Rh2DG464100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000760
Physical Location & Seq
Forward (+)
67201303 .. 67203458
2156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG464100.1

Sequence Viewer

Length: 1008 bp
ATGGTCACATTGACATCTATCAAATCTGAGTCCAAGCAAAATAAGACAACATCTAGAACAGTCAGCTTCAATAAAACTTATCTGAACAAAACAAGCAAATCTGATGGAATATATGAAGATGCTTTTGAGGAATCTACAAGCTGCAAGAAAAGGAAAATAGGAGAACTAACTCTTGGAACAAATGTTTCATCCTATAATACCGAGGGAAATTGCGTTGATAAGTTCAAGCCAGATTATTGGATTTCTCCACGGTCCCCAAGTGAGCTTGATGAAGCTGCCACCAAGCTGCATAAAGTTTATAAGAGTTACCGGACTAGGAGGAATCTTGCAGATTGCACTGTTATTGTAGGGGAGCTATGGTGGAAAGCATTAGACTTTGCTGCTCTTAGGCAGAGCTCTGTGTCATTTTTTGACTCAGTTAAAGCAGAAACTGCTGTTTCAAGATGGGCACGGGCTAGGACCAGAGCTGCCAAGGTTGGTAAAGGTCTGTCCAAGGATGAGAAGGCCCAGAAGTTAGCTCTAAGACATTGGCTTGAGGCTATTGATCCACGCCATCGTTATGGACAGAATCTGTACTTGTATTATGATGTGTGGTTTAATAGTGGGAGCTTTCAACCTTTCTTCTACTGGTTGGATGTTGGAGATGGCAAAGAAGTGAATCTCGACAAGTGCCCAAGAACTGAACTGCATCATCAATGCATTAAATACCTTGGACCAAAAGAGAGGGATGCTTATGAAGTGATTGTGGAAAGTGGGAAGCTTATGTACAAACAAAGTGGGAACCTTGTGAATACTCCTGAAGGTTCTAAATGGATCTTTGTACTCAGCACATCAAGGAACATGTACGTAGGGGAGAAGAAGAAACGCCTTTTCCAGCACTCTAGTTTTCTAGCTGGAGGTGCCACCATTGCAGCCGGAAGACTGGTTGCTCTTAATGGGATTCTTGAGAAATATCCGATAGATGATGATATTCCACCTTCATCTGCTACCAAGAAAGAAATAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ

Protein Analysis

335

Amino Acids

38.1

Weight (kDa)

9.37

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 899
AclWI GGATC 2 cut(s) 539, 821
AcuI CTGAAG 1 cut(s) 819
AfaI GTAC 4 cut(s) 575, 767, 822, 845
AflIII ACRYGT 1 cut(s) 840
AgsI TTSAA 4 cut(s) 70, 226, 441, 614
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
Alw21I GWGCWC 1 cut(s) 398
AlwI GGATC 2 cut(s) 539, 821
AlwNI CAGNNNCTG 2 cut(s) 431, 571
AoxI GGCC 1 cut(s) 504
ApeKI GCWGC 6 cut(s) 141, 275, 286, 380, 467, 911
AspS9I GGNCC 4 cut(s) 252, 459, 505, 713
AvaII GGWCC 3 cut(s) 252, 459, 713
BaeGI GKGCMC 2 cut(s) 451, 674
BanI GGYRCC 1 cut(s) 899
BanII GRGCYC 1 cut(s) 398
BarI GAAGNNNNNNTAC 2 cut(s) 749, 781
BbsI GAAGAC 1 cut(s) 925
Bbv12I GWGCWC 1 cut(s) 398
BbvI GCAGC 6 cut(s) 128, 262, 273, 367, 454, 923
BccI CCATC 4 cut(s) 98, 438, 561, 638
BfaI CTAG 5 cut(s) 54, 315, 456, 882, 890
BisI GCNGC 6 cut(s) 142, 276, 287, 381, 468, 912
BlsI GCNGC 6 cut(s) 143, 277, 288, 382, 469, 913
Bme18I GGWCC 3 cut(s) 252, 459, 713
BmgT120I GGNCC 4 cut(s) 252, 459, 505, 713
BmiI GGNNCC 3 cut(s) 254, 782, 901
BmsI GCATC 3 cut(s) 109, 697, 718
BpiI GAAGAC 1 cut(s) 925
BpmI CTGGAG 1 cut(s) 915
BpuEI CTTGAG 2 cut(s) 554, 965
BsaAI YACGTR 1 cut(s) 847
BsaJI CCNNGG 5 cut(s) 201, 248, 471, 492, 709
BsaWI WCCGGW 1 cut(s) 309
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bse1I ACTGG 2 cut(s) 632, 927
Bse3DI GCAATG 1 cut(s) 906
BseDI CCNNGG 5 cut(s) 201, 248, 471, 492, 709
BseGI GGATG 4 cut(s) 188, 502, 640, 733
BseMI GCAATG 1 cut(s) 906
BseMII CTCAG 3 cut(s) 18, 429, 838
BseNI ACTGG 2 cut(s) 632, 927
BseSI GKGCMC 2 cut(s) 451, 674
BseXI GCAGC 6 cut(s) 128, 262, 273, 367, 454, 923
BshFI GGCC 1 cut(s) 506
BshNI GGYRCC 1 cut(s) 899
BsiHKAI GWGCWC 1 cut(s) 398
BsiSI CCGG 2 cut(s) 310, 915
BslFI GGGAC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 1 cut(s) 506
Bsp1286I GDGCHC 3 cut(s) 398, 451, 674
Bsp1407I TGTACA 1 cut(s) 765
Bsp143I GATC 2 cut(s) 544, 813
BspANI GGCC 1 cut(s) 506
BspCNI CTCAG 3 cut(s) 19, 428, 837
BspLI GGNNCC 3 cut(s) 254, 782, 901
BspPI GGATC 2 cut(s) 539, 821
BspT107I GGYRCC 1 cut(s) 899
BsrDI GCAATG 1 cut(s) 906
BsrGI TGTACA 1 cut(s) 765
BsrI ACTGG 2 cut(s) 632, 927
BssECI CCNNGG 5 cut(s) 201, 248, 471, 492, 709
BssMI GATC 2 cut(s) 544, 813
BssT1I CCWWGG 3 cut(s) 471, 492, 709
Bst4CI ACNGT 3 cut(s) 61, 252, 340
BstAPI GCANNNNNTGC 1 cut(s) 431
BstAUI TGTACA 1 cut(s) 765
BstBAI YACGTR 1 cut(s) 847
BstDEI CTNAG 5 cut(s) 27, 386, 415, 521, 824
BstDSI CCRYGG 1 cut(s) 248
BstF5I GGATG 4 cut(s) 188, 502, 640, 733
BstKTI GATC 2 cut(s) 547, 816
BstMBI GATC 2 cut(s) 544, 813
BstMWI GCNNNNNNNGC 3 cut(s) 431, 899, 908
BstNSI RCATGY 1 cut(s) 844
BstSLI GKGCMC 2 cut(s) 451, 674
BstSNI TACGTA 1 cut(s) 847
BstV1I GCAGC 6 cut(s) 128, 262, 273, 367, 454, 923
BstV2I GAAGAC 1 cut(s) 925
BstX2I RGATCY 1 cut(s) 813
BstXI CCANNNNNNTGG 2 cut(s) 237, 560
BstYI RGATCY 1 cut(s) 813
BsuRI GGCC 1 cut(s) 506
BtgI CCRYGG 1 cut(s) 248
BtsCI GGATG 4 cut(s) 188, 502, 640, 733
BtsIMutI CAGTG 1 cut(s) 336
CaiI CAGNNNCTG 2 cut(s) 431, 571
Cfr13I GGNCC 4 cut(s) 252, 459, 505, 713
Csp6I GTAC 4 cut(s) 574, 766, 821, 844
CspCI CAANNNNNGTGG 2 cut(s) 757, 792
CviAII CATG 1 cut(s) 841
CviQI GTAC 4 cut(s) 574, 766, 821, 844
DdeI CTNAG 5 cut(s) 27, 386, 415, 521, 824
DpnI GATC 2 cut(s) 546, 815
DpnII GATC 2 cut(s) 544, 813
Ecl136II GAGCTC 1 cut(s) 396
Eco105I TACGTA 1 cut(s) 847
Eco130I CCWWGG 3 cut(s) 471, 492, 709
Eco24I GRGCYC 1 cut(s) 398
Eco47I GGWCC 3 cut(s) 252, 459, 713
Eco53kI GAGCTC 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 819
EcoICRI GAGCTC 1 cut(s) 396
EcoT14I CCWWGG 3 cut(s) 471, 492, 709
EcoT22I ATGCAT 1 cut(s) 701
EcoT38I GRGCYC 1 cut(s) 398
ErhI CCWWGG 3 cut(s) 471, 492, 709
FaeI CATG 1 cut(s) 844
FaqI GGGAC 1 cut(s) 238
FatI CATG 1 cut(s) 840
Fnu4HI GCNGC 6 cut(s) 142, 276, 287, 381, 468, 912
FokI GGATG 4 cut(s) 175, 509, 647, 740
FriOI GRGCYC 1 cut(s) 398
Fsp4HI GCNGC 6 cut(s) 142, 276, 287, 381, 468, 912
FspBI CTAG 5 cut(s) 54, 315, 456, 882, 890
GluI GCNGC 6 cut(s) 142, 276, 287, 381, 468, 912
GsuI CTGGAG 1 cut(s) 915
HaeIII GGCC 1 cut(s) 506
HapII CCGG 2 cut(s) 310, 915
Hin1II CATG 1 cut(s) 844
HindIII AAGCTT 1 cut(s) 758
HinfI GANTC 7 cut(s) 29, 131, 322, 413, 568, 658, 940
HpaII CCGG 2 cut(s) 310, 915
Hpy188I TCNGA 4 cut(s) 28, 84, 103, 957
Hpy188III TCNNGA 5 cut(s) 54, 441, 662, 797, 944
HpyAV CCTTC 3 cut(s) 496, 794, 987
HpyCH4III ACNGT 3 cut(s) 61, 252, 340
HpyCH4IV ACGT 1 cut(s) 846
HpyCH4V TGCA 7 cut(s) 144, 289, 329, 336, 688, 699, 911
HpyF10VI GCNNNNNNNGC 3 cut(s) 431, 899, 908
HpyF3I CTNAG 5 cut(s) 27, 386, 415, 521, 824
HpySE526I ACGT 1 cut(s) 846
Hsp92II CATG 1 cut(s) 844
Kzo9I GATC 2 cut(s) 544, 813
LmnI GCTCC 2 cut(s) 352, 606
Lsp1109I GCAGC 6 cut(s) 128, 262, 273, 367, 454, 923
LweI GCATC 3 cut(s) 109, 697, 718
MaeI CTAG 5 cut(s) 54, 315, 456, 882, 890
MaeII ACGT 1 cut(s) 846
MaeIII GTNAC 2 cut(s) 4, 305
MalI GATC 2 cut(s) 546, 815
MboI GATC 2 cut(s) 544, 813
MboII GAAGA 5 cut(s) 128, 613, 868, 871, 930
MflI RGATCY 1 cut(s) 813
MhlI GDGCHC 3 cut(s) 398, 451, 674
MluCI AATT 1 cut(s) 208
MlyI GAGTC 2 cut(s) 38, 407
MmeI TCCRAC 2 cut(s) 612, 619
MnlI CCTC 6 cut(s) 121, 196, 312, 529, 717, 890
Mph1103I ATGCAT 1 cut(s) 701
MseI TTAA 4 cut(s) 420, 597, 702, 933
MslI CAYNNNNRTG 1 cut(s) 558
MspI CCGG 2 cut(s) 310, 915
MwoI GCNNNNNNNGC 3 cut(s) 431, 899, 908
NdeII GATC 2 cut(s) 544, 813
NlaIII CATG 1 cut(s) 844
NlaIV GGNNCC 3 cut(s) 254, 782, 901
NmuCI GTSAC 1 cut(s) 4
NsiI ATGCAT 1 cut(s) 701
NspI RCATGY 1 cut(s) 844
PciI ACATGT 1 cut(s) 840
PfeI GAWTC 5 cut(s) 131, 322, 568, 658, 940
PkrI GCNGC 6 cut(s) 143, 277, 288, 382, 469, 913
PleI GAGTC 2 cut(s) 37, 407
PpsI GAGTC 2 cut(s) 37, 407
Ppu21I YACGTR 1 cut(s) 847
PscI ACATGT 1 cut(s) 840
PsiI TTATAA 1 cut(s) 300
Psp124BI GAGCTC 1 cut(s) 398
PspN4I GGNNCC 3 cut(s) 254, 782, 901
PspPI GGNCC 4 cut(s) 252, 459, 505, 713
PstNI CAGNNNCTG 2 cut(s) 431, 571
PsuI RGATCY 1 cut(s) 813
RsaI GTAC 4 cut(s) 575, 767, 822, 845
RsaNI GTAC 4 cut(s) 574, 766, 821, 844
RseI CAYNNNNRTG 1 cut(s) 558
SacI GAGCTC 1 cut(s) 398
SaqAI TTAA 4 cut(s) 420, 597, 702, 933
SatI GCNGC 6 cut(s) 142, 276, 287, 381, 468, 912
Sau3AI GATC 2 cut(s) 544, 813
Sau96I GGNCC 4 cut(s) 252, 459, 505, 713
SchI GAGTC 2 cut(s) 38, 407
SduI GDGCHC 3 cut(s) 398, 451, 674
SfaNI GCATC 3 cut(s) 109, 697, 718
SinI GGWCC 3 cut(s) 252, 459, 713
SmiMI CAYNNNNRTG 1 cut(s) 558
SmlI CTYRAG 2 cut(s) 533, 944
SmoI CTYRAG 2 cut(s) 533, 944
SnaBI TACGTA 1 cut(s) 847
Sse9I AATT 1 cut(s) 208
SspMI CTAG 5 cut(s) 54, 315, 456, 882, 890
SstI GAGCTC 1 cut(s) 398
StyI CCWWGG 3 cut(s) 471, 492, 709
TaaI ACNGT 3 cut(s) 61, 252, 340
TaiI ACGT 1 cut(s) 849
TaqI TCGA 1 cut(s) 663
TasI AATT 1 cut(s) 208
TatI WGTACW 3 cut(s) 573, 765, 820
TfiI GAWTC 5 cut(s) 131, 322, 568, 658, 940
Tru1I TTAA 4 cut(s) 420, 597, 702, 933
Tru9I TTAA 4 cut(s) 420, 597, 702, 933
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 6 cut(s) 141, 275, 286, 380, 467, 911
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 5 cut(s) 129, 177, 285, 750, 969
TspRI CASTG 1 cut(s) 343
VpaK11BI GGWCC 3 cut(s) 252, 459, 713
XbaI TCTAGA 1 cut(s) 53
XceI RCATGY 1 cut(s) 844
XspI CTAG 5 cut(s) 54, 315, 456, 882, 890
Zsp2I ATGCAT 1 cut(s) 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.