Rorug02G0039100

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000760
Physical Location & Seq
Reverse (-)
3032861 .. 3036855
3995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0039100.1

Sequence Viewer

Length: 1002 bp
ATGGTAGGCGACTGGATGAAGTTAGGCCTTGTGTACTGTGAATCTGGTAATTTGCCTATGTTGCATGGATCATCACTTTTTTCTTGTGGAGACACGCAGGTACTCTGTACTGTAACAGTTGGGGCACCTGGTAATGCACAACGCTTGGAATCCGTGGTGGGCCCCCCATCAAAGCCCTTCATGCTTCACTACAGTTTTTCCCCATTCTGTATAAATGAGGTCGGTAGACATGATGGCTTGAACAGGCGTGAAGTTGGTCATGGAACTCTGGCGGAAAAAGCTCTGCTTGCTGTGTTACCTCCTGAAGATGATTTTCCATACACTGTTCATGTCAATTCTGAAGTAATGGCTTCTGATGGTTCAACATCTATGGCTTCTGTCTGTGGAGGCAGTATGACTTTGATGGATGCTGGCATTCCACTGCACAAACATGTAGCTGGTGTCTCCGTAGGTCTTGTTAGTGAAGTTGATCAATCAACTGGCACAATAAAGGAATACCGTATATTGACTGACATTCTGGGTCTGGAAGATCATTCGGGGGACATGGACTTCAAAATTGTTGGCATGCAAGATGGAATCACCGCAATCACTATCTTGAAGTACAGCAATGATGCACTTCGTCGCTTGCTTGGGCCTCTGGGTGCTCTTAAAAGAAAAATTGAAGACGAAACAGGTACACGGATCTCTGTAAGTGATGGAACACTCACCATAGTTGCTAAGAATCAATCTCCAATGGACAAAGTACACGAAAAGGTTGATTTTGTACTTGGGCGTGACATTGAAATTGGTGGGATCTATAAAGGGACTGTAGCTTCAATCAAAGAGTATGGTGCATTCGTGGAGTTTAATGGTGGGCAACAAGGCCTTCTACACATTTCTGAGTTGTCACATGAACCGGTGTCACGGATTTCAGATGTAGTATCTGTTGGCCAGCAGCTCTCTTTGATGTGCATAGGCCAGGATGTTCGTGGTAACATTAAGTTGTCCCTGAAAGCCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

333

Amino Acids

35.63

Weight (kDa)

5.44

Isoelectric Point (pI)

32.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 12 - 140 2.6e-24 3' exoribonuclease family, domain 1
S1 PF00575 261 - 331 3.3e-12 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 88
AccB1I GGYRCC 1 cut(s) 124
AccI GTMKAC 1 cut(s) 226
AciI CCGC 2 cut(s) 272, 582
AclWI GGATC 3 cut(s) 76, 689, 800
AcoI YGGCCR 1 cut(s) 928
AcuI CTGAAG 2 cut(s) 324, 360
AfaI GTAC 7 cut(s) 35, 102, 109, 602, 676, 744, 765
AflIII ACRYGT 1 cut(s) 430
AgeI ACCGGT 1 cut(s) 895
AgsI TTSAA 7 cut(s) 241, 363, 553, 598, 662, 782, 816
AjnI CCWGG 2 cut(s) 127, 957
AluBI AGCT 4 cut(s) 281, 437, 812, 937
AluI AGCT 4 cut(s) 281, 437, 812, 937
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 2 cut(s) 84, 448
AlwI GGATC 3 cut(s) 76, 689, 800
AoxI GGCC 6 cut(s) 25, 160, 632, 862, 928, 955
ApaI GGGCCC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 934
AsiGI ACCGGT 1 cut(s) 895
AspS9I GGNCC 3 cut(s) 160, 161, 632
AsuHPI GGTGA 2 cut(s) 571, 697
BaeGI GKGCMC 2 cut(s) 127, 164
BalI TGGCCA 1 cut(s) 930
BanI GGYRCC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 669
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 1 cut(s) 946
BccI CCATC 6 cut(s) 175, 227, 350, 397, 566, 689
BciT130I CCWGG 2 cut(s) 129, 959
BclI TGATCA 1 cut(s) 469
BcoDI GTCTC 2 cut(s) 84, 448
BfmI CTRYAG 2 cut(s) 190, 807
BfuAI ACCTGC 1 cut(s) 88
BisI GCNGC 1 cut(s) 935
BlsI GCNGC 1 cut(s) 936
Bme1390I CCNGG 2 cut(s) 129, 959
BmgT120I GGNCC 3 cut(s) 160, 161, 632
BmiI GGNNCC 3 cut(s) 126, 162, 163
BmrFI CCNGG 2 cut(s) 129, 959
BmsI GCATC 2 cut(s) 397, 601
BpiI GAAGAC 1 cut(s) 669
BsaJI CCNNGG 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 895
Bse118I RCCGGY 1 cut(s) 895
Bse1I ACTGG 2 cut(s) 17, 484
Bse3DI GCAATG 1 cut(s) 613
BseBI CCWGG 2 cut(s) 129, 959
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 3 cut(s) 21, 412, 967
BseMI GCAATG 1 cut(s) 613
BseMII CTCAG 1 cut(s) 870
BseNI ACTGG 2 cut(s) 17, 484
BseSI GKGCMC 2 cut(s) 127, 164
BseXI GCAGC 1 cut(s) 946
BsgI GTGCAG 1 cut(s) 407
BshFI GGCC 6 cut(s) 27, 162, 634, 864, 930, 957
BshNI GGYRCC 1 cut(s) 124
BshTI ACCGGT 1 cut(s) 895
BsiHKAI GWGCWC 1 cut(s) 646
BsiSI CCGG 1 cut(s) 896
BslFI GGGAC 3 cut(s) 554, 817, 970
BsmAI GTCTC 2 cut(s) 84, 448
BsmFI GGGAC 3 cut(s) 554, 817, 970
BsmI GAATGC 2 cut(s) 414, 833
BsnI GGCC 6 cut(s) 27, 162, 634, 864, 930, 957
Bsp120I GGGCCC 1 cut(s) 160
Bsp1286I GDGCHC 3 cut(s) 127, 164, 646
Bsp143I GATC 5 cut(s) 68, 469, 529, 681, 792
BspACI CCGC 2 cut(s) 272, 582
BspANI GGCC 6 cut(s) 27, 162, 634, 864, 930, 957
BspCNI CTCAG 1 cut(s) 871
BspLI GGNNCC 3 cut(s) 126, 162, 163
BspMI ACCTGC 1 cut(s) 88
BspPI GGATC 3 cut(s) 76, 689, 800
BspT107I GGYRCC 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 613
BsrFI RCCGGY 1 cut(s) 895
BsrI ACTGG 2 cut(s) 17, 484
BssAI RCCGGY 1 cut(s) 895
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 5 cut(s) 68, 469, 529, 681, 792
Bst2UI CCWGG 2 cut(s) 129, 959
Bst4CI ACNGT 7 cut(s) 38, 112, 118, 194, 325, 500, 808
BstC8I GCNNGC 5 cut(s) 288, 412, 566, 626, 932
BstDEI CTNAG 2 cut(s) 717, 879
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 3 cut(s) 21, 412, 967
BstKTI GATC 5 cut(s) 71, 472, 532, 684, 795
BstMAI GTCTC 2 cut(s) 84, 448
BstMBI GATC 5 cut(s) 68, 469, 529, 681, 792
BstMWI GCNNNNNNNGC 4 cut(s) 61, 181, 278, 287
BstNI CCWGG 2 cut(s) 129, 959
BstNSI RCATGY 2 cut(s) 434, 568
BstSCI CCNGG 2 cut(s) 127, 957
BstSFI CTRYAG 2 cut(s) 190, 807
BstSLI GKGCMC 2 cut(s) 127, 164
BstV1I GCAGC 1 cut(s) 946
BstV2I GAAGAC 1 cut(s) 669
BstX2I RGATCY 2 cut(s) 681, 792
BstYI RGATCY 2 cut(s) 681, 792
BsuRI GGCC 6 cut(s) 27, 162, 634, 864, 930, 957
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 3 cut(s) 21, 412, 967
BtsI GCAGTG 1 cut(s) 419
BtsIMutI CAGTG 2 cut(s) 321, 419
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 5 cut(s) 288, 412, 566, 626, 932
Cfr10I RCCGGY 1 cut(s) 895
Cfr13I GGNCC 3 cut(s) 160, 161, 632
CsiI ACCWGGT 1 cut(s) 127
Csp6I GTAC 7 cut(s) 34, 101, 108, 601, 675, 743, 764
CspAI ACCGGT 1 cut(s) 895
CviAII CATG 9 cut(s) 65, 181, 230, 260, 329, 431, 544, 565, 890
CviQI GTAC 7 cut(s) 34, 101, 108, 601, 675, 743, 764
DdeI CTNAG 2 cut(s) 717, 879
DpnI GATC 5 cut(s) 70, 471, 531, 683, 794
DpnII GATC 5 cut(s) 68, 469, 529, 681, 792
EaeI YGGCCR 1 cut(s) 928
EciI GGCGGA 1 cut(s) 287
Eco147I AGGCCT 2 cut(s) 27, 864
Eco24I GRGCYC 1 cut(s) 164
Eco57I CTGAAG 2 cut(s) 324, 360
EcoO109I RGGNCCY 1 cut(s) 161
EcoRII CCWGG 2 cut(s) 127, 957
EcoT38I GRGCYC 1 cut(s) 164
FaeI CATG 9 cut(s) 68, 184, 233, 263, 332, 434, 547, 568, 893
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FaqI GGGAC 3 cut(s) 554, 817, 970
FatI CATG 9 cut(s) 64, 180, 229, 259, 328, 430, 543, 564, 889
FbaI TGATCA 1 cut(s) 469
FblI GTMKAC 1 cut(s) 226
Fnu4HI GCNGC 1 cut(s) 935
FokI GGATG 3 cut(s) 28, 419, 974
FriOI GRGCYC 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 935
GluI GCNGC 1 cut(s) 935
HaeIII GGCC 6 cut(s) 27, 162, 634, 864, 930, 957
HapII CCGG 1 cut(s) 896
Hin1II CATG 9 cut(s) 68, 184, 233, 263, 332, 434, 547, 568, 893
HinfI GANTC 4 cut(s) 41, 149, 576, 721
HpaII CCGG 1 cut(s) 896
HphI GGTGA 2 cut(s) 571, 697
Hpy166II GTNNAC 4 cut(s) 34, 227, 677, 745
Hpy188I TCNGA 4 cut(s) 340, 355, 880, 913
Hpy188III TCNNGA 3 cut(s) 302, 524, 595
Hpy8I GTNNAC 4 cut(s) 34, 227, 677, 745
Hpy99I CGWCG 1 cut(s) 624
HpyAV CCTTC 2 cut(s) 187, 875
HpyCH4III ACNGT 7 cut(s) 38, 112, 118, 194, 325, 500, 808
HpyCH4V TGCA 7 cut(s) 64, 137, 424, 568, 614, 833, 951
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 181, 278, 287
HpyF3I CTNAG 2 cut(s) 717, 879
Hsp92II CATG 9 cut(s) 68, 184, 233, 263, 332, 434, 547, 568, 893
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 5 cut(s) 68, 469, 529, 681, 792
Lsp1109I GCAGC 1 cut(s) 946
LweI GCATC 2 cut(s) 397, 601
MabI ACCWGGT 1 cut(s) 127
MaeIII GTNAC 6 cut(s) 112, 294, 773, 885, 900, 971
MalI GATC 5 cut(s) 70, 471, 531, 683, 794
MboI GATC 5 cut(s) 68, 469, 529, 681, 792
MboII GAAGA 3 cut(s) 317, 539, 674
MflI RGATCY 2 cut(s) 681, 792
MhlI GDGCHC 3 cut(s) 127, 164, 646
MlsI TGGCCA 1 cut(s) 930
MluCI AATT 5 cut(s) 49, 334, 555, 657, 783
MluNI TGGCCA 1 cut(s) 930
MnlI CCTC 4 cut(s) 211, 309, 380, 645
Mox20I TGGCCA 1 cut(s) 930
MscI TGGCCA 1 cut(s) 930
MseI TTAA 3 cut(s) 648, 846, 978
MslI CAYNNNNRTG 1 cut(s) 429
Msp20I TGGCCA 1 cut(s) 930
MspI CCGG 1 cut(s) 896
MspR9I CCNGG 2 cut(s) 129, 959
Mva1269I GAATGC 2 cut(s) 414, 833
MvaI CCWGG 2 cut(s) 129, 959
MwoI GCNNNNNNNGC 4 cut(s) 61, 181, 278, 287
NdeII GATC 5 cut(s) 68, 469, 529, 681, 792
NlaIII CATG 9 cut(s) 68, 184, 233, 263, 332, 434, 547, 568, 893
NlaIV GGNNCC 3 cut(s) 126, 162, 163
NmuCI GTSAC 3 cut(s) 773, 885, 900
NspI RCATGY 2 cut(s) 434, 568
PaeI GCATGC 1 cut(s) 568
PceI AGGCCT 2 cut(s) 27, 864
PciI ACATGT 1 cut(s) 430
PctI GAATGC 2 cut(s) 414, 833
PfeI GAWTC 4 cut(s) 41, 149, 576, 721
PinAI ACCGGT 1 cut(s) 895
PkrI GCNGC 1 cut(s) 936
PscI ACATGT 1 cut(s) 430
Psp6I CCWGG 2 cut(s) 127, 957
PspGI CCWGG 2 cut(s) 127, 957
PspN4I GGNNCC 3 cut(s) 126, 162, 163
PspOMI GGGCCC 1 cut(s) 160
PspPI GGNCC 3 cut(s) 160, 161, 632
PsuI RGATCY 2 cut(s) 681, 792
RsaI GTAC 7 cut(s) 35, 102, 109, 602, 676, 744, 765
RsaNI GTAC 7 cut(s) 34, 101, 108, 601, 675, 743, 764
RseI CAYNNNNRTG 1 cut(s) 429
SaqAI TTAA 3 cut(s) 648, 846, 978
SatI GCNGC 1 cut(s) 935
Sau3AI GATC 5 cut(s) 68, 469, 529, 681, 792
Sau96I GGNCC 3 cut(s) 160, 161, 632
ScrFI CCNGG 2 cut(s) 129, 959
SduI GDGCHC 3 cut(s) 127, 164, 646
SexAI ACCWGGT 1 cut(s) 127
SfaNI GCATC 2 cut(s) 397, 601
SfcI CTRYAG 2 cut(s) 190, 807
SmiMI CAYNNNNRTG 1 cut(s) 429
SphI GCATGC 1 cut(s) 568
Sse9I AATT 5 cut(s) 49, 334, 555, 657, 783
SseBI AGGCCT 2 cut(s) 27, 864
SsiI CCGC 2 cut(s) 272, 582
StuI AGGCCT 2 cut(s) 27, 864
StyD4I CCNGG 2 cut(s) 127, 957
TaaI ACNGT 7 cut(s) 38, 112, 118, 194, 325, 500, 808
TasI AATT 5 cut(s) 49, 334, 555, 657, 783
TatI WGTACW 5 cut(s) 33, 107, 600, 742, 763
TfiI GAWTC 4 cut(s) 41, 149, 576, 721
Tru1I TTAA 3 cut(s) 648, 846, 978
Tru9I TTAA 3 cut(s) 648, 846, 978
TscAI CASTG 2 cut(s) 328, 426
TseFI GTSAC 3 cut(s) 773, 885, 900
TseI GCWGC 1 cut(s) 934
Tsp45I GTSAC 3 cut(s) 773, 885, 900
TspDTI ATGAA 4 cut(s) 32, 169, 317, 906
TspGWI ACGGA 4 cut(s) 142, 436, 694, 919
TspRI CASTG 2 cut(s) 328, 426
XceI RCATGY 2 cut(s) 434, 568
XcmI CCANNNNNNNNNTGG 1 cut(s) 965
XmiI GTMKAC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.