Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Reverse (-)

16834261 .. 16836861

Gene Structure 2601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30263

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAAGACTGGAGAATGTAAGTATGGTGCACAATGCAGATTCCATCACCCAATTGATAGGCCAGCAGTGGCATTGTCAACAACAAAGCCATCTCAACAAGAAAATGTGAAGCTAACGCTTGCTGGACTACCTAGGAGAGAGGGTGCCGTTATCTATGTGTATTACCTTAAAACCGGCGCTTGCAAGTATGGTGCAACCTGCAGATTTGACCACCCACCTCCTGGCGAAGTTGTAGCAATGGCAGCTTCACAAGGAAAATCTGATTCTACCGGAGGGAAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

94

Amino Acids

10.07

Weight (kDa)

9.33

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	1 - 17	8.8e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	54 - 73	2.1e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4	PF18345	54 - 71	3.3e-06	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	206
AccB1I	GGYRCC	1 cut(s)	143
AccB7I	CCANNNNNTGG	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	2 cut(s)	112, 245
AluI	AGCT	2 cut(s)	112, 245
Alw21I	GWGCWC	1 cut(s)	31
Alw44I	GTGCAC	1 cut(s)	27
AoxI	GGCC	1 cut(s)	59
ApaLI	GTGCAC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	242
AspA2I	CCTAGG	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	38
AvrII	CCTAGG	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	254
BccI	CCATC	2 cut(s)	51, 97
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	222
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	199
BfoI	RGCGCY	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	206
BisI	GCNGC	1 cut(s)	243
BlnI	CCTAGG	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	131
BsaWI	WCCGGW	1 cut(s)	269
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	13
Bse3DI	GCAATG	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	13
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	254
BshFI	GGCC	1 cut(s)	61
BshNI	GGYRCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	174, 270
BslI	CCNNNNNNNGG	1 cut(s)	221
BsnI	GGCC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	31
BspANI	GGCC	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	145
BspMAI	CTGCAG	1 cut(s)	203
BspMI	ACCTGC	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	243
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	222
BstC8I	GCNNGC	3 cut(s)	63, 120, 181
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	179
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	199
BstSLI	GKGCMC	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	254
BstV2I	GAAGAC	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	61
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	72
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	3 cut(s)	63, 120, 181
CfoI	GCGC	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	173
CviJI	RGCY	4 cut(s)	61, 88, 112, 245
CviKI_1	RGCY	4 cut(s)	61, 88, 112, 245
Eco130I	CCWWGG	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	131
FaiI	YATR	4 cut(s)	24, 156, 189, 283
Fnu4HI	GCNGC	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	2 cut(s)	174, 270
HhaI	GCGC	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HinfI	GANTC	2 cut(s)	39, 263
HpaII	CCGG	2 cut(s)	174, 270
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	2 cut(s)	29, 78
Hpy188I	TCNGA	1 cut(s)	262
Hpy8I	GTNNAC	2 cut(s)	29, 78
HpyCH4V	TGCA	5 cut(s)	29, 36, 183, 194, 201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HspAI	GCGC	1 cut(s)	177
LpnPI	CCDG	6 cut(s)	75, 108, 187, 207, 211, 234
Lsp1109I	GCAGC	1 cut(s)	254
MaeI	CTAG	1 cut(s)	132
MboII	GAAGA	1 cut(s)	16
MfeI	CAATTG	1 cut(s)	51
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	1 cut(s)	51
MnlI	CCTC	3 cut(s)	133, 228, 266
MseI	TTAA	1 cut(s)	168
MspI	CCGG	2 cut(s)	174, 270
MspR9I	CCNGG	1 cut(s)	222
MunI	CAATTG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	242
NlaIV	GGNNCC	1 cut(s)	145
PfeI	GAWTC	2 cut(s)	39, 263
PflMI	CCANNNNNTGG	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	145
PstI	CTGCAG	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	1 cut(s)	243
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	6 cut(s)	114, 133, 168, 200, 220, 247
SfcI	CTRYAG	1 cut(s)	199
Sse9I	AATT	1 cut(s)	51
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	220
StyI	CCWWGG	1 cut(s)	131
TasI	AATT	1 cut(s)	51
TfiI	GAWTC	2 cut(s)	39, 263
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	1 cut(s)	72
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	72
Van91I	CCANNNNNTGG	1 cut(s)	221
VneI	GTGCAC	1 cut(s)	27
XcmI	CCANNNNNNNNNTGG	1 cut(s)	218
XmaJI	CCTAGG	1 cut(s)	131
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.