Rroxscaffold_2G00100860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000760
Physical Location & Seq
Reverse (-)
22752297 .. 22754445
2149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00100860.1

Sequence Viewer

Length: 933 bp
ATGGTCACATTGACATCTATCAAATTTGAGTCCAAGCAAAATAAGACAACATCTAGAACAGTCAGCTTCAATAAAACTTATCTGAACAAAACAAGCAAATCTGATGGAATACATGAAGATGCTTTTGAGGAATCTACAAGCTGCAAGAAAAGGAAAATAGGAGAGCTAACTCTTGGAACAAATGTTTCATCCTATAATACCGAGGGACATTGCGTTGATAAGTTCAAGCCAGATTATTGGATTTCTCCACGGTCCCCAAGTGAGCTTGATGAAGCTGCCACCAAGCTGCAGAAAGTTTATAAGAGTTACAGGACTAGGAGGAATCTTGCAGATTGCACTGTTATTGTAGGGGAGCTATGGTGGAAGGCATTAGACTTTGCTGCTCTTAGGCAGAGCTCTGTGTCATTTTTTGACTCAGTTAAAGCAGAAACTGCTGTTTCAAGATGGGCACGGGCTAGGACCAGAGCTGCCAAGGTTGGTAAAGGTCTGTCCAAGGATGAGAAGGCCCAGAAGTTAGCTTTAAGACATTGGCTTGAGGCTAAAGAGAGGGATGCTTATGAAGTGATTGTGGAAAGTGGGAAGCTTATGTACAAACAAAGTGGGAACCTTGTGAATACTCCTGAAGGTTCTAAATGGATCTTTGTACTCAGCACATCAAGGAACATGTACGTAGGGGAGAAGAAGAAAGGCCTTTTCCAGCACTCTAGTTTTCTAGCTGGAGGTGCCACCATTGCTGCCGGAAGACTGGTTGCTCTTAATGGGCTTCTTGAGGCTGTATGGTCCTATAGCGGTCATTATTGCCCAACAGAAGAGAATTTCATGGAATTCATTAGTTTCTTAGAGGAGCATCATGTGGACTTGACAGATGTTAAAAAATATCCGATAGATGATGATATTCCACCTTCATCTGCTACCAAGAAAGAAATAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ

Protein Analysis

310

Amino Acids

34.97

Weight (kDa)

9.1

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 722
AciI CCGC 1 cut(s) 789
AclWI GGATC 1 cut(s) 644
AcsI RAATTY 3 cut(s) 23, 814, 824
AcuI CTGAAG 1 cut(s) 642
AfaI GTAC 3 cut(s) 590, 645, 668
AflIII ACRYGT 1 cut(s) 663
AgsI TTSAA 3 cut(s) 70, 226, 441
Alw21I GWGCWC 1 cut(s) 398
AlwI GGATC 1 cut(s) 644
AlwNI CAGNNNCTG 1 cut(s) 431
AoxI GGCC 2 cut(s) 504, 688
ApeKI GCWGC 6 cut(s) 141, 275, 286, 380, 467, 734
ApoI RAATTY 3 cut(s) 23, 814, 824
AspS9I GGNCC 4 cut(s) 252, 459, 505, 780
AvaII GGWCC 3 cut(s) 252, 459, 780
BaeGI GKGCMC 1 cut(s) 451
BanI GGYRCC 1 cut(s) 722
BanII GRGCYC 1 cut(s) 398
BarI GAAGNNNNNNTAC 2 cut(s) 572, 604
BbsI GAAGAC 1 cut(s) 748
Bbv12I GWGCWC 1 cut(s) 398
BbvI GCAGC 6 cut(s) 128, 262, 273, 367, 454, 721
BccI CCATC 2 cut(s) 98, 438
BfaI CTAG 5 cut(s) 54, 315, 456, 705, 713
BfmI CTRYAG 2 cut(s) 287, 784
BisI GCNGC 6 cut(s) 142, 276, 287, 381, 468, 735
BlsI GCNGC 6 cut(s) 143, 277, 288, 382, 469, 736
Bme18I GGWCC 3 cut(s) 252, 459, 780
BmgT120I GGNCC 4 cut(s) 252, 459, 505, 780
BmiI GGNNCC 3 cut(s) 254, 605, 724
BmsI GCATC 3 cut(s) 109, 541, 856
BpiI GAAGAC 1 cut(s) 748
BpmI CTGGAG 1 cut(s) 738
BpuEI CTTGAG 2 cut(s) 554, 788
BsaAI YACGTR 1 cut(s) 670
BsaJI CCNNGG 4 cut(s) 201, 248, 471, 492
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bse1I ACTGG 1 cut(s) 750
Bse3DI GCAATG 2 cut(s) 208, 729
BseDI CCNNGG 4 cut(s) 201, 248, 471, 492
BseGI GGATG 3 cut(s) 188, 502, 556
BseMI GCAATG 2 cut(s) 208, 729
BseMII CTCAG 2 cut(s) 429, 661
BseNI ACTGG 1 cut(s) 750
BseRI GAGGAG 1 cut(s) 857
BseSI GKGCMC 1 cut(s) 451
BseXI GCAGC 6 cut(s) 128, 262, 273, 367, 454, 721
BshFI GGCC 2 cut(s) 506, 690
BshNI GGYRCC 1 cut(s) 722
BsiHKAI GWGCWC 1 cut(s) 398
BsiSI CCGG 1 cut(s) 738
BslFI GGGAC 2 cut(s) 219, 238
BsmFI GGGAC 2 cut(s) 219, 238
BsnI GGCC 2 cut(s) 506, 690
Bsp1286I GDGCHC 2 cut(s) 398, 451
Bsp1407I TGTACA 1 cut(s) 588
Bsp143I GATC 1 cut(s) 636
BspACI CCGC 1 cut(s) 789
BspANI GGCC 2 cut(s) 506, 690
BspCNI CTCAG 2 cut(s) 428, 660
BspLI GGNNCC 3 cut(s) 254, 605, 724
BspMAI CTGCAG 1 cut(s) 291
BspPI GGATC 1 cut(s) 644
BspT107I GGYRCC 1 cut(s) 722
BsrDI GCAATG 2 cut(s) 208, 729
BsrGI TGTACA 1 cut(s) 588
BsrI ACTGG 1 cut(s) 750
BssECI CCNNGG 4 cut(s) 201, 248, 471, 492
BssMI GATC 1 cut(s) 636
BssT1I CCWWGG 2 cut(s) 471, 492
Bst4CI ACNGT 3 cut(s) 61, 252, 340
Bst6I CTCTTC 1 cut(s) 804
BstAPI GCANNNNNTGC 1 cut(s) 431
BstAUI TGTACA 1 cut(s) 588
BstBAI YACGTR 1 cut(s) 670
BstDEI CTNAG 4 cut(s) 386, 415, 647, 838
BstDSI CCRYGG 1 cut(s) 248
BstF5I GGATG 3 cut(s) 188, 502, 556
BstKTI GATC 1 cut(s) 639
BstMBI GATC 1 cut(s) 636
BstMWI GCNNNNNNNGC 3 cut(s) 431, 722, 731
BstNSI RCATGY 1 cut(s) 667
BstSFI CTRYAG 2 cut(s) 287, 784
BstSLI GKGCMC 1 cut(s) 451
BstSNI TACGTA 1 cut(s) 670
BstV1I GCAGC 6 cut(s) 128, 262, 273, 367, 454, 721
BstV2I GAAGAC 1 cut(s) 748
BstX2I RGATCY 1 cut(s) 636
BstXI CCANNNNNNTGG 1 cut(s) 237
BstYI RGATCY 1 cut(s) 636
BsuRI GGCC 2 cut(s) 506, 690
BtgI CCRYGG 1 cut(s) 248
BtsCI GGATG 3 cut(s) 188, 502, 556
BtsIMutI CAGTG 1 cut(s) 336
CaiI CAGNNNCTG 1 cut(s) 431
Cfr13I GGNCC 4 cut(s) 252, 459, 505, 780
Csp6I GTAC 3 cut(s) 589, 644, 667
CspCI CAANNNNNGTGG 2 cut(s) 580, 615
CviAII CATG 4 cut(s) 113, 664, 820, 851
CviQI GTAC 3 cut(s) 589, 644, 667
DdeI CTNAG 4 cut(s) 386, 415, 647, 838
DpnI GATC 1 cut(s) 638
DpnII GATC 1 cut(s) 636
Eam1104I CTCTTC 1 cut(s) 804
EarI CTCTTC 1 cut(s) 804
Ecl136II GAGCTC 1 cut(s) 396
Eco105I TACGTA 1 cut(s) 670
Eco130I CCWWGG 2 cut(s) 471, 492
Eco147I AGGCCT 1 cut(s) 690
Eco24I GRGCYC 1 cut(s) 398
Eco47I GGWCC 3 cut(s) 252, 459, 780
Eco53kI GAGCTC 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 642
EcoICRI GAGCTC 1 cut(s) 396
EcoRI GAATTC 1 cut(s) 824
EcoT14I CCWWGG 2 cut(s) 471, 492
EcoT38I GRGCYC 1 cut(s) 398
ErhI CCWWGG 2 cut(s) 471, 492
FaeI CATG 4 cut(s) 116, 667, 823, 854
FaqI GGGAC 2 cut(s) 219, 238
FatI CATG 4 cut(s) 112, 663, 819, 850
Fnu4HI GCNGC 6 cut(s) 142, 276, 287, 381, 468, 735
FokI GGATG 3 cut(s) 175, 509, 563
FriOI GRGCYC 1 cut(s) 398
Fsp4HI GCNGC 6 cut(s) 142, 276, 287, 381, 468, 735
FspBI CTAG 5 cut(s) 54, 315, 456, 705, 713
GluI GCNGC 6 cut(s) 142, 276, 287, 381, 468, 735
GsuI CTGGAG 1 cut(s) 738
HaeIII GGCC 2 cut(s) 506, 690
HapII CCGG 1 cut(s) 738
Hin1II CATG 4 cut(s) 116, 667, 823, 854
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 4 cut(s) 29, 131, 322, 413
HpaII CCGG 1 cut(s) 738
Hpy166II GTNNAC 1 cut(s) 856
Hpy188I TCNGA 3 cut(s) 84, 103, 882
Hpy188III TCNNGA 4 cut(s) 54, 441, 620, 767
Hpy8I GTNNAC 1 cut(s) 856
HpyAV CCTTC 4 cut(s) 358, 496, 617, 912
HpyCH4III ACNGT 3 cut(s) 61, 252, 340
HpyCH4IV ACGT 1 cut(s) 669
HpyCH4V TGCA 4 cut(s) 144, 289, 329, 336
HpyF10VI GCNNNNNNNGC 3 cut(s) 431, 722, 731
HpyF3I CTNAG 4 cut(s) 386, 415, 647, 838
HpySE526I ACGT 1 cut(s) 669
Hsp92II CATG 4 cut(s) 116, 667, 823, 854
Kzo9I GATC 1 cut(s) 636
LmnI GCTCC 2 cut(s) 352, 844
LpnPI CCDG 9 cut(s) 243, 295, 475, 521, 633, 702, 710, 731, 751
Lsp1109I GCAGC 6 cut(s) 128, 262, 273, 367, 454, 721
LweI GCATC 3 cut(s) 109, 541, 856
MaeI CTAG 5 cut(s) 54, 315, 456, 705, 713
MaeII ACGT 1 cut(s) 669
MaeIII GTNAC 2 cut(s) 4, 305
MalI GATC 1 cut(s) 638
MboI GATC 1 cut(s) 636
MboII GAAGA 5 cut(s) 128, 691, 694, 753, 821
MflI RGATCY 1 cut(s) 636
MhlI GDGCHC 2 cut(s) 398, 451
MluCI AATT 3 cut(s) 23, 814, 824
MlyI GAGTC 2 cut(s) 38, 407
MnlI CCTC 8 cut(s) 121, 196, 312, 529, 540, 713, 763, 835
MseI TTAA 4 cut(s) 420, 521, 756, 870
MslI CAYNNNNRTG 1 cut(s) 117
MspI CCGG 1 cut(s) 738
MwoI GCNNNNNNNGC 3 cut(s) 431, 722, 731
NdeII GATC 1 cut(s) 636
NlaIII CATG 4 cut(s) 116, 667, 823, 854
NlaIV GGNNCC 3 cut(s) 254, 605, 724
NmuCI GTSAC 1 cut(s) 4
NspI RCATGY 1 cut(s) 667
PceI AGGCCT 1 cut(s) 690
PciI ACATGT 1 cut(s) 663
PfeI GAWTC 2 cut(s) 131, 322
PkrI GCNGC 6 cut(s) 143, 277, 288, 382, 469, 736
PleI GAGTC 2 cut(s) 37, 407
PpsI GAGTC 2 cut(s) 37, 407
Ppu21I YACGTR 1 cut(s) 670
PscI ACATGT 1 cut(s) 663
PsiI TTATAA 1 cut(s) 300
Psp124BI GAGCTC 1 cut(s) 398
PspN4I GGNNCC 3 cut(s) 254, 605, 724
PspPI GGNCC 4 cut(s) 252, 459, 505, 780
PstI CTGCAG 1 cut(s) 291
PstNI CAGNNNCTG 1 cut(s) 431
PsuI RGATCY 1 cut(s) 636
RsaI GTAC 3 cut(s) 590, 645, 668
RsaNI GTAC 3 cut(s) 589, 644, 667
RseI CAYNNNNRTG 1 cut(s) 117
SacI GAGCTC 1 cut(s) 398
SaqAI TTAA 4 cut(s) 420, 521, 756, 870
SatI GCNGC 6 cut(s) 142, 276, 287, 381, 468, 735
Sau3AI GATC 1 cut(s) 636
Sau96I GGNCC 4 cut(s) 252, 459, 505, 780
SchI GAGTC 2 cut(s) 38, 407
SduI GDGCHC 2 cut(s) 398, 451
SfaNI GCATC 3 cut(s) 109, 541, 856
SfcI CTRYAG 2 cut(s) 287, 784
SinI GGWCC 3 cut(s) 252, 459, 780
SmiMI CAYNNNNRTG 1 cut(s) 117
SmlI CTYRAG 2 cut(s) 533, 767
SmoI CTYRAG 2 cut(s) 533, 767
SnaBI TACGTA 1 cut(s) 670
Sse9I AATT 3 cut(s) 23, 814, 824
SseBI AGGCCT 1 cut(s) 690
SsiI CCGC 1 cut(s) 789
SspMI CTAG 5 cut(s) 54, 315, 456, 705, 713
SstI GAGCTC 1 cut(s) 398
StuI AGGCCT 1 cut(s) 690
StyI CCWWGG 2 cut(s) 471, 492
TaaI ACNGT 3 cut(s) 61, 252, 340
TaiI ACGT 1 cut(s) 672
TasI AATT 3 cut(s) 23, 814, 824
TatI WGTACW 2 cut(s) 588, 643
TfiI GAWTC 2 cut(s) 131, 322
Tru1I TTAA 4 cut(s) 420, 521, 756, 870
Tru9I TTAA 4 cut(s) 420, 521, 756, 870
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 6 cut(s) 141, 275, 286, 380, 467, 734
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 7 cut(s) 129, 177, 285, 573, 808, 817, 894
TspRI CASTG 1 cut(s) 343
VpaK11BI GGWCC 3 cut(s) 252, 459, 780
XapI RAATTY 3 cut(s) 23, 814, 824
XbaI TCTAGA 1 cut(s) 53
XceI RCATGY 1 cut(s) 667
XspI CTAG 5 cut(s) 54, 315, 456, 705, 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.