zinc finger CCCH domain-containing protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 578 |
| AatII | GACGTC | 1 cut(s) | 194 |
| Acc36I | ACCTGC | 3 cut(s) | 758, 1064, 1403 |
| Acc65I | GGTACC | 1 cut(s) | 117 |
| AccB1I | GGYRCC | 2 cut(s) | 26, 117 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1034, 1418 |
| AccI | GTMKAC | 1 cut(s) | 81 |
| AciI | CCGC | 3 cut(s) | 54, 57, 147 |
| AcoI | YGGCCR | 1 cut(s) | 218 |
| AcsI | RAATTY | 5 cut(s) | 440, 492, 596, 755, 1400 |
| AcuI | CTGAAG | 2 cut(s) | 288, 639 |
| AcyI | GRCGYC | 3 cut(s) | 27, 191, 252 |
| AfaI | GTAC | 2 cut(s) | 94, 119 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 488, 1034, 1073, 1139, 1418 |
| AgsI | TTSAA | 3 cut(s) | 619, 1184, 1292 |
| AjnI | CCWGG | 3 cut(s) | 394, 550, 1417 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 484, 516, 1203, 1235 |
| Alw21I | GWGCWC | 1 cut(s) | 453 |
| Alw26I | GTCTC | 1 cut(s) | 541 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 44 |
| AoxI | GGCC | 6 cut(s) | 67, 218, 392, 689, 972, 1147 |
| ApoI | RAATTY | 5 cut(s) | 440, 492, 596, 755, 1400 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 181, 213 |
| AseI | ATTAAT | 1 cut(s) | 1095 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 537 |
| Asp718I | GGTACC | 1 cut(s) | 117 |
| AspA2I | CCTAGG | 1 cut(s) | 1328 |
| AspLEI | GCGC | 2 cut(s) | 29, 348 |
| AspS9I | GGNCC | 3 cut(s) | 133, 972, 1147 |
| AsuC2I | CCSGG | 4 cut(s) | 127, 240, 249, 921 |
| AsuHPI | GGTGA | 3 cut(s) | 755, 935, 1235 |
| AvaII | GGWCC | 1 cut(s) | 133 |
| AvrII | CCTAGG | 1 cut(s) | 1328 |
| AxyI | CCTNAGG | 1 cut(s) | 483 |
| BaeGI | GKGCMC | 1 cut(s) | 415 |
| BalI | TGGCCA | 1 cut(s) | 220 |
| BanI | GGYRCC | 2 cut(s) | 26, 117 |
| BanII | GRGCYC | 3 cut(s) | 240, 453, 702 |
| BbsI | GAAGAC | 2 cut(s) | 204, 1208 |
| Bbv12I | GWGCWC | 1 cut(s) | 453 |
| BccI | CCATC | 7 cut(s) | 18, 271, 288, 474, 793, 1056, 1248 |
| BceAI | ACGGC | 2 cut(s) | 34, 40 |
| BciT130I | CCWGG | 3 cut(s) | 396, 552, 1419 |
| BciVI | GTATCC | 1 cut(s) | 1170 |
| BcnI | CCSGG | 4 cut(s) | 127, 240, 249, 921 |
| BcoDI | GTCTC | 1 cut(s) | 541 |
| BfaI | CTAG | 2 cut(s) | 351, 1329 |
| BfoI | RGCGCY | 2 cut(s) | 30, 349 |
| BfuAI | ACCTGC | 3 cut(s) | 758, 1064, 1403 |
| BfuI | GTATCC | 1 cut(s) | 1170 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1067 |
| BlnI | CCTAGG | 1 cut(s) | 1328 |
| BlpI | GCTNAGC | 2 cut(s) | 792, 1128 |
| Bme1390I | CCNGG | 7 cut(s) | 127, 240, 249, 396, 552, 921, 1419 |
| Bme18I | GGWCC | 1 cut(s) | 133 |
| BmgT120I | GGNCC | 3 cut(s) | 133, 972, 1147 |
| BmiI | GGNNCC | 7 cut(s) | 28, 119, 135, 480, 513, 973, 1148 |
| BmrFI | CCNGG | 7 cut(s) | 127, 240, 249, 396, 552, 921, 1419 |
| BmrI | ACTGGG | 2 cut(s) | 202, 828 |
| BmsI | GCATC | 3 cut(s) | 581, 1451, 1463 |
| BmuI | ACTGGG | 2 cut(s) | 202, 828 |
| BpiI | GAAGAC | 2 cut(s) | 204, 1208 |
| BpmI | CTGGAG | 3 cut(s) | 58, 573, 1479 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 792, 1128 |
| BpuMI | CCSGG | 4 cut(s) | 127, 240, 249, 921 |
| Bsa29I | ATCGAT | 1 cut(s) | 1251 |
| BsaAI | YACGTR | 1 cut(s) | 92 |
| BsaHI | GRCGYC | 3 cut(s) | 27, 191, 252 |
| BsaI | GGTCTC | 1 cut(s) | 541 |
| BsaJI | CCNNGG | 2 cut(s) | 900, 1328 |
| BsaWI | WCCGGW | 1 cut(s) | 114 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1324, 1354 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 488, 1034, 1073, 1139, 1418 |
| Bse118I | RCCGGY | 1 cut(s) | 65 |
| Bse1I | ACTGG | 7 cut(s) | 208, 642, 823, 850, 958, 1286, 1375 |
| Bse21I | CCTNAGG | 1 cut(s) | 483 |
| Bse3DI | GCAATG | 1 cut(s) | 737 |
| BseBI | CCWGG | 3 cut(s) | 396, 552, 1419 |
| BseCI | ATCGAT | 1 cut(s) | 1251 |
| BseDI | CCNNGG | 2 cut(s) | 900, 1328 |
| BseGI | GGATG | 5 cut(s) | 466, 609, 622, 991, 1048 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 488, 1034, 1073, 1139, 1418 |
| BseMI | GCAATG | 1 cut(s) | 737 |
| BseMII | CTCAG | 6 cut(s) | 474, 534, 675, 687, 783, 1142 |
| BseNI | ACTGG | 7 cut(s) | 208, 642, 823, 850, 958, 1286, 1375 |
| BseSI | GKGCMC | 1 cut(s) | 415 |
| BsgI | GTGCAG | 2 cut(s) | 867, 1035 |
| BshFI | GGCC | 6 cut(s) | 69, 220, 394, 691, 974, 1149 |
| BshNI | GGYRCC | 2 cut(s) | 26, 117 |
| BshVI | ATCGAT | 1 cut(s) | 1251 |
| BsiHKAI | GWGCWC | 1 cut(s) | 453 |
| BsiSI | CCGG | 8 cut(s) | 66, 115, 126, 240, 249, 836, 920, 1067 |
| BslFI | GGGAC | 2 cut(s) | 190, 835 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 488, 1034, 1073, 1139, 1418 |
| BsmAI | GTCTC | 1 cut(s) | 541 |
| BsmFI | GGGAC | 2 cut(s) | 190, 835 |
| BsmI | GAATGC | 1 cut(s) | 1190 |
| BsnI | GGCC | 6 cut(s) | 69, 220, 394, 691, 974, 1149 |
| Bso31I | GGTCTC | 1 cut(s) | 541 |
| Bsp1286I | GDGCHC | 4 cut(s) | 240, 415, 453, 702 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 792, 1128 |
| BspACI | CCGC | 3 cut(s) | 54, 57, 147 |
| BspANI | GGCC | 6 cut(s) | 69, 220, 394, 691, 974, 1149 |
| BspCNI | CTCAG | 6 cut(s) | 475, 535, 676, 688, 784, 1141 |
| BspDI | ATCGAT | 1 cut(s) | 1251 |
| BspLI | GGNNCC | 7 cut(s) | 28, 119, 135, 480, 513, 973, 1148 |
| BspMI | ACCTGC | 3 cut(s) | 758, 1064, 1403 |
| BspT107I | GGYRCC | 2 cut(s) | 26, 117 |
| BspTNI | GGTCTC | 1 cut(s) | 541 |
| BsrDI | GCAATG | 1 cut(s) | 737 |
| BsrFI | RCCGGY | 1 cut(s) | 65 |
| BsrI | ACTGG | 7 cut(s) | 208, 642, 823, 850, 958, 1286, 1375 |
| BssAI | RCCGGY | 1 cut(s) | 65 |
| BssECI | CCNNGG | 2 cut(s) | 900, 1328 |
| BssNI | GRCGYC | 3 cut(s) | 27, 191, 252 |
| BssT1I | CCWWGG | 2 cut(s) | 900, 1328 |
| Bst2UI | CCWGG | 3 cut(s) | 396, 552, 1419 |
| Bst4CI | ACNGT | 2 cut(s) | 1138, 1156 |
| BstACI | GRCGYC | 3 cut(s) | 27, 191, 252 |
| BstBAI | YACGTR | 1 cut(s) | 92 |
| BstC8I | GCNNGC | 3 cut(s) | 67, 222, 367 |
| BstDEI | CTNAG | 6 cut(s) | 483, 543, 684, 696, 792, 1128 |
| BstF5I | GGATG | 5 cut(s) | 466, 609, 622, 991, 1048 |
| BstH2I | RGCGCY | 2 cut(s) | 30, 349 |
| BstHHI | GCGC | 2 cut(s) | 29, 348 |
| BstMAI | GTCTC | 1 cut(s) | 541 |
| BstNI | CCWGG | 3 cut(s) | 396, 552, 1419 |
| BstNSI | RCATGY | 1 cut(s) | 1380 |
| BstSCI | CCNGG | 7 cut(s) | 125, 238, 247, 394, 550, 919, 1417 |
| BstSLI | GKGCMC | 1 cut(s) | 415 |
| BstV2I | GAAGAC | 2 cut(s) | 204, 1208 |
| Bsu15I | ATCGAT | 1 cut(s) | 1251 |
| Bsu36I | CCTNAGG | 1 cut(s) | 483 |
| BsuI | GTATCC | 1 cut(s) | 1170 |
| BsuRI | GGCC | 6 cut(s) | 69, 220, 394, 691, 974, 1149 |
| BsuTUI | ATCGAT | 1 cut(s) | 1251 |
| BtsCI | GGATG | 5 cut(s) | 466, 609, 622, 991, 1048 |
| BtsI | GCAGTG | 2 cut(s) | 60, 1269 |
| BtsIMutI | CAGTG | 2 cut(s) | 60, 1269 |
| BveI | ACCTGC | 3 cut(s) | 758, 1064, 1403 |
| Cac8I | GCNNGC | 3 cut(s) | 67, 222, 367 |
| CaiI | CAGNNNCTG | 1 cut(s) | 44 |
| CfoI | GCGC | 2 cut(s) | 29, 348 |
| Cfr10I | RCCGGY | 1 cut(s) | 65 |
| Cfr13I | GGNCC | 3 cut(s) | 133, 972, 1147 |
| ClaI | ATCGAT | 1 cut(s) | 1251 |
| CseI | GACGC | 2 cut(s) | 67, 241 |
| Csp6I | GTAC | 2 cut(s) | 93, 118 |
| CviAII | CATG | 5 cut(s) | 216, 705, 718, 1377, 1435 |
| CviQI | GTAC | 2 cut(s) | 93, 118 |
| DdeI | CTNAG | 6 cut(s) | 483, 543, 684, 696, 792, 1128 |
| DinI | GGCGCC | 1 cut(s) | 28 |
| EaeI | YGGCCR | 1 cut(s) | 218 |
| EciI | GGCGGA | 1 cut(s) | 136 |
| Ecl136II | GAGCTC | 1 cut(s) | 451 |
| Eco130I | CCWWGG | 2 cut(s) | 900, 1328 |
| Eco147I | AGGCCT | 1 cut(s) | 691 |
| Eco24I | GRGCYC | 3 cut(s) | 240, 453, 702 |
| Eco31I | GGTCTC | 1 cut(s) | 541 |
| Eco32I | GATATC | 1 cut(s) | 775 |
| Eco47I | GGWCC | 1 cut(s) | 133 |
| Eco53kI | GAGCTC | 1 cut(s) | 451 |
| Eco57I | CTGAAG | 2 cut(s) | 288, 639 |
| Eco81I | CCTNAGG | 1 cut(s) | 483 |
| EcoICRI | GAGCTC | 1 cut(s) | 451 |
| EcoRI | GAATTC | 1 cut(s) | 492 |
| EcoRII | CCWGG | 3 cut(s) | 394, 550, 1417 |
| EcoRV | GATATC | 1 cut(s) | 775 |
| EcoT14I | CCWWGG | 2 cut(s) | 900, 1328 |
| EcoT38I | GRGCYC | 3 cut(s) | 240, 453, 702 |
| EgeI | GGCGCC | 1 cut(s) | 28 |
| EheI | GGCGCC | 1 cut(s) | 28 |
| ErhI | CCWWGG | 2 cut(s) | 900, 1328 |
| FaeI | CATG | 5 cut(s) | 219, 708, 721, 1380, 1438 |
| FaqI | GGGAC | 2 cut(s) | 190, 835 |
| FatI | CATG | 5 cut(s) | 215, 704, 717, 1376, 1434 |
| FblI | GTMKAC | 1 cut(s) | 81 |
| FokI | GGATG | 5 cut(s) | 453, 609, 616, 978, 1035 |
| FriOI | GRGCYC | 3 cut(s) | 240, 453, 702 |
| FspBI | CTAG | 2 cut(s) | 351, 1329 |
| GlaI | GCGC | 2 cut(s) | 28, 347 |
| GsuI | CTGGAG | 3 cut(s) | 58, 573, 1479 |
| HaeII | RGCGCY | 2 cut(s) | 30, 349 |
| HaeIII | GGCC | 6 cut(s) | 69, 220, 394, 691, 974, 1149 |
| HapII | CCGG | 8 cut(s) | 66, 115, 126, 240, 249, 836, 920, 1067 |
| HgaI | GACGC | 2 cut(s) | 67, 241 |
| HhaI | GCGC | 2 cut(s) | 29, 348 |
| Hin1I | GRCGYC | 3 cut(s) | 27, 191, 252 |
| Hin1II | CATG | 5 cut(s) | 219, 708, 721, 1380, 1438 |
| Hin6I | GCGC | 2 cut(s) | 27, 346 |
| HinP1I | GCGC | 2 cut(s) | 27, 346 |
| HincII | GTYRAC | 1 cut(s) | 1275 |
| HindII | GTYRAC | 1 cut(s) | 1275 |
| HindIII | AAGCTT | 2 cut(s) | 321, 860 |
| HinfI | GANTC | 2 cut(s) | 533, 583 |
| HpaII | CCGG | 8 cut(s) | 66, 115, 126, 240, 249, 836, 920, 1067 |
| HphI | GGTGA | 3 cut(s) | 755, 935, 1235 |
| Hpy166II | GTNNAC | 3 cut(s) | 82, 926, 1275 |
| Hpy188I | TCNGA | 7 cut(s) | 133, 268, 285, 627, 658, 697, 1080 |
| Hpy188III | TCNNGA | 7 cut(s) | 227, 482, 497, 542, 778, 995, 1458 |
| Hpy8I | GTNNAC | 3 cut(s) | 82, 926, 1275 |
| Hpy99I | CGWCG | 2 cut(s) | 193, 196 |
| HpyAV | CCTTC | 4 cut(s) | 397, 548, 622, 702 |
| HpyCH4III | ACNGT | 2 cut(s) | 1138, 1156 |
| HpyCH4IV | ACGT | 2 cut(s) | 91, 191 |
| HpyF3I | CTNAG | 6 cut(s) | 483, 543, 684, 696, 792, 1128 |
| HpySE526I | ACGT | 2 cut(s) | 91, 191 |
| Hsp92I | GRCGYC | 3 cut(s) | 27, 191, 252 |
| Hsp92II | CATG | 5 cut(s) | 219, 708, 721, 1380, 1438 |
| HspAI | GCGC | 2 cut(s) | 27, 346 |
| KasI | GGCGCC | 1 cut(s) | 26 |
| KpnI | GGTACC | 1 cut(s) | 121 |
| KroI | GCCGGC | 1 cut(s) | 65 |
| KroNI | GCCGGC | 1 cut(s) | 67 |
| LmnI | GCTCC | 4 cut(s) | 229, 529, 904, 1451 |
| LweI | GCATC | 3 cut(s) | 581, 1451, 1463 |
| MaeI | CTAG | 2 cut(s) | 351, 1329 |
| MaeII | ACGT | 2 cut(s) | 91, 191 |
| MaeIII | GTNAC | 1 cut(s) | 1264 |
| MboII | GAAGA | 2 cut(s) | 204, 1213 |
| MfeI | CAATTG | 1 cut(s) | 1032 |
| MhlI | GDGCHC | 4 cut(s) | 240, 415, 453, 702 |
| MlsI | TGGCCA | 1 cut(s) | 220 |
| MluCI | AATT | 8 cut(s) | 370, 440, 492, 596, 755, 807, 1032, 1400 |
| MluNI | TGGCCA | 1 cut(s) | 220 |
| Mly113I | GGCGCC | 1 cut(s) | 27 |
| MlyI | GAGTC | 1 cut(s) | 577 |
| MmeI | TCCRAC | 1 cut(s) | 111 |
| Mox20I | TGGCCA | 1 cut(s) | 220 |
| MroNI | GCCGGC | 1 cut(s) | 65 |
| MroXI | GAANNNNTTC | 1 cut(s) | 537 |
| MscI | TGGCCA | 1 cut(s) | 220 |
| MseI | TTAA | 2 cut(s) | 1095, 1305 |
| Msp20I | TGGCCA | 1 cut(s) | 220 |
| MspA1I | CMGCKG | 3 cut(s) | 41, 791, 1103 |
| MspI | CCGG | 8 cut(s) | 66, 115, 126, 240, 249, 836, 920, 1067 |
| MspR9I | CCNGG | 7 cut(s) | 127, 240, 249, 396, 552, 921, 1419 |
| MunI | CAATTG | 1 cut(s) | 1032 |
| Mva1269I | GAATGC | 1 cut(s) | 1190 |
| MvaI | CCWGG | 3 cut(s) | 396, 552, 1419 |
| NaeI | GCCGGC | 1 cut(s) | 67 |
| NarI | GGCGCC | 1 cut(s) | 27 |
| NciI | CCSGG | 4 cut(s) | 127, 240, 249, 921 |
| NgoMIV | GCCGGC | 1 cut(s) | 65 |
| NlaIII | CATG | 5 cut(s) | 219, 708, 721, 1380, 1438 |
| NlaIV | GGNNCC | 7 cut(s) | 28, 119, 135, 480, 513, 973, 1148 |
| NmuCI | GTSAC | 1 cut(s) | 1264 |
| NspI | RCATGY | 1 cut(s) | 1380 |
| PceI | AGGCCT | 1 cut(s) | 691 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 240 |
| PctI | GAATGC | 1 cut(s) | 1190 |
| PdiI | GCCGGC | 1 cut(s) | 67 |
| PdmI | GAANNNNTTC | 1 cut(s) | 537 |
| PfeI | GAWTC | 1 cut(s) | 533 |
| PflFI | GACNNNGTC | 1 cut(s) | 1270 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1034, 1418 |
| PleI | GAGTC | 1 cut(s) | 577 |
| PluTI | GGCGCC | 1 cut(s) | 30 |
| PpsI | GAGTC | 1 cut(s) | 577 |
| Ppu21I | YACGTR | 1 cut(s) | 92 |
| PshBI | ATTAAT | 1 cut(s) | 1095 |
| PsiI | TTATAA | 1 cut(s) | 578 |
| Psp124BI | GAGCTC | 1 cut(s) | 453 |
| Psp6I | CCWGG | 3 cut(s) | 394, 550, 1417 |
| PspGI | CCWGG | 3 cut(s) | 394, 550, 1417 |
| PspN4I | GGNNCC | 7 cut(s) | 28, 119, 135, 480, 513, 973, 1148 |
| PspPI | GGNCC | 3 cut(s) | 133, 972, 1147 |
| PstNI | CAGNNNCTG | 1 cut(s) | 44 |
| PsyI | GACNNNGTC | 1 cut(s) | 1270 |
| PvuII | CAGCTG | 3 cut(s) | 41, 791, 1103 |
| RsaI | GTAC | 2 cut(s) | 94, 119 |
| RsaNI | GTAC | 2 cut(s) | 93, 118 |
| SacI | GAGCTC | 1 cut(s) | 453 |
| SaqAI | TTAA | 2 cut(s) | 1095, 1305 |
| Sau96I | GGNCC | 3 cut(s) | 133, 972, 1147 |
| SchI | GAGTC | 1 cut(s) | 577 |
| ScrFI | CCNGG | 7 cut(s) | 127, 240, 249, 396, 552, 921, 1419 |
| SduI | GDGCHC | 4 cut(s) | 240, 415, 453, 702 |
| SfaNI | GCATC | 3 cut(s) | 581, 1451, 1463 |
| SfoI | GGCGCC | 1 cut(s) | 28 |
| SinI | GGWCC | 1 cut(s) | 133 |
| Sse9I | AATT | 8 cut(s) | 370, 440, 492, 596, 755, 807, 1032, 1400 |
| SseBI | AGGCCT | 1 cut(s) | 691 |
| SsiI | CCGC | 3 cut(s) | 54, 57, 147 |
| SspDI | GGCGCC | 1 cut(s) | 26 |
| SspMI | CTAG | 2 cut(s) | 351, 1329 |
| SstI | GAGCTC | 1 cut(s) | 453 |
| StuI | AGGCCT | 1 cut(s) | 691 |
| StyD4I | CCNGG | 7 cut(s) | 125, 238, 247, 394, 550, 919, 1417 |
| StyI | CCWWGG | 2 cut(s) | 900, 1328 |
| TaaI | ACNGT | 2 cut(s) | 1138, 1156 |
| TaiI | ACGT | 2 cut(s) | 94, 194 |
| TaqI | TCGA | 3 cut(s) | 5, 234, 1251 |
| TasI | AATT | 8 cut(s) | 370, 440, 492, 596, 755, 807, 1032, 1400 |
| TauI | GCSGC | 2 cut(s) | 56, 59 |
| TfiI | GAWTC | 1 cut(s) | 533 |
| Tru1I | TTAA | 2 cut(s) | 1095, 1305 |
| Tru9I | TTAA | 2 cut(s) | 1095, 1305 |
| TscAI | CASTG | 2 cut(s) | 67, 1269 |
| TseFI | GTSAC | 1 cut(s) | 1264 |
| Tsp45I | GTSAC | 1 cut(s) | 1264 |
| TspDTI | ATGAA | 5 cut(s) | 204, 734, 749, 861, 1214 |
| TspRI | CASTG | 2 cut(s) | 67, 1269 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1270 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1034, 1418 |
| VpaK11BI | GGWCC | 1 cut(s) | 133 |
| VspI | ATTAAT | 1 cut(s) | 1095 |
| XapI | RAATTY | 5 cut(s) | 440, 492, 596, 755, 1400 |
| XceI | RCATGY | 1 cut(s) | 1380 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1415 |
| XmaJI | CCTAGG | 1 cut(s) | 1328 |
| XmiI | GTMKAC | 1 cut(s) | 81 |
| XmnI | GAANNNNTTC | 1 cut(s) | 537 |
| XspI | CTAG | 2 cut(s) | 351, 1329 |
| ZraI | GACGTC | 1 cut(s) | 192 |