RchiOBHm_Chr2g0143721

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000760
Physical Location & Seq
Reverse (-)
61374816 .. 61377364
2549 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51380

Sequence Viewer

Length: 1596 bp
ATGAGTTTGTATCATGGAGAAACTATTAAGTCTATCTTAATGGAGATAATGAGATTCACTACCTTGAATGTGGATTTTCTTATGATACAAACACATATTTCTGAGGCACATGCATTTTGTTTTGACAGAACTTGTAGAATGGCGACAATGACATCTATCAGTTTAGTGTCCAAGAGAACGAAGGTGATGTCAAGAACAGTTAGTTTTGAGAACCCCGATTCAAGCAACACCAACAGATCCTATGGCCTAGATACATTGGTTTTTGAAAAATCTGTATGCTACAAGAAAAGGAAAGCAGGACAACTAAAGCTCGATACTTCAACTTTGCTACCCAAGCTAGAAGGTTGTGTTTCTCCACAGACCCCACGCGAGCTTGATGAAGCTGCAATCAAGCTGCAGAAATTTTACAAGAGTTACCGAACTAGACGAAACCTTGCAGATTGTGCTGTTGTTGTCGAGGAGCTATGGTGGAAGGCATTAGACTTTGCTGCACTTAGGCGGAGCTCTGTCTCATTCTTTGAATCTGTTGAATCAGAAACTGCAGTTTCCAGATGGGCAAGGGCTAAGACTAGAGCTGCCAAGGTTGGGAAGGGTTTGTCCAAGGATGAGAAGGCTCAGAAATTAGCTTTAAGACATTGGCTTGAGGCTATTGATCCACGGCATCGATATGGACATAATCTGCACTTGTATTATGATGTCTGGTTTAATAGTGCGAGCTCTCAACCTTTCTTCTACTGGTTGGATGTTGGAGATGGTAAAGAAGAAAATCTTGAGAAGTGTCCAAGAGCGGATCTTCAACGCCAATGCATCAAGTACCTTGGACCAAATGAGAGGGAAATATATGAAGTGATAGTGGCTAGTGGGAAGCTTGTATACAGACAAAGTGGCAACCTTGTGACTACTACTGAGGGTTCCAAATGGATCTTTGTTCTCAGTGCATCGAGGATTATGTATGTTGCGGAAAAGAAGAAAGGCTATTTCCAGCACTCCAGTTTTCTATCCGGAGGTGCCACAATTGCAGCGGGGAGATTAGTTGCTTCTGATGGGGTTCTTGAGGCTGTATGGTGCTACAGTGGTCATTATCGCCCGACAGAAGAGCACTTTTTGGAGTTCATTAGCTTCTTAGAGGAGCAACAGGTGGACTTGACAAATGTCAAAAAACATCCTATAGATGATGATATTCCACCTTCAGAATCTACCAGTAAAGATATGAGCACCCTTGAGGATATCCCATCGGCAAACATGGAGACGAGTACTAATGAAAATGAGCGTGCCGTTGACGCTTCCATAGTAAGTGATGACAATCAAGACATTGTGGAAGCACCAAAATTTGACTCGGGATCAGGGGGATTGCCTTGCAAATGGACTACAGGAGCTGGCCCTCGAATCGGATGTGTGAGAGACTACCCCGCACGGCTGCAATTTCAGGCACTTGAGCAAGTCAATCTGTCACCAAGAATCAAACCAGAACGCACTGCAAGCAATAACACCCCAGTTCCTTCACCAAGACCTAGTCCCAAGTTCCACTTATCACCTAGACTTGCATATATGGGACTTCCTAGCCCCAGAAGATTGCATAATTTGACTCCTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

531

Amino Acids

60.05

Weight (kDa)

8.62

Isoelectric Point (pI)

43.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1007
AccBSI CCGCTC 1 cut(s) 788
AccI GTMKAC 1 cut(s) 873
AccII CGCG 1 cut(s) 369
AccIII TCCGGA 1 cut(s) 1001
AciI CCGC 5 cut(s) 499, 788, 959, 1022, 1410
AclWI GGATC 5 cut(s) 231, 647, 798, 929, 1348
AcsI RAATTY 2 cut(s) 401, 1328
AcuI CTGAAG 1 cut(s) 1173
AfaI GTAC 2 cut(s) 815, 1255
AfiI CCNNNNNNNGG 2 cut(s) 585, 1388
AgsI TTSAA 7 cut(s) 67, 222, 266, 321, 521, 530, 797
Alw21I GWGCWC 4 cut(s) 506, 719, 1101, 1217
Alw26I GTCTC 3 cut(s) 514, 1241, 1395
AlwI GGATC 5 cut(s) 231, 647, 798, 929, 1348
AlwNI CAGNNNCTG 2 cut(s) 539, 1376
Ama87I CYCGRG 1 cut(s) 1336
Aor13HI TCCGGA 1 cut(s) 1001
AoxI GGCC 2 cut(s) 244, 1378
ApeKI GCWGC 6 cut(s) 383, 394, 488, 575, 1019, 1417
ApoI RAATTY 2 cut(s) 401, 1328
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
AspS9I GGNCC 2 cut(s) 821, 1379
AsuHPI GGTGA 4 cut(s) 196, 1443, 1494, 1524
AvaI CYCGRG 1 cut(s) 1336
AvaII GGWCC 1 cut(s) 821
BaeI ACNNNNGTAYC 2 cut(s) 243, 276
BanI GGYRCC 1 cut(s) 1007
BanII GRGCYC 2 cut(s) 506, 719
BarI GAAGNNNNNNTAC 2 cut(s) 857, 889
Bbv12I GWGCWC 4 cut(s) 506, 719, 1101, 1217
BbvI GCAGC 6 cut(s) 370, 381, 475, 562, 1031, 1404
BccI CCATC 4 cut(s) 546, 746, 1037, 1240
BceAI ACGGC 3 cut(s) 674, 1259, 1430
BcoDI GTCTC 3 cut(s) 514, 1241, 1395
BfaI CTAG 8 cut(s) 248, 338, 423, 570, 858, 1512, 1536, 1560
BfmI CTRYAG 5 cut(s) 395, 540, 1069, 1167, 1368
BisI GCNGC 6 cut(s) 384, 395, 489, 576, 1020, 1418
BlsI GCNGC 6 cut(s) 385, 396, 490, 577, 1021, 1419
BmcAI AGTACT 1 cut(s) 1255
Bme18I GGWCC 1 cut(s) 821
BmeT110I CYCGRG 1 cut(s) 1336
BmgT120I GGNCC 2 cut(s) 821, 1379
BmiI GGNNCC 2 cut(s) 913, 1009
BmrI ACTGGG 1 cut(s) 1487
BmsI GCATC 3 cut(s) 670, 816, 947
BmuI ACTGGG 1 cut(s) 1487
BoxI GACNNNNGTC 1 cut(s) 1151
BpmI CTGGAG 1 cut(s) 973
BpuEI CTTGAG 5 cut(s) 662, 791, 1073, 1241, 1454
Bsa29I ATCGAT 1 cut(s) 664
BsaBI GATNNNNATC 1 cut(s) 1302
BsaJI CCNNGG 4 cut(s) 579, 600, 656, 817
BsaWI WCCGGW 1 cut(s) 1001
BsaXI ACNNNNNCTCC 2 cut(s) 452, 482
Bsc4I CCNNNNNNNGG 2 cut(s) 585, 1388
Bse1I ACTGG 4 cut(s) 740, 990, 1200, 1493
Bse8I GATNNNNATC 1 cut(s) 1302
BseAI TCCGGA 1 cut(s) 1001
BseCI ATCGAT 1 cut(s) 664
BseDI CCNNGG 4 cut(s) 579, 600, 656, 817
BseGI GGATG 4 cut(s) 610, 748, 1162, 1397
BseJI GATNNNNATC 1 cut(s) 1302
BseLI CCNNNNNNNGG 2 cut(s) 585, 1388
BseMII CTCAG 4 cut(s) 93, 629, 897, 946
BseNI ACTGG 4 cut(s) 740, 990, 1200, 1493
BseRI GAGGAG 3 cut(s) 473, 1142, 1578
BseXI GCAGC 6 cut(s) 370, 381, 475, 562, 1031, 1404
BsgI GTGCAG 2 cut(s) 474, 665
Bsh1236I CGCG 1 cut(s) 369
BshFI GGCC 2 cut(s) 246, 1380
BshNI GGYRCC 1 cut(s) 1007
BshVI ATCGAT 1 cut(s) 664
BsiHKAI GWGCWC 4 cut(s) 506, 719, 1101, 1217
BsiHKCI CYCGRG 1 cut(s) 1336
BsiSI CCGG 1 cut(s) 1002
BslFI GGGAC 2 cut(s) 1500, 1566
BslI CCNNNNNNNGG 2 cut(s) 585, 1388
BsmAI GTCTC 3 cut(s) 514, 1241, 1395
BsmBI CGTCTC 1 cut(s) 1241
BsmFI GGGAC 2 cut(s) 1500, 1566
BsnI GGCC 2 cut(s) 246, 1380
BsoBI CYCGRG 1 cut(s) 1336
Bsp1286I GDGCHC 4 cut(s) 506, 719, 1101, 1217
Bsp13I TCCGGA 1 cut(s) 1001
Bsp143I GATC 5 cut(s) 236, 652, 790, 921, 1340
BspACI CCGC 5 cut(s) 499, 788, 959, 1022, 1410
BspANI GGCC 2 cut(s) 246, 1380
BspCNI CTCAG 4 cut(s) 94, 628, 898, 945
BspDI ATCGAT 1 cut(s) 664
BspEI TCCGGA 1 cut(s) 1001
BspFNI CGCG 1 cut(s) 369
BspLI GGNNCC 2 cut(s) 913, 1009
BspMAI CTGCAG 2 cut(s) 399, 544
BspPI GGATC 5 cut(s) 231, 647, 798, 929, 1348
BspQI GCTCTTC 1 cut(s) 1089
BspT107I GGYRCC 1 cut(s) 1007
BsrBI CCGCTC 1 cut(s) 788
BsrI ACTGG 4 cut(s) 740, 990, 1200, 1493
BssECI CCNNGG 4 cut(s) 579, 600, 656, 817
BssMI GATC 5 cut(s) 236, 652, 790, 921, 1340
BssNAI GTATAC 1 cut(s) 874
BssT1I CCWWGG 3 cut(s) 579, 600, 817
Bst1107I GTATAC 1 cut(s) 874
Bst4CI ACNGT 2 cut(s) 199, 1073
Bst6I CTCTTC 1 cut(s) 1089
BstAPI GCANNNNNTGC 1 cut(s) 443
BstC8I GCNNGC 5 cut(s) 371, 715, 1272, 1378, 1480
BstDEI CTNAG 8 cut(s) 102, 494, 564, 615, 906, 932, 1123, 1593
BstDSI CCRYGG 1 cut(s) 656
BstF5I GGATG 4 cut(s) 610, 748, 1162, 1397
BstFNI CGCG 1 cut(s) 369
BstKTI GATC 5 cut(s) 239, 655, 793, 924, 1343
BstMAI GTCTC 3 cut(s) 514, 1241, 1395
BstMBI GATC 5 cut(s) 236, 652, 790, 921, 1340
BstMWI GCNNNNNNNGC 5 cut(s) 334, 443, 1016, 1280, 1479
BstNSI RCATGY 1 cut(s) 113
BstPAI GACNNNNGTC 1 cut(s) 1151
BstSFI CTRYAG 5 cut(s) 395, 540, 1069, 1167, 1368
BstUI CGCG 1 cut(s) 369
BstV1I GCAGC 6 cut(s) 370, 381, 475, 562, 1031, 1404
BstX2I RGATCY 3 cut(s) 236, 790, 921
BstYI RGATCY 3 cut(s) 236, 790, 921
BstZ17I GTATAC 1 cut(s) 874
Bsu15I ATCGAT 1 cut(s) 664
BsuRI GGCC 2 cut(s) 246, 1380
BsuTUI ATCGAT 1 cut(s) 664
BtgI CCRYGG 1 cut(s) 656
BtsCI GGATG 4 cut(s) 610, 748, 1162, 1397
BtsI GCAGTG 1 cut(s) 1473
BtsIMutI CAGTG 3 cut(s) 940, 1078, 1473
Cac8I GCNNGC 5 cut(s) 371, 715, 1272, 1378, 1480
CaiI CAGNNNCTG 2 cut(s) 539, 1376
Cfr13I GGNCC 2 cut(s) 821, 1379
ClaI ATCGAT 1 cut(s) 664
CseI GACGC 1 cut(s) 1289
Csp6I GTAC 2 cut(s) 814, 1254
CviAII CATG 3 cut(s) 14, 110, 1243
CviQI GTAC 2 cut(s) 814, 1254
DdeI CTNAG 8 cut(s) 102, 494, 564, 615, 906, 932, 1123, 1593
DpnI GATC 5 cut(s) 238, 654, 792, 923, 1342
DpnII GATC 5 cut(s) 236, 652, 790, 921, 1340
Eam1104I CTCTTC 1 cut(s) 1089
EarI CTCTTC 1 cut(s) 1089
EciI GGCGGA 1 cut(s) 514
Ecl136II GAGCTC 2 cut(s) 504, 717
Eco130I CCWWGG 3 cut(s) 579, 600, 817
Eco24I GRGCYC 2 cut(s) 506, 719
Eco32I GATATC 1 cut(s) 1228
Eco47I GGWCC 1 cut(s) 821
Eco53kI GAGCTC 2 cut(s) 504, 717
Eco57I CTGAAG 1 cut(s) 1173
Eco88I CYCGRG 1 cut(s) 1336
EcoICRI GAGCTC 2 cut(s) 504, 717
EcoRV GATATC 1 cut(s) 1228
EcoT14I CCWWGG 3 cut(s) 579, 600, 817
EcoT22I ATGCAT 2 cut(s) 115, 809
EcoT38I GRGCYC 2 cut(s) 506, 719
ErhI CCWWGG 3 cut(s) 579, 600, 817
Esp3I CGTCTC 1 cut(s) 1241
FaeI CATG 3 cut(s) 17, 113, 1246
FalI AAGNNNNNCTT 6 cut(s) 20, 52, 753, 785, 1511, 1543
FaqI GGGAC 2 cut(s) 1500, 1566
FatI CATG 3 cut(s) 13, 109, 1242
FauI CCCGC 2 cut(s) 1015, 1417
FblI GTMKAC 1 cut(s) 873
Fnu4HI GCNGC 6 cut(s) 384, 395, 489, 576, 1020, 1418
FokI GGATG 4 cut(s) 617, 755, 1149, 1404
FriOI GRGCYC 2 cut(s) 506, 719
Fsp4HI GCNGC 6 cut(s) 384, 395, 489, 576, 1020, 1418
FspBI CTAG 8 cut(s) 248, 338, 423, 570, 858, 1512, 1536, 1560
GluI GCNGC 6 cut(s) 384, 395, 489, 576, 1020, 1418
GsuI CTGGAG 1 cut(s) 973
HaeIII GGCC 2 cut(s) 246, 1380
HapII CCGG 1 cut(s) 1002
HgaI GACGC 1 cut(s) 1289
Hin1II CATG 3 cut(s) 17, 113, 1246
HincII GTYRAC 1 cut(s) 1279
HindII GTYRAC 1 cut(s) 1279
HindIII AAGCTT 1 cut(s) 866
HinfI GANTC 9 cut(s) 54, 218, 521, 530, 1193, 1334, 1386, 1458, 1585
HpaII CCGG 1 cut(s) 1002
HphI GGTGA 4 cut(s) 196, 1443, 1494, 1524
Hpy166II GTNNAC 3 cut(s) 874, 1141, 1279
Hpy188I TCNGA 6 cut(s) 103, 535, 618, 1042, 1192, 1391
Hpy188III TCNNGA 7 cut(s) 192, 549, 770, 1002, 1052, 1307, 1338
Hpy8I GTNNAC 3 cut(s) 874, 1141, 1279
HpyAV CCTTC 7 cut(s) 175, 335, 466, 583, 604, 1197, 1509
HpyCH4III ACNGT 2 cut(s) 199, 1073
HpyF10VI GCNNNNNNNGC 5 cut(s) 334, 443, 1016, 1280, 1479
HpyF3I CTNAG 8 cut(s) 102, 494, 564, 615, 906, 932, 1123, 1593
Hsp92II CATG 3 cut(s) 17, 113, 1246
Kpn2I TCCGGA 1 cut(s) 1001
Kzo9I GATC 5 cut(s) 236, 652, 790, 921, 1340
LguI GCTCTTC 1 cut(s) 1089
LmnI GCTCC 4 cut(s) 460, 501, 1129, 1373
Lsp1109I GCAGC 6 cut(s) 370, 381, 475, 562, 1031, 1404
LweI GCATC 3 cut(s) 670, 816, 947
MaeI CTAG 8 cut(s) 248, 338, 423, 570, 858, 1512, 1536, 1560
MaeIII GTNAC 3 cut(s) 413, 895, 1449
MalI GATC 5 cut(s) 238, 654, 792, 923, 1342
MbiI CCGCTC 1 cut(s) 788
MboI GATC 5 cut(s) 236, 652, 790, 921, 1340
MboII GAAGA 6 cut(s) 721, 773, 785, 979, 1106, 1581
MfeI CAATTG 1 cut(s) 1014
MflI RGATCY 3 cut(s) 236, 790, 921
MhlI GDGCHC 4 cut(s) 506, 719, 1101, 1217
MluCI AATT 6 cut(s) 401, 620, 1014, 1328, 1421, 1579
MlyI GAGTC 2 cut(s) 1328, 1579
MmeI TCCRAC 2 cut(s) 720, 727
Mph1103I ATGCAT 2 cut(s) 115, 809
MroI TCCGGA 1 cut(s) 1001
MseI TTAA 4 cut(s) 27, 38, 629, 705
MslI CAYNNNNRTG 1 cut(s) 666
MspA1I CMGCKG 1 cut(s) 1022
MspI CCGG 1 cut(s) 1002
MunI CAATTG 1 cut(s) 1014
MvnI CGCG 1 cut(s) 369
MwoI GCNNNNNNNGC 5 cut(s) 334, 443, 1016, 1280, 1479
NdeII GATC 5 cut(s) 236, 652, 790, 921, 1340
NlaIII CATG 3 cut(s) 17, 113, 1246
NlaIV GGNNCC 2 cut(s) 913, 1009
NmuCI GTSAC 2 cut(s) 895, 1449
NsiI ATGCAT 2 cut(s) 115, 809
NspI RCATGY 1 cut(s) 113
PciSI GCTCTTC 1 cut(s) 1089
PfeI GAWTC 7 cut(s) 54, 218, 521, 530, 1193, 1386, 1458
PflFI GACNNNGTC 1 cut(s) 1512
PkrI GCNGC 6 cut(s) 385, 396, 490, 577, 1021, 1419
PleI GAGTC 2 cut(s) 1328, 1579
PpsI GAGTC 2 cut(s) 1328, 1579
PshAI GACNNNNGTC 1 cut(s) 1151
Psp124BI GAGCTC 2 cut(s) 506, 719
PspN4I GGNNCC 2 cut(s) 913, 1009
PspPI GGNCC 2 cut(s) 821, 1379
PstI CTGCAG 2 cut(s) 399, 544
PstNI CAGNNNCTG 2 cut(s) 539, 1376
PsuI RGATCY 3 cut(s) 236, 790, 921
PsyI GACNNNGTC 1 cut(s) 1512
RsaI GTAC 2 cut(s) 815, 1255
RsaNI GTAC 2 cut(s) 814, 1254
RseI CAYNNNNRTG 1 cut(s) 666
SacI GAGCTC 2 cut(s) 506, 719
SapI GCTCTTC 1 cut(s) 1089
SaqAI TTAA 4 cut(s) 27, 38, 629, 705
SatI GCNGC 6 cut(s) 384, 395, 489, 576, 1020, 1418
Sau3AI GATC 5 cut(s) 236, 652, 790, 921, 1340
Sau96I GGNCC 2 cut(s) 821, 1379
ScaI AGTACT 1 cut(s) 1255
SchI GAGTC 2 cut(s) 1328, 1579
SduI GDGCHC 4 cut(s) 506, 719, 1101, 1217
SfaNI GCATC 3 cut(s) 670, 816, 947
SfcI CTRYAG 5 cut(s) 395, 540, 1069, 1167, 1368
SinI GGWCC 1 cut(s) 821
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 5 cut(s) 641, 770, 1052, 1220, 1433
SmoI CTYRAG 5 cut(s) 641, 770, 1052, 1220, 1433
Sse9I AATT 6 cut(s) 401, 620, 1014, 1328, 1421, 1579
SsiI CCGC 5 cut(s) 499, 788, 959, 1022, 1410
SspMI CTAG 8 cut(s) 248, 338, 423, 570, 858, 1512, 1536, 1560
SstI GAGCTC 2 cut(s) 506, 719
StyI CCWWGG 3 cut(s) 579, 600, 817
TaaI ACNGT 2 cut(s) 199, 1073
TaqI TCGA 5 cut(s) 312, 456, 664, 941, 1384
TasI AATT 6 cut(s) 401, 620, 1014, 1328, 1421, 1579
TatI WGTACW 1 cut(s) 1253
TfiI GAWTC 7 cut(s) 54, 218, 521, 530, 1193, 1386, 1458
Tru1I TTAA 4 cut(s) 27, 38, 629, 705
Tru9I TTAA 4 cut(s) 27, 38, 629, 705
TscAI CASTG 3 cut(s) 940, 1078, 1480
TseFI GTSAC 2 cut(s) 895, 1449
TseI GCWGC 6 cut(s) 383, 394, 488, 575, 1019, 1417
Tsp45I GTSAC 2 cut(s) 895, 1449
TspDTI ATGAA 4 cut(s) 393, 858, 1102, 1275
TspRI CASTG 3 cut(s) 940, 1078, 1480
Tth111I GACNNNGTC 1 cut(s) 1512
VpaK11BI GGWCC 1 cut(s) 821
XapI RAATTY 2 cut(s) 401, 1328
XceI RCATGY 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 873
XspI CTAG 8 cut(s) 248, 338, 423, 570, 858, 1512, 1536, 1560
ZrmI AGTACT 1 cut(s) 1255
Zsp2I ATGCAT 2 cut(s) 115, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.