3'-UTR-mediated mRNA destabilization
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 180 |
| AciI | CCGC | 2 cut(s) | 103, 244 |
| AgsI | TTSAA | 1 cut(s) | 79 |
| AjnI | CCWGG | 1 cut(s) | 427 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 42, 74 |
| AluBI | AGCT | 2 cut(s) | 458, 464 |
| AluI | AGCT | 2 cut(s) | 458, 464 |
| AoxI | GGCC | 3 cut(s) | 337, 403, 484 |
| AspS9I | GGNCC | 1 cut(s) | 484 |
| AsuHPI | GGTGA | 1 cut(s) | 74 |
| BccI | CCATC | 1 cut(s) | 145 |
| BciT130I | CCWGG | 1 cut(s) | 429 |
| BclI | TGATCA | 1 cut(s) | 64 |
| BfmI | CTRYAG | 1 cut(s) | 453 |
| Bme1390I | CCNGG | 1 cut(s) | 429 |
| BmgT120I | GGNCC | 1 cut(s) | 484 |
| BmiI | GGNNCC | 1 cut(s) | 447 |
| BmrFI | CCNGG | 1 cut(s) | 429 |
| BpmI | CTGGAG | 1 cut(s) | 444 |
| BsaJI | CCNNGG | 2 cut(s) | 305, 427 |
| BsaWI | WCCGGW | 1 cut(s) | 499 |
| BseBI | CCWGG | 1 cut(s) | 429 |
| BseDI | CCNNGG | 2 cut(s) | 305, 427 |
| Bsh1236I | CGCG | 1 cut(s) | 180 |
| BshFI | GGCC | 3 cut(s) | 339, 405, 486 |
| BsiSI | CCGG | 1 cut(s) | 500 |
| BsnI | GGCC | 3 cut(s) | 339, 405, 486 |
| Bsp143I | GATC | 1 cut(s) | 64 |
| BspACI | CCGC | 2 cut(s) | 103, 244 |
| BspANI | GGCC | 3 cut(s) | 339, 405, 486 |
| BspFNI | CGCG | 1 cut(s) | 180 |
| BspLI | GGNNCC | 1 cut(s) | 447 |
| BssECI | CCNNGG | 2 cut(s) | 305, 427 |
| BssMI | GATC | 1 cut(s) | 64 |
| BssT1I | CCWWGG | 1 cut(s) | 305 |
| Bst2UI | CCWGG | 1 cut(s) | 429 |
| Bst6I | CTCTTC | 4 cut(s) | 6, 105, 177, 246 |
| BstC8I | GCNNGC | 1 cut(s) | 488 |
| BstDEI | CTNAG | 3 cut(s) | 87, 159, 228 |
| BstFNI | CGCG | 1 cut(s) | 180 |
| BstKTI | GATC | 1 cut(s) | 67 |
| BstMBI | GATC | 1 cut(s) | 64 |
| BstNI | CCWGG | 1 cut(s) | 429 |
| BstSCI | CCNGG | 1 cut(s) | 427 |
| BstSFI | CTRYAG | 1 cut(s) | 453 |
| BstUI | CGCG | 1 cut(s) | 180 |
| BsuRI | GGCC | 3 cut(s) | 339, 405, 486 |
| BtsI | GCAGTG | 1 cut(s) | 267 |
| BtsIMutI | CAGTG | 1 cut(s) | 267 |
| Cac8I | GCNNGC | 1 cut(s) | 488 |
| Cfr13I | GGNCC | 1 cut(s) | 484 |
| CviJI | RGCY | 6 cut(s) | 304, 339, 405, 458, 464, 486 |
| CviKI_1 | RGCY | 6 cut(s) | 304, 339, 405, 458, 464, 486 |
| DdeI | CTNAG | 3 cut(s) | 87, 159, 228 |
| DpnI | GATC | 1 cut(s) | 66 |
| DpnII | GATC | 1 cut(s) | 64 |
| Eam1104I | CTCTTC | 4 cut(s) | 6, 105, 177, 246 |
| EarI | CTCTTC | 4 cut(s) | 6, 105, 177, 246 |
| Eco130I | CCWWGG | 1 cut(s) | 305 |
| EcoRII | CCWGG | 1 cut(s) | 427 |
| EcoT14I | CCWWGG | 1 cut(s) | 305 |
| ErhI | CCWWGG | 1 cut(s) | 305 |
| FaiI | YATR | 1 cut(s) | 505 |
| FbaI | TGATCA | 1 cut(s) | 64 |
| GsuI | CTGGAG | 1 cut(s) | 444 |
| HaeIII | GGCC | 3 cut(s) | 339, 405, 486 |
| HapII | CCGG | 1 cut(s) | 500 |
| HincII | GTYRAC | 1 cut(s) | 18 |
| HindII | GTYRAC | 1 cut(s) | 18 |
| HpaII | CCGG | 1 cut(s) | 500 |
| HphI | GGTGA | 1 cut(s) | 74 |
| Hpy166II | GTNNAC | 1 cut(s) | 18 |
| Hpy188I | TCNGA | 1 cut(s) | 468 |
| Hpy188III | TCNNGA | 1 cut(s) | 205 |
| Hpy8I | GTNNAC | 1 cut(s) | 18 |
| HpyAV | CCTTC | 1 cut(s) | 73 |
| HpyCH4IV | ACGT | 1 cut(s) | 436 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 371 |
| HpyF3I | CTNAG | 3 cut(s) | 87, 159, 228 |
| HpySE526I | ACGT | 1 cut(s) | 436 |
| Ksp22I | TGATCA | 1 cut(s) | 64 |
| Kzo9I | GATC | 1 cut(s) | 64 |
| LmnI | GCTCC | 1 cut(s) | 463 |
| MaeII | ACGT | 1 cut(s) | 436 |
| MalI | GATC | 1 cut(s) | 66 |
| MboI | GATC | 1 cut(s) | 64 |
| MboII | GAAGA | 5 cut(s) | 23, 122, 160, 194, 263 |
| MluCI | AATT | 1 cut(s) | 492 |
| MnlI | CCTC | 5 cut(s) | 99, 240, 306, 372, 460 |
| MseI | TTAA | 3 cut(s) | 294, 360, 474 |
| MspI | CCGG | 1 cut(s) | 500 |
| MspR9I | CCNGG | 1 cut(s) | 429 |
| MvaI | CCWGG | 1 cut(s) | 429 |
| MvnI | CGCG | 1 cut(s) | 180 |
| NdeII | GATC | 1 cut(s) | 64 |
| NlaIV | GGNNCC | 1 cut(s) | 447 |
| Psp6I | CCWGG | 1 cut(s) | 427 |
| PspGI | CCWGG | 1 cut(s) | 427 |
| PspN4I | GGNNCC | 1 cut(s) | 447 |
| PspPI | GGNCC | 1 cut(s) | 484 |
| SaqAI | TTAA | 3 cut(s) | 294, 360, 474 |
| Sau3AI | GATC | 1 cut(s) | 64 |
| Sau96I | GGNCC | 1 cut(s) | 484 |
| ScrFI | CCNGG | 1 cut(s) | 429 |
| SetI | ASST | 6 cut(s) | 84, 291, 357, 439, 460, 466 |
| SfcI | CTRYAG | 1 cut(s) | 453 |
| Sse9I | AATT | 1 cut(s) | 492 |
| SsiI | CCGC | 2 cut(s) | 103, 244 |
| SspI | AATATT | 1 cut(s) | 54 |
| StyD4I | CCNGG | 1 cut(s) | 427 |
| StyI | CCWWGG | 1 cut(s) | 305 |
| TaiI | ACGT | 1 cut(s) | 439 |
| TaqII | GACCGA | 3 cut(s) | 152, 224, 293 |
| TasI | AATT | 1 cut(s) | 492 |
| Tru1I | TTAA | 3 cut(s) | 294, 360, 474 |
| Tru9I | TTAA | 3 cut(s) | 294, 360, 474 |
| TscAI | CASTG | 1 cut(s) | 267 |
| TspRI | CASTG | 1 cut(s) | 267 |