Short calmodulin-binding motif containing conserved Ile and Gln residues.
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1342 |
| AccI | GTMKAC | 2 cut(s) | 72, 1445 |
| AccIII | TCCGGA | 1 cut(s) | 1055 |
| AciI | CCGC | 4 cut(s) | 594, 1353, 1600, 1658 |
| AclWI | GGATC | 2 cut(s) | 701, 1591 |
| AcsI | RAATTY | 1 cut(s) | 1163 |
| AcuI | CTGAAG | 5 cut(s) | 64, 236, 981, 1275, 1386 |
| AfaI | GTAC | 2 cut(s) | 743, 869 |
| AfeI | AGCGCT | 1 cut(s) | 1427 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 101, 156, 603, 639, 1098, 1099, 1127, 1467, 1538 |
| AflIII | ACRYGT | 1 cut(s) | 738 |
| AgeI | ACCGGT | 1 cut(s) | 370 |
| AgsI | TTSAA | 7 cut(s) | 133, 310, 686, 698, 761, 1242, 1285 |
| AjnI | CCWGG | 3 cut(s) | 32, 155, 1561 |
| Alw21I | GWGCWC | 1 cut(s) | 1510 |
| Alw26I | GTCTC | 4 cut(s) | 169, 477, 551, 1473 |
| AlwI | GGATC | 2 cut(s) | 701, 1591 |
| Ama87I | CYCGRG | 2 cut(s) | 824, 835 |
| Aor13HI | TCCGGA | 1 cut(s) | 1055 |
| Aor51HI | AGCGCT | 1 cut(s) | 1427 |
| AoxI | GGCC | 5 cut(s) | 30, 1118, 1564, 1583, 1627 |
| ApeKI | GCWGC | 6 cut(s) | 107, 392, 629, 771, 1073, 1655 |
| ApoI | RAATTY | 1 cut(s) | 1163 |
| AsiGI | ACCGGT | 1 cut(s) | 370 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1280 |
| AspLEI | GCGC | 2 cut(s) | 509, 1428 |
| AspS9I | GGNCC | 6 cut(s) | 159, 875, 1565, 1584, 1627, 1644 |
| AsuHPI | GGTGA | 1 cut(s) | 1599 |
| AsuII | TTCGAA | 1 cut(s) | 968 |
| AvaI | CYCGRG | 2 cut(s) | 824, 835 |
| AvaII | GGWCC | 3 cut(s) | 159, 875, 1644 |
| BaeGI | GKGCMC | 1 cut(s) | 1345 |
| BanI | GGYRCC | 1 cut(s) | 1342 |
| BauI | CACGAG | 1 cut(s) | 1533 |
| Bbv12I | GWGCWC | 1 cut(s) | 1510 |
| BbvCI | CCTCAGC | 1 cut(s) | 465 |
| BbvI | GCAGC | 6 cut(s) | 94, 404, 616, 783, 1085, 1642 |
| BccI | CCATC | 6 cut(s) | 723, 800, 908, 1091, 1295, 1379 |
| BceAI | ACGGC | 3 cut(s) | 581, 1086, 1340 |
| BciT130I | CCWGG | 3 cut(s) | 34, 157, 1563 |
| BclI | TGATCA | 1 cut(s) | 87 |
| BcoDI | GTCTC | 4 cut(s) | 169, 477, 551, 1473 |
| BfaI | CTAG | 4 cut(s) | 366, 618, 624, 1488 |
| BfmI | CTRYAG | 2 cut(s) | 540, 848 |
| BfoI | RGCGCY | 2 cut(s) | 510, 1429 |
| BisI | GCNGC | 7 cut(s) | 108, 393, 630, 772, 1074, 1656, 1659 |
| BlpI | GCTNAGC | 1 cut(s) | 986 |
| BlsI | GCNGC | 7 cut(s) | 109, 394, 631, 773, 1075, 1657, 1660 |
| Bme1390I | CCNGG | 3 cut(s) | 34, 157, 1563 |
| Bme18I | GGWCC | 3 cut(s) | 159, 875, 1644 |
| BmeT110I | CYCGRG | 2 cut(s) | 824, 835 |
| BmgT120I | GGNCC | 6 cut(s) | 159, 875, 1565, 1584, 1627, 1644 |
| BmiI | GGNNCC | 5 cut(s) | 254, 944, 1344, 1459, 1646 |
| BmrFI | CCNGG | 3 cut(s) | 34, 157, 1563 |
| BmsI | GCATC | 2 cut(s) | 379, 870 |
| BpmI | CTGGAG | 1 cut(s) | 483 |
| Bpu10I | CCTNAGC | 1 cut(s) | 465 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 986 |
| Bpu14I | TTCGAA | 1 cut(s) | 968 |
| BpuEI | CTTGAG | 2 cut(s) | 533, 1127 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1233 |
| BsaI | GGTCTC | 1 cut(s) | 551 |
| BsaJI | CCNNGG | 8 cut(s) | 633, 836, 871, 1068, 1561, 1580, 1610, 1640 |
| BsaWI | WCCGGW | 2 cut(s) | 370, 1055 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 461, 491 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 101, 156, 603, 639, 1098, 1099, 1127, 1467, 1538 |
| Bse118I | RCCGGY | 2 cut(s) | 325, 370 |
| Bse1I | ACTGG | 4 cut(s) | 794, 1044, 1453, 1515 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1233 |
| BseAI | TCCGGA | 1 cut(s) | 1055 |
| BseBI | CCWGG | 3 cut(s) | 34, 157, 1563 |
| BseDI | CCNNGG | 8 cut(s) | 633, 836, 871, 1068, 1561, 1580, 1610, 1640 |
| BseGI | GGATG | 3 cut(s) | 664, 802, 1306 |
| BseJI | GATNNNNATC | 1 cut(s) | 1233 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 101, 156, 603, 639, 1098, 1099, 1127, 1467, 1538 |
| BseMII | CTCAG | 3 cut(s) | 107, 456, 1326 |
| BseNI | ACTGG | 4 cut(s) | 794, 1044, 1453, 1515 |
| BseRI | GAGGAG | 2 cut(s) | 482, 1521 |
| BseSI | GKGCMC | 1 cut(s) | 1345 |
| BseXI | GCAGC | 6 cut(s) | 94, 404, 616, 783, 1085, 1642 |
| BseYI | CCCAGC | 1 cut(s) | 1586 |
| BsgI | GTGCAG | 1 cut(s) | 474 |
| BshFI | GGCC | 5 cut(s) | 32, 1120, 1566, 1585, 1629 |
| BshNI | GGYRCC | 1 cut(s) | 1342 |
| BshTI | ACCGGT | 1 cut(s) | 370 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1510 |
| BsiHKCI | CYCGRG | 2 cut(s) | 824, 835 |
| BsiSI | CCGG | 3 cut(s) | 326, 371, 1056 |
| BslFI | GGGAC | 2 cut(s) | 78, 292 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 101, 156, 603, 639, 1098, 1099, 1127, 1467, 1538 |
| BsmAI | GTCTC | 4 cut(s) | 169, 477, 551, 1473 |
| BsmBI | CGTCTC | 1 cut(s) | 169 |
| BsmFI | GGGAC | 2 cut(s) | 78, 292 |
| BsmI | GAATGC | 1 cut(s) | 1039 |
| BsnI | GGCC | 5 cut(s) | 32, 1120, 1566, 1585, 1629 |
| Bso31I | GGTCTC | 1 cut(s) | 551 |
| BsoBI | CYCGRG | 2 cut(s) | 824, 835 |
| Bsp119I | TTCGAA | 1 cut(s) | 968 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1345, 1510 |
| Bsp13I | TCCGGA | 1 cut(s) | 1055 |
| Bsp143I | GATC | 5 cut(s) | 87, 119, 706, 1195, 1596 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 986 |
| BspACI | CCGC | 4 cut(s) | 594, 1353, 1600, 1658 |
| BspANI | GGCC | 5 cut(s) | 32, 1120, 1566, 1585, 1629 |
| BspCNI | CTCAG | 3 cut(s) | 108, 457, 1327 |
| BspEI | TCCGGA | 1 cut(s) | 1055 |
| BspLI | GGNNCC | 5 cut(s) | 254, 944, 1344, 1459, 1646 |
| BspPI | GGATC | 2 cut(s) | 701, 1591 |
| BspQI | GCTCTTC | 1 cut(s) | 687 |
| BspT104I | TTCGAA | 1 cut(s) | 968 |
| BspT107I | GGYRCC | 1 cut(s) | 1342 |
| BspTNI | GGTCTC | 1 cut(s) | 551 |
| BsrFI | RCCGGY | 2 cut(s) | 325, 370 |
| BsrI | ACTGG | 4 cut(s) | 794, 1044, 1453, 1515 |
| BssAI | RCCGGY | 2 cut(s) | 325, 370 |
| BssECI | CCNNGG | 8 cut(s) | 633, 836, 871, 1068, 1561, 1580, 1610, 1640 |
| BssMI | GATC | 5 cut(s) | 87, 119, 706, 1195, 1596 |
| BssSI | CACGAG | 1 cut(s) | 1533 |
| BssT1I | CCWWGG | 3 cut(s) | 633, 871, 1640 |
| Bst2BI | CACGAG | 1 cut(s) | 1533 |
| Bst2UI | CCWGG | 3 cut(s) | 34, 157, 1563 |
| Bst4CI | ACNGT | 3 cut(s) | 163, 844, 1127 |
| Bst6I | CTCTTC | 2 cut(s) | 687, 1143 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 452 |
| BstBI | TTCGAA | 1 cut(s) | 968 |
| BstC8I | GCNNGC | 9 cut(s) | 227, 327, 505, 776, 1424, 1430, 1475, 1617, 1631 |
| BstDEI | CTNAG | 6 cut(s) | 116, 264, 465, 654, 986, 1335 |
| BstDSI | CCRYGG | 1 cut(s) | 1068 |
| BstF5I | GGATG | 3 cut(s) | 664, 802, 1306 |
| BstH2I | RGCGCY | 2 cut(s) | 510, 1429 |
| BstHHI | GCGC | 2 cut(s) | 509, 1428 |
| BstKTI | GATC | 5 cut(s) | 90, 122, 709, 1198, 1599 |
| BstMAI | GTCTC | 4 cut(s) | 169, 477, 551, 1473 |
| BstMBI | GATC | 5 cut(s) | 87, 119, 706, 1195, 1596 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 452, 461, 1070, 1434 |
| BstNI | CCWGG | 3 cut(s) | 34, 157, 1563 |
| BstNSI | RCATGY | 1 cut(s) | 742 |
| BstSCI | CCNGG | 3 cut(s) | 32, 155, 1561 |
| BstSFI | CTRYAG | 2 cut(s) | 540, 848 |
| BstSLI | GKGCMC | 1 cut(s) | 1345 |
| BstV1I | GCAGC | 6 cut(s) | 94, 404, 616, 783, 1085, 1642 |
| BstX2I | RGATCY | 1 cut(s) | 1596 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 722, 1510 |
| BstYI | RGATCY | 1 cut(s) | 1596 |
| BsuRI | GGCC | 5 cut(s) | 32, 1120, 1566, 1585, 1629 |
| BtgI | CCRYGG | 1 cut(s) | 1068 |
| BtsCI | GGATG | 3 cut(s) | 664, 802, 1306 |
| BtsI | GCAGTG | 2 cut(s) | 462, 1399 |
| BtsIMutI | CAGTG | 6 cut(s) | 462, 957, 1132, 1200, 1399, 1508 |
| Cac8I | GCNNGC | 9 cut(s) | 227, 327, 505, 776, 1424, 1430, 1475, 1617, 1631 |
| CfoI | GCGC | 2 cut(s) | 509, 1428 |
| Cfr10I | RCCGGY | 2 cut(s) | 325, 370 |
| Cfr13I | GGNCC | 6 cut(s) | 159, 875, 1565, 1584, 1627, 1644 |
| Csp6I | GTAC | 2 cut(s) | 742, 868 |
| CspAI | ACCGGT | 1 cut(s) | 370 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 172, 207 |
| CviAII | CATG | 4 cut(s) | 739, 1094, 1159, 1544 |
| CviQI | GTAC | 2 cut(s) | 742, 868 |
| DdeI | CTNAG | 6 cut(s) | 116, 264, 465, 654, 986, 1335 |
| DpnI | GATC | 5 cut(s) | 89, 121, 708, 1197, 1598 |
| DpnII | GATC | 5 cut(s) | 87, 119, 706, 1195, 1596 |
| Eam1104I | CTCTTC | 2 cut(s) | 687, 1143 |
| EarI | CTCTTC | 2 cut(s) | 687, 1143 |
| EciI | GGCGGA | 1 cut(s) | 1589 |
| Eco130I | CCWWGG | 3 cut(s) | 633, 871, 1640 |
| Eco31I | GGTCTC | 1 cut(s) | 551 |
| Eco47I | GGWCC | 3 cut(s) | 159, 875, 1644 |
| Eco47III | AGCGCT | 1 cut(s) | 1427 |
| Eco57I | CTGAAG | 5 cut(s) | 64, 236, 981, 1275, 1386 |
| Eco88I | CYCGRG | 2 cut(s) | 824, 835 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1644 |
| EcoRI | GAATTC | 1 cut(s) | 1163 |
| EcoRII | CCWGG | 3 cut(s) | 32, 155, 1561 |
| EcoT14I | CCWWGG | 3 cut(s) | 633, 871, 1640 |
| EcoT22I | ATGCAT | 1 cut(s) | 863 |
| ErhI | CCWWGG | 3 cut(s) | 633, 871, 1640 |
| Esp3I | CGTCTC | 1 cut(s) | 169 |
| FaeI | CATG | 4 cut(s) | 742, 1097, 1162, 1547 |
| FaqI | GGGAC | 2 cut(s) | 78, 292 |
| FatI | CATG | 4 cut(s) | 738, 1093, 1158, 1543 |
| FauI | CCCGC | 1 cut(s) | 1360 |
| FbaI | TGATCA | 1 cut(s) | 87 |
| FblI | GTMKAC | 2 cut(s) | 72, 1445 |
| Fnu4HI | GCNGC | 7 cut(s) | 108, 393, 630, 772, 1074, 1656, 1659 |
| FokI | GGATG | 3 cut(s) | 671, 809, 1313 |
| Fsp4HI | GCNGC | 7 cut(s) | 108, 393, 630, 772, 1074, 1656, 1659 |
| FspBI | CTAG | 4 cut(s) | 366, 618, 624, 1488 |
| GlaI | GCGC | 2 cut(s) | 508, 1427 |
| GluI | GCNGC | 7 cut(s) | 108, 393, 630, 772, 1074, 1656, 1659 |
| GsaI | CCCAGC | 1 cut(s) | 1590 |
| GsuI | CTGGAG | 1 cut(s) | 483 |
| HaeII | RGCGCY | 2 cut(s) | 510, 1429 |
| HaeIII | GGCC | 5 cut(s) | 32, 1120, 1566, 1585, 1629 |
| HapII | CCGG | 3 cut(s) | 326, 371, 1056 |
| HhaI | GCGC | 2 cut(s) | 509, 1428 |
| Hin1II | CATG | 4 cut(s) | 742, 1097, 1162, 1547 |
| Hin6I | GCGC | 2 cut(s) | 507, 1426 |
| HinP1I | GCGC | 2 cut(s) | 507, 1426 |
| HincII | GTYRAC | 3 cut(s) | 199, 1290, 1522 |
| HindII | GTYRAC | 3 cut(s) | 199, 1290, 1522 |
| HinfI | GANTC | 5 cut(s) | 173, 208, 494, 536, 1464 |
| HpaI | GTTAAC | 1 cut(s) | 199 |
| HpaII | CCGG | 3 cut(s) | 326, 371, 1056 |
| HphI | GGTGA | 1 cut(s) | 1599 |
| Hpy166II | GTNNAC | 8 cut(s) | 73, 199, 415, 1290, 1413, 1446, 1522, 1558 |
| Hpy188I | TCNGA | 7 cut(s) | 145, 169, 408, 1017, 1300, 1366, 1581 |
| Hpy188III | TCNNGA | 7 cut(s) | 133, 377, 824, 826, 1056, 1106, 1210 |
| Hpy8I | GTNNAC | 8 cut(s) | 73, 199, 415, 1290, 1413, 1446, 1522, 1558 |
| Hpy99I | CGWCG | 1 cut(s) | 1552 |
| HpyAV | CCTTC | 8 cut(s) | 211, 403, 956, 1018, 1248, 1250, 1372, 1584 |
| HpyCH4III | ACNGT | 3 cut(s) | 163, 844, 1127 |
| HpyCH4IV | ACGT | 1 cut(s) | 1550 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 452, 461, 1070, 1434 |
| HpyF3I | CTNAG | 6 cut(s) | 116, 264, 465, 654, 986, 1335 |
| HpySE526I | ACGT | 1 cut(s) | 1550 |
| Hsp92II | CATG | 4 cut(s) | 742, 1097, 1162, 1547 |
| HspAI | GCGC | 2 cut(s) | 507, 1426 |
| Kpn2I | TCCGGA | 1 cut(s) | 1055 |
| KroI | GCCGGC | 1 cut(s) | 325 |
| KroNI | GCCGGC | 1 cut(s) | 327 |
| Ksp22I | TGATCA | 1 cut(s) | 87 |
| KspAI | GTTAAC | 1 cut(s) | 199 |
| Kzo9I | GATC | 5 cut(s) | 87, 119, 706, 1195, 1596 |
| LguI | GCTCTTC | 1 cut(s) | 687 |
| LmnI | GCTCC | 4 cut(s) | 104, 379, 469, 1457 |
| Lsp1109I | GCAGC | 6 cut(s) | 94, 404, 616, 783, 1085, 1642 |
| LweI | GCATC | 2 cut(s) | 379, 870 |
| MaeI | CTAG | 4 cut(s) | 366, 618, 624, 1488 |
| MaeII | ACGT | 1 cut(s) | 1550 |
| MaeIII | GTNAC | 1 cut(s) | 1490 |
| MalI | GATC | 5 cut(s) | 89, 121, 708, 1197, 1598 |
| MboI | GATC | 5 cut(s) | 87, 119, 706, 1195, 1596 |
| MboII | GAAGA | 9 cut(s) | 52, 447, 674, 775, 1030, 1033, 1092, 1160, 1258 |
| MfeI | CAATTG | 3 cut(s) | 1221, 1438, 1650 |
| MflI | RGATCY | 1 cut(s) | 1596 |
| MhlI | GDGCHC | 2 cut(s) | 1345, 1510 |
| MluCI | AATT | 8 cut(s) | 202, 242, 730, 1163, 1221, 1438, 1569, 1650 |
| MlyI | GAGTC | 2 cut(s) | 182, 217 |
| MmeI | TCCRAC | 1 cut(s) | 781 |
| Mph1103I | ATGCAT | 1 cut(s) | 863 |
| MroI | TCCGGA | 1 cut(s) | 1055 |
| MroNI | GCCGGC | 1 cut(s) | 325 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1280 |
| MseI | TTAA | 2 cut(s) | 198, 930 |
| MslI | CAYNNNNRTG | 1 cut(s) | 720 |
| MspA1I | CMGCKG | 2 cut(s) | 503, 1076 |
| MspI | CCGG | 3 cut(s) | 326, 371, 1056 |
| MspR9I | CCNGG | 3 cut(s) | 34, 157, 1563 |
| MunI | CAATTG | 3 cut(s) | 1221, 1438, 1650 |
| Mva1269I | GAATGC | 1 cut(s) | 1039 |
| MvaI | CCWGG | 3 cut(s) | 34, 157, 1563 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 452, 461, 1070, 1434 |
| NaeI | GCCGGC | 1 cut(s) | 327 |
| NdeII | GATC | 5 cut(s) | 87, 119, 706, 1195, 1596 |
| NgoMIV | GCCGGC | 1 cut(s) | 325 |
| NlaIII | CATG | 4 cut(s) | 742, 1097, 1162, 1547 |
| NlaIV | GGNNCC | 5 cut(s) | 254, 944, 1344, 1459, 1646 |
| NmuCI | GTSAC | 1 cut(s) | 1490 |
| NsiI | ATGCAT | 1 cut(s) | 863 |
| NspI | RCATGY | 1 cut(s) | 742 |
| NspV | TTCGAA | 1 cut(s) | 968 |
| PaeR7I | CTCGAG | 1 cut(s) | 824 |
| PciI | ACATGT | 1 cut(s) | 738 |
| PciSI | GCTCTTC | 1 cut(s) | 687 |
| PctI | GAATGC | 1 cut(s) | 1039 |
| PdiI | GCCGGC | 1 cut(s) | 327 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1280 |
| PfeI | GAWTC | 3 cut(s) | 494, 536, 1464 |
| PinAI | ACCGGT | 1 cut(s) | 370 |
| PkrI | GCNGC | 7 cut(s) | 109, 394, 631, 773, 1075, 1657, 1660 |
| PleI | GAGTC | 2 cut(s) | 181, 216 |
| PpsI | GAGTC | 2 cut(s) | 181, 216 |
| PpuMI | RGGWCCY | 1 cut(s) | 1644 |
| PscI | ACATGT | 1 cut(s) | 738 |
| Psp5II | RGGWCCY | 1 cut(s) | 1644 |
| Psp6I | CCWGG | 3 cut(s) | 32, 155, 1561 |
| PspFI | CCCAGC | 1 cut(s) | 1586 |
| PspGI | CCWGG | 3 cut(s) | 32, 155, 1561 |
| PspN4I | GGNNCC | 5 cut(s) | 254, 944, 1344, 1459, 1646 |
| PspPI | GGNCC | 6 cut(s) | 159, 875, 1565, 1584, 1627, 1644 |
| PspPPI | RGGWCCY | 1 cut(s) | 1644 |
| PsuI | RGATCY | 1 cut(s) | 1596 |
| PvuII | CAGCTG | 2 cut(s) | 503, 1076 |
| RsaI | GTAC | 2 cut(s) | 743, 869 |
| RsaNI | GTAC | 2 cut(s) | 742, 868 |
| RseI | CAYNNNNRTG | 1 cut(s) | 720 |
| SapI | GCTCTTC | 1 cut(s) | 687 |
| SaqAI | TTAA | 2 cut(s) | 198, 930 |
| SatI | GCNGC | 7 cut(s) | 108, 393, 630, 772, 1074, 1656, 1659 |
| Sau3AI | GATC | 5 cut(s) | 87, 119, 706, 1195, 1596 |
| Sau96I | GGNCC | 6 cut(s) | 159, 875, 1565, 1584, 1627, 1644 |
| SchI | GAGTC | 2 cut(s) | 182, 217 |
| ScrFI | CCNGG | 3 cut(s) | 34, 157, 1563 |
| SduI | GDGCHC | 2 cut(s) | 1345, 1510 |
| SfaNI | GCATC | 2 cut(s) | 379, 870 |
| SfcI | CTRYAG | 2 cut(s) | 540, 848 |
| Sfr274I | CTCGAG | 1 cut(s) | 824 |
| SfuI | TTCGAA | 1 cut(s) | 968 |
| SinI | GGWCC | 3 cut(s) | 159, 875, 1644 |
| SlaI | CTCGAG | 1 cut(s) | 824 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 720 |
| SmlI | CTYRAG | 3 cut(s) | 548, 824, 1106 |
| SmoI | CTYRAG | 3 cut(s) | 548, 824, 1106 |
| Sse9I | AATT | 8 cut(s) | 202, 242, 730, 1163, 1221, 1438, 1569, 1650 |
| SsiI | CCGC | 4 cut(s) | 594, 1353, 1600, 1658 |
| SspI | AATATT | 2 cut(s) | 927, 978 |
| SspMI | CTAG | 4 cut(s) | 366, 618, 624, 1488 |
| StyD4I | CCNGG | 3 cut(s) | 32, 155, 1561 |
| StyI | CCWWGG | 3 cut(s) | 633, 871, 1640 |
| TaaI | ACNGT | 3 cut(s) | 163, 844, 1127 |
| TaiI | ACGT | 1 cut(s) | 1553 |
| TaqI | TCGA | 8 cut(s) | 63, 206, 427, 433, 573, 825, 968, 1323 |
| TaqII | GACCGA | 1 cut(s) | 892 |
| TasI | AATT | 8 cut(s) | 202, 242, 730, 1163, 1221, 1438, 1569, 1650 |
| TatI | WGTACW | 1 cut(s) | 741 |
| TauI | GCSGC | 1 cut(s) | 1661 |
| TfiI | GAWTC | 3 cut(s) | 494, 536, 1464 |
| Tru1I | TTAA | 2 cut(s) | 198, 930 |
| Tru9I | TTAA | 2 cut(s) | 198, 930 |
| TscAI | CASTG | 6 cut(s) | 462, 964, 1132, 1207, 1399, 1515 |
| TseFI | GTSAC | 1 cut(s) | 1490 |
| TseI | GCWGC | 6 cut(s) | 107, 392, 629, 771, 1073, 1655 |
| Tsp45I | GTSAC | 1 cut(s) | 1490 |
| TspDTI | ATGAA | 4 cut(s) | 912, 1147, 1156, 1259 |
| TspGWI | ACGGA | 1 cut(s) | 1349 |
| TspRI | CASTG | 6 cut(s) | 462, 964, 1132, 1207, 1399, 1515 |
| VpaK11BI | GGWCC | 3 cut(s) | 159, 875, 1644 |
| XapI | RAATTY | 1 cut(s) | 1163 |
| XceI | RCATGY | 1 cut(s) | 742 |
| XhoI | CTCGAG | 1 cut(s) | 824 |
| XmiI | GTMKAC | 2 cut(s) | 72, 1445 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1280 |
| XspI | CTAG | 4 cut(s) | 366, 618, 624, 1488 |
| Zsp2I | ATGCAT | 1 cut(s) | 863 |