) 1039
BfaI CTAG 2 cut(s) 84, 1054
BfmI CTRYAG 3 cut(s) 108, 258, 539
BfoI RGCGCY 1 cut(s) 374
BisI GCNGC 5 cut(s) 108, 111, 180, 261, 762
BlpI GCTNAGC 1 cut(s) 677
BlsI GCNGC 5 cut(s) 109, 112, 181, 262, 763
Bme18I GGWCC 1 cut(s) 566
BmeT110I CYCGRG 2 cut(s) 515, 526
BmgT120I GGNCC 1 cut(s) 566
BmiI GGNNCC 3 cut(s) 658, 930, 1025
BmsI GCATC 5 cut(s) 94, 512, 561, 624, 775
BplI GAGNNNNNCTC 4 cut(s) 509, 541, 520, 552
BpmI CTGGAG 3 cut(s) 201, 765, 1042
Bpu10I CCTNAGC 1 cut(s) 183
Bpu1102I GCTNAGC 1 cut(s) 677
BpuEI CTTGAG 2 cut(s) 251, 815
Bsa29I ATCGAT 1 cut(s) 665
BsaBI GATNNNNATC 1 cut(s) 819
BsaJI CCNNGG 2 cut(s) 562, 989
BsaWI WCCGGW 1 cut(s) 408
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 3 cut(s) 321, 787, 1033
Bse118I RCCGGY 1 cut(s) 408
Bse1I ACTGG 5 cut(s) 28, 93, 485, 1019, 1025
Bse8I GATNNNNATC 1 cut(s) 819
BseCI ATCGAT 1 cut(s) 665
BseDI CCNNGG 2 cut(s) 562, 989
BseGI GGATG 5 cut(s) 40, 355, 493, 639, 892
BseJI GATNNNNATC 1 cut(s) 819
BseLI CCNNNNNNNGG 3 cut(s) 321, 787, 1033
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 5 cut(s) 28, 93, 485, 1019, 1025
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 4 cut(s) 94, 122, 272, 773
BsgI GTGCAG 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 322
BshFI GGCC 1 cut(s) 42
BshNI GGYRCC 1 cut(s) 928
BshTI ACCGGT 1 cut(s) 408
BshVI ATCGAT 1 cut(s) 665
BsiHKCI CYCGRG 2 cut(s) 515, 526
BsiSI CCGG 1 cut(s) 409
BslI CCNNNNNNNGG 3 cut(s) 321, 787, 1033
BsmAI GTCTC 1 cut(s) 1039
BsnI GGCC 1 cut(s) 42
BsoBI CYCGRG 2 cut(s) 515, 526
Bsp1286I GDGCHC 1 cut(s) 1028
Bsp143I GATC 2 cut(s) 397, 933
Bsp1720I GCTNAGC 1 cut(s) 677
Bsp19I CCATGG 1 cut(s) 989
BspACI CCGC 6 cut(s) 179, 221, 312, 322, 788, 939
BspANI GGCC 1 cut(s) 42
BspCNI CTCAG 1 cut(s) 175
BspDI ATCGAT 1 cut(s) 665
BspFNI CGCG 1 cut(s) 322
BspLI GGNNCC 3 cut(s) 658, 930, 1025
BspMAI CTGCAG 2 cut(s) 112, 262
BspPI GGATC 2 cut(s) 392, 928
BspT107I GGYRCC 1 cut(s) 928
BsrFI RCCGGY 1 cut(s) 408
BsrI ACTGG 5 cut(s) 28, 93, 485, 1019, 1025
BssAI RCCGGY 1 cut(s) 408
BssECI CCNNGG 2 cut(s) 562, 989
BssMI GATC 2 cut(s) 397, 933
BssT1I CCWWGG 2 cut(s) 562, 989
BstAPI GCANNNNNTGC 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 611, 997
BstDEI CTNAG 3 cut(s) 183, 345, 677
BstDSI CCRYGG 1 cut(s) 989
BstF5I GGATG 5 cut(s) 40, 355, 493, 639, 892
BstFNI CGCG 1 cut(s) 322
BstH2I RGCGCY 1 cut(s) 374
BstHHI GCGC 2 cut(s) 373, 893
BstKTI GATC 2 cut(s) 400, 936
BstMAI GTCTC 1 cut(s) 1039
BstMBI GATC 2 cut(s) 397, 933
BstMWI GCNNNNNNNGC 4 cut(s) 170, 179, 758, 785
BstNSI RCATGY 1 cut(s) 999
BstSFI CTRYAG 3 cut(s) 108, 258, 539
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 4 cut(s) 94, 122, 272, 773
BstXI CCANNNNNNTGG 3 cut(s) 35, 413, 887
Bsu15I ATCGAT 1 cut(s) 665
BsuRI GGCC 1 cut(s) 42
BsuTUI ATCGAT 1 cut(s) 665
BtgI CCRYGG 1 cut(s) 989
BtsCI GGATG 5 cut(s) 40, 355, 493, 639, 892
BtsI GCAGTG 2 cut(s) 180, 973
BtsIMutI CAGTG 2 cut(s) 180, 973
Cac8I GCNNGC 2 cut(s) 611, 997
CaiI CAGNNNCTG 1 cut(s) 764
CfoI GCGC 2 cut(s) 373, 893
Cfr10I RCCGGY 1 cut(s) 408
Cfr13I GGNCC 1 cut(s) 566
ClaI ATCGAT 1 cut(s) 665
Csp6I GTAC 1 cut(s) 559
CspAI ACCGGT 1 cut(s) 408
CviAII CATG 4 cut(s) 587, 782, 990, 996
CviQI GTAC 1 cut(s) 559
DdeI CTNAG 3 cut(s) 183, 345, 677
DpnI GATC 2 cut(s) 399, 935
DpnII GATC 2 cut(s) 397, 933
Eco130I CCWWGG 2 cut(s) 562, 989
Eco24I GRGCYC 1 cut(s) 1028
Eco47I GGWCC 1 cut(s) 566
Eco47III AGCGCT 1 cut(s) 372
Eco57I CTGAAG 1 cut(s) 861
Eco88I CYCGRG 2 cut(s) 515, 526
EcoT14I CCWWGG 2 cut(s) 562, 989
EcoT22I ATGCAT 1 cut(s) 554
EcoT38I GRGCYC 1 cut(s) 1028
ErhI CCWWGG 2 cut(s) 562, 989
FaeI CATG 4 cut(s) 590, 785, 993, 999
FatI CATG 4 cut(s) 586, 781, 989, 995
FauI CCCGC 2 cut(s) 214, 946
FblI GTMKAC 2 cut(s) 875, 1011
Fnu4HI GCNGC 5 cut(s) 108, 111, 180, 261, 762
FokI GGATG 5 cut(s) 47, 362, 500, 646, 899
FriOI GRGCYC 1 cut(s) 1028
Fsp4HI GCNGC 5 cut(s) 108, 111, 180, 261, 762
FspBI CTAG 2 cut(s) 84, 1054
GlaI GCGC 2 cut(s) 372, 892
GluI GCNGC 5 cut(s) 108, 111, 180, 261, 762
GsuI CTGGAG 3 cut(s) 201, 765, 1042
HaeII RGCGCY 1 cut(s) 374
HaeIII GGCC 1 cut(s) 42
HapII CCGG 1 cut(s) 409
HhaI GCGC 2 cut(s) 373, 893
Hin1II CATG 4 cut(s) 590, 785, 993, 999
Hin6I GCGC 2 cut(s) 371, 891
HinP1I GCGC 2 cut(s) 371, 891
HincII GTYRAC 1 cut(s) 876
HindII GTYRAC 1 cut(s) 876
HinfI GANTC 4 cut(s) 20, 212, 254, 1030
HpaII CCGG 1 cut(s) 409
HphI GGTGA 1 cut(s) 978
Hpy166II GTNNAC 4 cut(s) 133, 876, 986, 1012
Hpy188I TCNGA 5 cut(s) 61, 307, 708, 886, 952
Hpy188III TCNNGA 4 cut(s) 515, 517, 744, 794
Hpy8I GTNNAC 4 cut(s) 133, 876, 986, 1012
HpyAV CCTTC 5 cut(s) 647, 706, 834, 836, 919
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 7 cut(s) 110, 164, 173, 260, 552, 806, 971
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 179, 758, 785
HpyF3I CTNAG 3 cut(s) 183, 345, 677
HpySE526I ACGT 1 cut(s) 206
Hsp92II CATG 4 cut(s) 590, 785, 993, 999
HspAI GCGC 2 cut(s) 371, 891
Kzo9I GATC 2 cut(s) 397, 933
LmnI GCTCC 2 cut(s) 187, 1023
Lsp1109I GCAGC 4 cut(s) 94, 122, 272, 773
LweI GCATC 5 cut(s) 94, 512, 561, 624, 775
MaeI CTAG 2 cut(s) 84, 1054
MaeII ACGT 1 cut(s) 206
MalI GATC 2 cut(s) 399, 935
MboI GATC 2 cut(s) 397, 933
MboII GAAGA 6 cut(s) 165, 280, 466, 721, 780, 844
MfeI CAATTG 1 cut(s) 807
MhlI GDGCHC 1 cut(s) 1028
MluCI AATT 3 cut(s) 120, 421, 807
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 2 cut(s) 12, 472
MnlI CCTC 4 cut(s) 178, 522, 740, 792
Mph1103I ATGCAT 1 cut(s) 554
MseI TTAA 2 cut(s) 870, 957
MslI CAYNNNNRTG 2 cut(s) 411, 994
MspA1I CMGCKG 2 cut(s) 221, 764
MspI CCGG 1 cut(s) 409
MunI CAATTG 1 cut(s) 807
MvnI CGCG 1 cut(s) 322
MwoI GCNNNNNNNGC 4 cut(s) 170, 179, 758, 785
NcoI CCATGG 1 cut(s) 989
NdeII GATC 2 cut(s) 397, 933
NlaIII CATG 4 cut(s) 590, 785, 993, 999
NlaIV GGNNCC 3 cut(s) 658, 930, 1025
NsiI ATGCAT 1 cut(s) 554
NspI RCATGY 1 cut(s) 999
PaeI GCATGC 1 cut(s) 999
PaeR7I CTCGAG 2 cut(s) 515, 526
PfeI GAWTC 3 cut(s) 212, 254, 1030
PinAI ACCGGT 1 cut(s) 408
PkrI GCNGC 5 cut(s) 109, 112, 181, 262, 763
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PspN4I GGNNCC 3 cut(s) 658, 930, 1025
PspPI GGNCC 1 cut(s) 566
PspXI VCTCGAGB 1 cut(s) 526
PsrI GAACNNNNNNTAC 2 cut(s) 640, 672
PstI CTGCAG 2 cut(s) 112, 262
PstNI CAGNNNCTG 1 cut(s) 764
PvuII CAGCTG 1 cut(s) 764
RsaI GTAC 1 cut(s) 560
RsaNI GTAC 1 cut(s) 559
RseI CAYNNNNRTG 2 cut(s) 411, 994
SalI GTCGAC 1 cut(s) 874
SaqAI TTAA 2 cut(s) 870, 957
SatI GCNGC 5 cut(s) 108, 111, 180, 261, 762
Sau3AI GATC 2 cut(s) 397, 933
Sau96I GGNCC 1 cut(s) 566
SchI GAGTC 1 cut(s) 29
SduI GDGCHC 1 cut(s) 1028
SfaNI GCATC 5 cut(s) 94, 512, 561, 624, 775
SfcI CTRYAG 3 cut(s) 108, 258, 539
Sfr274I CTCGAG 2 cut(s) 515, 526
SinI GGWCC 1 cut(s) 566
SlaI CTCGAG 2 cut(s) 515, 526
SmiMI CAYNNNNRTG 2 cut(s) 411, 994
SmlI CTYRAG 4 cut(s) 266, 515, 526, 794
SmoI CTYRAG 4 cut(s) 266, 515, 526, 794
SphI GCATGC 1 cut(s) 999
Sse9I AATT 3 cut(s) 120, 421, 807
SsiI CCGC 6 cut(s) 179, 221, 312, 322, 788, 939
SspMI CTAG 2 cut(s) 84, 1054
StyI CCWWGG 2 cut(s) 562, 989
TaiI ACGT 1 cut(s) 209
TaqI TCGA 8 cut(s) 145, 151, 516, 527, 555, 665, 875, 909
TaqII GACCGA 2 cut(s) 583, 935
TasI AATT 3 cut(s) 120, 421, 807
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 3 cut(s) 212, 254, 1030
Tru1I TTAA 2 cut(s) 870, 957
Tru9I TTAA 2 cut(s) 870, 957
TscAI CASTG 2 cut(s) 180, 973
TseI GCWGC 4 cut(s) 107, 110, 260, 761
TspDTI ATGAA 2 cut(s) 603, 845
TspRI CASTG 2 cut(s) 180, 973
VpaK11BI GGWCC 1 cut(s) 566
XapI RAATTY 1 cut(s) 120
XceI RCATGY 1 cut(s) 999
XcmI CCANNNNNNNNNTGG 1 cut(s) 35
XhoI CTCGAG 2 cut(s) 515, 526
XmiI GTMKAC 2 cut(s) 875, 1011
XspI CTAG 2 cut(s) 84, 1054
Zsp2I ATGCAT 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.