Rmu_sc0038782.1_g000001

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038782.1
OG0000760
Physical Location & Seq
Reverse (-)
1 .. 924
924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038782.1_g000001.1.cds

Sequence Viewer

Length: 543 bp
atggagataatgagattcactaccttgaatgtggattttcttatgatacaaacacatatttctgaggcacatgcattttgttctgacagaacttgtagaatggcgacaatgacatctatcagtttagtgtccaagagaacgaaggtgatgtcaagaacagttagttttgagaaccccgattcaagcaacaccaacagatcctatggcctagatacattggtttttgaaaaatctgtatgctacaagaaaaggaaagcaggacaactaaagctcgatacttcaactttgctacccaagctagaaggttgtgtttctccacagaccccacgcgagcttgatgaagctgcaatcaagctgcagaaattttacaagagttaccgaactagacgaaaccttgcagattgtgctgttgttgtcgaggagctatggtggaaggcattagactttgctgcacttaggcggagctctgtctcattctttgaatctgttgaatcagaaactgcagtttccagatgggcaagggctaagactagagctgccaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.7

Weight (kDa)

9.58

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 330
AciI CCGC 1 cut(s) 460
AclWI GGATC 1 cut(s) 192
AcsI RAATTY 1 cut(s) 362
AgsI TTSAA 6 cut(s) 28, 183, 227, 282, 482, 491
AluBI AGCT 8 cut(s) 271, 298, 334, 344, 355, 424, 465, 536
AluI AGCT 8 cut(s) 271, 298, 334, 344, 355, 424, 465, 536
Alw21I GWGCWC 1 cut(s) 467
Alw26I GTCTC 1 cut(s) 475
AlwI GGATC 1 cut(s) 192
AlwNI CAGNNNCTG 1 cut(s) 500
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 4 cut(s) 344, 355, 449, 536
ApoI RAATTY 1 cut(s) 362
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
AsuHPI GGTGA 1 cut(s) 157
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BanII GRGCYC 1 cut(s) 467
Bbv12I GWGCWC 1 cut(s) 467
BbvI GCAGC 4 cut(s) 331, 342, 436, 523
BccI CCATC 1 cut(s) 507
BcoDI GTCTC 1 cut(s) 475
BfaI CTAG 4 cut(s) 209, 299, 384, 531
BfmI CTRYAG 2 cut(s) 356, 501
BisI GCNGC 4 cut(s) 345, 356, 450, 537
BlsI GCNGC 4 cut(s) 346, 357, 451, 538
BsaXI ACNNNNNCTCC 2 cut(s) 413, 443
BseMII CTCAG 1 cut(s) 54
BseRI GAGGAG 1 cut(s) 434
BseXI GCAGC 4 cut(s) 331, 342, 436, 523
BsgI GTGCAG 1 cut(s) 435
Bsh1236I CGCG 1 cut(s) 330
BshFI GGCC 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 467
BsmAI GTCTC 1 cut(s) 475
BsnI GGCC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 467
Bsp143I GATC 1 cut(s) 197
BspACI CCGC 1 cut(s) 460
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 1 cut(s) 55
BspFNI CGCG 1 cut(s) 330
BspMAI CTGCAG 2 cut(s) 360, 505
BspPI GGATC 1 cut(s) 192
BssMI GATC 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 160
BstAPI GCANNNNNTGC 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 332
BstDEI CTNAG 3 cut(s) 63, 455, 525
BstFNI CGCG 1 cut(s) 330
BstKTI GATC 1 cut(s) 200
BstMAI GTCTC 1 cut(s) 475
BstMBI GATC 1 cut(s) 197
BstMWI GCNNNNNNNGC 2 cut(s) 295, 404
BstNSI RCATGY 1 cut(s) 74
BstSFI CTRYAG 2 cut(s) 356, 501
BstUI CGCG 1 cut(s) 330
BstV1I GCAGC 4 cut(s) 331, 342, 436, 523
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 332
CaiI CAGNNNCTG 1 cut(s) 500
CviAII CATG 1 cut(s) 71
DdeI CTNAG 3 cut(s) 63, 455, 525
DpnI GATC 1 cut(s) 199
DpnII GATC 1 cut(s) 197
EciI GGCGGA 1 cut(s) 475
Ecl136II GAGCTC 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 467
Eco53kI GAGCTC 1 cut(s) 465
EcoICRI GAGCTC 1 cut(s) 465
EcoT22I ATGCAT 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 467
FaeI CATG 1 cut(s) 74
FaiI YATR 6 cut(s) 44, 57, 72, 204, 238, 427
FatI CATG 1 cut(s) 70
Fnu4HI GCNGC 4 cut(s) 345, 356, 450, 537
FriOI GRGCYC 1 cut(s) 467
Fsp4HI GCNGC 4 cut(s) 345, 356, 450, 537
FspBI CTAG 4 cut(s) 209, 299, 384, 531
GluI GCNGC 4 cut(s) 345, 356, 450, 537
HaeIII GGCC 1 cut(s) 207
Hin1II CATG 1 cut(s) 74
HinfI GANTC 4 cut(s) 15, 179, 482, 491
HphI GGTGA 1 cut(s) 157
Hpy188I TCNGA 3 cut(s) 64, 85, 496
Hpy188III TCNNGA 2 cut(s) 153, 510
HpyAV CCTTC 3 cut(s) 136, 296, 427
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 6 cut(s) 74, 347, 358, 398, 452, 503
HpyF10VI GCNNNNNNNGC 2 cut(s) 295, 404
HpyF3I CTNAG 3 cut(s) 63, 455, 525
Hsp92II CATG 1 cut(s) 74
Kzo9I GATC 1 cut(s) 197
LmnI GCTCC 2 cut(s) 421, 462
LpnPI CCDG 2 cut(s) 243, 523
Lsp1109I GCAGC 4 cut(s) 331, 342, 436, 523
MaeI CTAG 4 cut(s) 209, 299, 384, 531
MaeIII GTNAC 1 cut(s) 374
MalI GATC 1 cut(s) 199
MboI GATC 1 cut(s) 197
MflI RGATCY 1 cut(s) 197
MhlI GDGCHC 1 cut(s) 467
MluCI AATT 1 cut(s) 362
MnlI CCTC 2 cut(s) 58, 412
Mph1103I ATGCAT 1 cut(s) 76
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 2 cut(s) 295, 404
NdeII GATC 1 cut(s) 197
NlaIII CATG 1 cut(s) 74
NsiI ATGCAT 1 cut(s) 76
NspI RCATGY 1 cut(s) 74
PfeI GAWTC 4 cut(s) 15, 179, 482, 491
PkrI GCNGC 4 cut(s) 346, 357, 451, 538
Psp124BI GAGCTC 1 cut(s) 467
PstI CTGCAG 2 cut(s) 360, 505
PstNI CAGNNNCTG 1 cut(s) 500
PsuI RGATCY 1 cut(s) 197
SacI GAGCTC 1 cut(s) 467
SatI GCNGC 4 cut(s) 345, 356, 450, 537
Sau3AI GATC 1 cut(s) 197
SduI GDGCHC 1 cut(s) 467
SfcI CTRYAG 2 cut(s) 356, 501
Sse9I AATT 1 cut(s) 362
SsiI CCGC 1 cut(s) 460
SspMI CTAG 4 cut(s) 209, 299, 384, 531
SstI GAGCTC 1 cut(s) 467
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 2 cut(s) 273, 417
TasI AATT 1 cut(s) 362
TfiI GAWTC 4 cut(s) 15, 179, 482, 491
TseI GCWGC 4 cut(s) 344, 355, 449, 536
TspDTI ATGAA 1 cut(s) 354
XapI RAATTY 1 cut(s) 362
XceI RCATGY 1 cut(s) 74
XspI CTAG 4 cut(s) 209, 299, 384, 531
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.