Rw2G036230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000760
Physical Location & Seq
Forward (+)
59532926 .. 59535352
2427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G036230.1

Sequence Viewer

Length: 1110 bp
ATGGTCACATTGACATCTATCAAATTTGAGTCCAAGCAAAATAAGACAACATCTAGAACAGTCAGCTTCAATAAAACTTATCTGAACAAAACAAGCAAATCTGATGGAATATATGAAGATGCTGTTGAGGAATCTACAAGCTGCAAGAAAAGGAAAATAGGAGAACTAACTCTTGGAACAAATGTTTCATCCTATAATACCGAGGGAAATTGCGTTGATAAGTTCAAGCCAGATTATTGGATTTCTCCACGGTCCCCAAGTGAGCTTGATGAAGCTGCCACCAAGCTGCATAAAGTTTATAAGAGTTACCGGACTAGGAGGAATCTTGCAGATTGCACTGTTATTGTAGGGGAGCTATGGTGGAAGGCATTAGACTTTGCTGCTCTTAGGCAGAGCTCTGTGTCATTTTTTGACTCAGTTAAAGCAGAAACTGCTGTTTCAAGATGGGCACGGGCTAGGACCAGAGCTGCCAAGGTTGGTAAAGGTCTGTCCAAGGATGAGAAGGCCAAGAAGTTAGCTCTAAGACATTGGCTTGAGGCTATTGATCCACGCCATCGTTATGGACAGAATCTGTACTTGTATTATGATGTGTGGTTTAATAGTGGGAGCTTTCAACCTTTCTTCTACTGGCTGGATGTTGGAGATGGCAAAGAAGTGAATCTCGACAAGTGCCCAAGAACTGAACTGCATCATCAATGCATTAAATACCTTGGACCAAAAGAGAGGGATGCTTATGAAGTGATTGTGGAAAGTGGGAAGCTTATGTACAAACAAAGTGGGAACCTTGTGAATACTCCTGAAGGTTCTAAATGGATCTTTGTACTCAGCACATCAAGGAACATGTACGTAGGGGAGAAGAAGAAACGCCTTTTCCAGCACTCTAGTTTTCTAGCTGGAGGTGCCACCATTGCAGCCGGAAGACTGGTTGCTCTTAATGGGCTTCTTGAGGCTGTATGGTCCTATAGCGGTCATTATTGCCCAACAGAAGAGAATTTCATGGAATTCATTAGTTTCTTAGAGGAGCTTCATGTGGACTTGACAGATGTTAAAAAATATCCGATAGATGATGATATTCCACCTTCATCTGCTACCAAGAAAGAAATAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ

Protein Analysis

369

Amino Acids

42.13

Weight (kDa)

9.01

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 899
AciI CCGC 1 cut(s) 966
AclWI GGATC 2 cut(s) 539, 821
AcsI RAATTY 3 cut(s) 23, 991, 1001
AcuI CTGAAG 1 cut(s) 819
AfaI GTAC 4 cut(s) 575, 767, 822, 845
AflIII ACRYGT 1 cut(s) 840
AgsI TTSAA 4 cut(s) 70, 226, 441, 614
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
Alw21I GWGCWC 1 cut(s) 398
AlwI GGATC 2 cut(s) 539, 821
AlwNI CAGNNNCTG 2 cut(s) 431, 571
AoxI GGCC 1 cut(s) 504
ApeKI GCWGC 6 cut(s) 141, 275, 286, 380, 467, 911
ApoI RAATTY 3 cut(s) 23, 991, 1001
AspS9I GGNCC 4 cut(s) 252, 459, 713, 957
AvaII GGWCC 4 cut(s) 252, 459, 713, 957
BaeGI GKGCMC 2 cut(s) 451, 674
BanI GGYRCC 1 cut(s) 899
BanII GRGCYC 1 cut(s) 398
BarI GAAGNNNNNNTAC 2 cut(s) 749, 781
BbsI GAAGAC 1 cut(s) 925
Bbv12I GWGCWC 1 cut(s) 398
BbvI GCAGC 6 cut(s) 128, 262, 273, 367, 454, 923
BccI CCATC 4 cut(s) 98, 438, 561, 638
BfaI CTAG 5 cut(s) 54, 315, 456, 882, 890
BfmI CTRYAG 1 cut(s) 961
BisI GCNGC 6 cut(s) 142, 276, 287, 381, 468, 912
BlsI GCNGC 6 cut(s) 143, 277, 288, 382, 469, 913
Bme18I GGWCC 4 cut(s) 252, 459, 713, 957
BmgT120I GGNCC 4 cut(s) 252, 459, 713, 957
BmiI GGNNCC 3 cut(s) 254, 782, 901
BmsI GCATC 3 cut(s) 109, 697, 718
BpiI GAAGAC 1 cut(s) 925
BpmI CTGGAG 1 cut(s) 915
BpuEI CTTGAG 2 cut(s) 554, 965
BsaAI YACGTR 1 cut(s) 847
BsaJI CCNNGG 5 cut(s) 201, 248, 471, 492, 709
BsaWI WCCGGW 1 cut(s) 309
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bse1I ACTGG 2 cut(s) 632, 927
Bse3DI GCAATG 1 cut(s) 906
BseDI CCNNGG 5 cut(s) 201, 248, 471, 492, 709
BseGI GGATG 4 cut(s) 188, 502, 640, 733
BseMI GCAATG 1 cut(s) 906
BseMII CTCAG 2 cut(s) 429, 838
BseNI ACTGG 2 cut(s) 632, 927
BseRI GAGGAG 1 cut(s) 1034
BseSI GKGCMC 2 cut(s) 451, 674
BseXI GCAGC 6 cut(s) 128, 262, 273, 367, 454, 923
BshFI GGCC 1 cut(s) 506
BshNI GGYRCC 1 cut(s) 899
BsiHKAI GWGCWC 1 cut(s) 398
BsiSI CCGG 2 cut(s) 310, 915
BslFI GGGAC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 1 cut(s) 506
Bsp1286I GDGCHC 3 cut(s) 398, 451, 674
Bsp1407I TGTACA 1 cut(s) 765
Bsp143I GATC 2 cut(s) 544, 813
BspACI CCGC 1 cut(s) 966
BspANI GGCC 1 cut(s) 506
BspCNI CTCAG 2 cut(s) 428, 837
BspLI GGNNCC 3 cut(s) 254, 782, 901
BspPI GGATC 2 cut(s) 539, 821
BspT107I GGYRCC 1 cut(s) 899
BsrDI GCAATG 1 cut(s) 906
BsrGI TGTACA 1 cut(s) 765
BsrI ACTGG 2 cut(s) 632, 927
BssECI CCNNGG 5 cut(s) 201, 248, 471, 492, 709
BssMI GATC 2 cut(s) 544, 813
BssT1I CCWWGG 3 cut(s) 471, 492, 709
Bst4CI ACNGT 3 cut(s) 61, 252, 340
Bst6I CTCTTC 1 cut(s) 981
BstAPI GCANNNNNTGC 1 cut(s) 431
BstAUI TGTACA 1 cut(s) 765
BstBAI YACGTR 1 cut(s) 847
BstDEI CTNAG 5 cut(s) 386, 415, 521, 824, 1015
BstDSI CCRYGG 1 cut(s) 248
BstF5I GGATG 4 cut(s) 188, 502, 640, 733
BstKTI GATC 2 cut(s) 547, 816
BstMBI GATC 2 cut(s) 544, 813
BstMWI GCNNNNNNNGC 3 cut(s) 431, 899, 908
BstNSI RCATGY 1 cut(s) 844
BstSFI CTRYAG 1 cut(s) 961
BstSLI GKGCMC 2 cut(s) 451, 674
BstSNI TACGTA 1 cut(s) 847
BstV1I GCAGC 6 cut(s) 128, 262, 273, 367, 454, 923
BstV2I GAAGAC 1 cut(s) 925
BstX2I RGATCY 1 cut(s) 813
BstXI CCANNNNNNTGG 2 cut(s) 237, 560
BstYI RGATCY 1 cut(s) 813
BsuRI GGCC 1 cut(s) 506
BtgI CCRYGG 1 cut(s) 248
BtsCI GGATG 4 cut(s) 188, 502, 640, 733
BtsIMutI CAGTG 1 cut(s) 336
CaiI CAGNNNCTG 2 cut(s) 431, 571
Cfr13I GGNCC 4 cut(s) 252, 459, 713, 957
Csp6I GTAC 4 cut(s) 574, 766, 821, 844
CspCI CAANNNNNGTGG 2 cut(s) 757, 792
CviAII CATG 3 cut(s) 841, 997, 1028
CviQI GTAC 4 cut(s) 574, 766, 821, 844
DdeI CTNAG 5 cut(s) 386, 415, 521, 824, 1015
DpnI GATC 2 cut(s) 546, 815
DpnII GATC 2 cut(s) 544, 813
Eam1104I CTCTTC 1 cut(s) 981
EarI CTCTTC 1 cut(s) 981
Ecl136II GAGCTC 1 cut(s) 396
Eco105I TACGTA 1 cut(s) 847
Eco130I CCWWGG 3 cut(s) 471, 492, 709
Eco24I GRGCYC 1 cut(s) 398
Eco47I GGWCC 4 cut(s) 252, 459, 713, 957
Eco53kI GAGCTC 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 819
EcoICRI GAGCTC 1 cut(s) 396
EcoRI GAATTC 1 cut(s) 1001
EcoT14I CCWWGG 3 cut(s) 471, 492, 709
EcoT22I ATGCAT 1 cut(s) 701
EcoT38I GRGCYC 1 cut(s) 398
ErhI CCWWGG 3 cut(s) 471, 492, 709
FaeI CATG 3 cut(s) 844, 1000, 1031
FaqI GGGAC 1 cut(s) 238
FatI CATG 3 cut(s) 840, 996, 1027
Fnu4HI GCNGC 6 cut(s) 142, 276, 287, 381, 468, 912
FokI GGATG 4 cut(s) 175, 509, 647, 740
FriOI GRGCYC 1 cut(s) 398
Fsp4HI GCNGC 6 cut(s) 142, 276, 287, 381, 468, 912
FspBI CTAG 5 cut(s) 54, 315, 456, 882, 890
GluI GCNGC 6 cut(s) 142, 276, 287, 381, 468, 912
GsuI CTGGAG 1 cut(s) 915
HaeIII GGCC 1 cut(s) 506
HapII CCGG 2 cut(s) 310, 915
Hin1II CATG 3 cut(s) 844, 1000, 1031
HindIII AAGCTT 1 cut(s) 758
HinfI GANTC 6 cut(s) 29, 131, 322, 413, 568, 658
HpaII CCGG 2 cut(s) 310, 915
Hpy166II GTNNAC 1 cut(s) 1033
Hpy188I TCNGA 3 cut(s) 84, 103, 1059
Hpy188III TCNNGA 5 cut(s) 54, 441, 662, 797, 944
Hpy8I GTNNAC 1 cut(s) 1033
HpyAV CCTTC 4 cut(s) 358, 496, 794, 1089
HpyCH4III ACNGT 3 cut(s) 61, 252, 340
HpyCH4IV ACGT 1 cut(s) 846
HpyCH4V TGCA 7 cut(s) 144, 289, 329, 336, 688, 699, 911
HpyF10VI GCNNNNNNNGC 3 cut(s) 431, 899, 908
HpyF3I CTNAG 5 cut(s) 386, 415, 521, 824, 1015
HpySE526I ACGT 1 cut(s) 846
Hsp92II CATG 3 cut(s) 844, 1000, 1031
Kzo9I GATC 2 cut(s) 544, 813
LmnI GCTCC 3 cut(s) 352, 606, 1021
Lsp1109I GCAGC 6 cut(s) 128, 262, 273, 367, 454, 923
LweI GCATC 3 cut(s) 109, 697, 718
MaeI CTAG 5 cut(s) 54, 315, 456, 882, 890
MaeII ACGT 1 cut(s) 846
MaeIII GTNAC 2 cut(s) 4, 305
MalI GATC 2 cut(s) 546, 815
MboI GATC 2 cut(s) 544, 813
MboII GAAGA 6 cut(s) 128, 613, 868, 871, 930, 998
MflI RGATCY 1 cut(s) 813
MhlI GDGCHC 3 cut(s) 398, 451, 674
MluCI AATT 4 cut(s) 23, 208, 991, 1001
MlyI GAGTC 2 cut(s) 38, 407
MmeI TCCRAC 1 cut(s) 619
MnlI CCTC 8 cut(s) 121, 196, 312, 529, 717, 890, 940, 1012
Mph1103I ATGCAT 1 cut(s) 701
MseI TTAA 5 cut(s) 420, 597, 702, 933, 1047
MslI CAYNNNNRTG 1 cut(s) 558
MspI CCGG 2 cut(s) 310, 915
MwoI GCNNNNNNNGC 3 cut(s) 431, 899, 908
NdeII GATC 2 cut(s) 544, 813
NlaIII CATG 3 cut(s) 844, 1000, 1031
NlaIV GGNNCC 3 cut(s) 254, 782, 901
NmuCI GTSAC 1 cut(s) 4
NsiI ATGCAT 1 cut(s) 701
NspI RCATGY 1 cut(s) 844
PciI ACATGT 1 cut(s) 840
PfeI GAWTC 4 cut(s) 131, 322, 568, 658
PkrI GCNGC 6 cut(s) 143, 277, 288, 382, 469, 913
PleI GAGTC 2 cut(s) 37, 407
PpsI GAGTC 2 cut(s) 37, 407
Ppu21I YACGTR 1 cut(s) 847
PscI ACATGT 1 cut(s) 840
PsiI TTATAA 1 cut(s) 300
Psp124BI GAGCTC 1 cut(s) 398
PspN4I GGNNCC 3 cut(s) 254, 782, 901
PspPI GGNCC 4 cut(s) 252, 459, 713, 957
PstNI CAGNNNCTG 2 cut(s) 431, 571
PsuI RGATCY 1 cut(s) 813
RsaI GTAC 4 cut(s) 575, 767, 822, 845
RsaNI GTAC 4 cut(s) 574, 766, 821, 844
RseI CAYNNNNRTG 1 cut(s) 558
SacI GAGCTC 1 cut(s) 398
SaqAI TTAA 5 cut(s) 420, 597, 702, 933, 1047
SatI GCNGC 6 cut(s) 142, 276, 287, 381, 468, 912
Sau3AI GATC 2 cut(s) 544, 813
Sau96I GGNCC 4 cut(s) 252, 459, 713, 957
SchI GAGTC 2 cut(s) 38, 407
SduI GDGCHC 3 cut(s) 398, 451, 674
SfaNI GCATC 3 cut(s) 109, 697, 718
SfcI CTRYAG 1 cut(s) 961
SinI GGWCC 4 cut(s) 252, 459, 713, 957
SmiMI CAYNNNNRTG 1 cut(s) 558
SmlI CTYRAG 2 cut(s) 533, 944
SmoI CTYRAG 2 cut(s) 533, 944
SnaBI TACGTA 1 cut(s) 847
Sse9I AATT 4 cut(s) 23, 208, 991, 1001
SsiI CCGC 1 cut(s) 966
SspMI CTAG 5 cut(s) 54, 315, 456, 882, 890
SstI GAGCTC 1 cut(s) 398
StyI CCWWGG 3 cut(s) 471, 492, 709
TaaI ACNGT 3 cut(s) 61, 252, 340
TaiI ACGT 1 cut(s) 849
TaqI TCGA 1 cut(s) 663
TasI AATT 4 cut(s) 23, 208, 991, 1001
TatI WGTACW 3 cut(s) 573, 765, 820
TfiI GAWTC 4 cut(s) 131, 322, 568, 658
Tru1I TTAA 5 cut(s) 420, 597, 702, 933, 1047
Tru9I TTAA 5 cut(s) 420, 597, 702, 933, 1047
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 6 cut(s) 141, 275, 286, 380, 467, 911
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 8 cut(s) 129, 177, 285, 750, 985, 994, 1016, 1071
TspRI CASTG 1 cut(s) 343
VpaK11BI GGWCC 4 cut(s) 252, 459, 713, 957
XapI RAATTY 3 cut(s) 23, 991, 1001
XbaI TCTAGA 1 cut(s) 53
XceI RCATGY 1 cut(s) 844
XspI CTAG 5 cut(s) 54, 315, 456, 882, 890
Zsp2I ATGCAT 1 cut(s) 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.