Rh6DG029600

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000760
Physical Location & Seq
Forward (+)
2658264 .. 2659190
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG029600.1

Sequence Viewer

Length: 216 bp
ATGTATAAGCAAAGTGGGATGCTTGTGAATAGTAGTGAAGGTTCCAAATCGATATTCGTGCTAAGCACAACAAGGGCTTTGTATGTTGGTCAGAAGAAGGGTCAGTTTGACCATTTGAGTTTTCTATCTGGAGGTGCTACCACAGCAGCTGGAAGATTGGTTGCCCATGATGGGGTTCTTGAGGCCATTTGGCCATACAGTGATCATTACGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.64

Weight (kDa)

8.09

Isoelectric Point (pI)

30.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 191
AfiI CCNNNNNNNGG 2 cut(s) 171, 172
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
AlwNI CAGNNNCTG 1 cut(s) 149
AoxI GGCC 2 cut(s) 183, 191
ApeKI GCWGC 1 cut(s) 146
BalI TGGCCA 1 cut(s) 193
BbvI GCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 164
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BclI TGATCA 1 cut(s) 202
BisI GCNGC 1 cut(s) 147
BlpI GCTNAGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 43
BmsI GCATC 1 cut(s) 9
BpmI CTGGAG 1 cut(s) 150
Bpu1102I GCTNAGC 1 cut(s) 62
BpuEI CTTGAG 1 cut(s) 200
Bsa29I ATCGAT 1 cut(s) 50
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 172
BseCI ATCGAT 1 cut(s) 50
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 2 cut(s) 171, 172
BseXI GCAGC 1 cut(s) 158
BshFI GGCC 2 cut(s) 185, 193
BshVI ATCGAT 1 cut(s) 50
BslI CCNNNNNNNGG 2 cut(s) 171, 172
BsnI GGCC 2 cut(s) 185, 193
Bsp143I GATC 1 cut(s) 202
Bsp1720I GCTNAGC 1 cut(s) 62
BspANI GGCC 2 cut(s) 185, 193
BspDI ATCGAT 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 43
BssMI GATC 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 62
BstF5I GGATG 1 cut(s) 24
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 158
Bsu15I ATCGAT 1 cut(s) 50
BsuRI GGCC 2 cut(s) 185, 193
BsuTUI ATCGAT 1 cut(s) 50
BtsCI GGATG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 205
CaiI CAGNNNCTG 1 cut(s) 149
ClaI ATCGAT 1 cut(s) 50
CviAII CATG 1 cut(s) 167
CviJI RGCY 4 cut(s) 77, 149, 185, 193
CviKI_1 RGCY 4 cut(s) 77, 149, 185, 193
DdeI CTNAG 1 cut(s) 62
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
EaeI YGGCCR 1 cut(s) 191
FaeI CATG 1 cut(s) 170
FaiI YATR 4 cut(s) 6, 84, 168, 196
FatI CATG 1 cut(s) 166
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 147
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 2 cut(s) 185, 193
Hin1II CATG 1 cut(s) 170
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 2 cut(s) 129, 179
HpyAV CCTTC 2 cut(s) 32, 91
HpyCH4III ACNGT 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 62
Hsp92II CATG 1 cut(s) 170
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 2 cut(s) 114, 135
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 1 cut(s) 9
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 2 cut(s) 106, 165
MlsI TGGCCA 1 cut(s) 193
MluNI TGGCCA 1 cut(s) 193
MnlI CCTC 2 cut(s) 125, 175
Mox20I TGGCCA 1 cut(s) 193
MscI TGGCCA 1 cut(s) 193
Msp20I TGGCCA 1 cut(s) 193
MspA1I CMGCKG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 143
NdeII GATC 1 cut(s) 202
NlaIII CATG 1 cut(s) 170
NlaIV GGNNCC 1 cut(s) 43
PkrI GCNGC 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 43
PsrI GAACNNNNNNTAC 2 cut(s) 25, 57
PstNI CAGNNNCTG 1 cut(s) 149
PvuII CAGCTG 1 cut(s) 149
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 1 cut(s) 202
SetI ASST 3 cut(s) 43, 136, 151
SfaNI GCATC 1 cut(s) 9
SgeI CNNG 7 cut(s) 35, 70, 84, 141, 162, 179, 191
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 200
TaqI TCGA 1 cut(s) 50
TscAI CASTG 1 cut(s) 205
TseI GCWGC 1 cut(s) 146
TspRI CASTG 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.