Prupe.4G124000_v2.0.a1

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
6769329 .. 6775371
6043 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G124000.2

Sequence Viewer

Length: 1500 bp
ATGTCGAGCCATCTCTACGGCTACGGCGCCACACAATCAGCTGCTGCTGCTGCCGCCGCCACTGCCGGCCTCTCCAGCGTCTACACCTCACGTACCCTAACCGACCCGACCCTCCGGTACCTTTCCGGGTCGGACCCTTTCGCCTCCGCCACCGACCACCATAGCCGAAGTAGCTCTATGTATCTGGCGACGTCGCATTTGATGTCCCAGTCTTCATGGCCAGCTCCCGATGTCGAGCCCGGCGTTCCCGGCGTCAAACGCCCATCTGAAGCACTCTACCATCAGAGTTTTATGGGTGCGTATAATACGATTGGGCAAGAAGCTTGGTATTCTGCATTAGCCAAGCGCCCTAGATATGAGAGTGCAAGCAATTTGCCTATTTATCCACAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGAGCTCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATTCCAGATTGGAAAGAGGTTCCACTTGTCGCTCCAAGTGAATCCCTTCCTGAGAGACCTGGAGAGCCAGATTGTCCATACTTTATAAAGACTCAAAGATGCAAATTTGGGATGAGGTGCAAGTTCAATCATCCGAAGGAAAAACTGGCTGCTGCTGTTGCTTCAGAAAATGCTGATGTTTTTGCCTTACCTGAGAGGCCTTCTGAGCCCCCATGTGCTTTCTACATGAAAACGGGGCAATGTAAGTTTGGTGCAACCTGCAAATTTCATCACCCAAAAGATATCCAGATACCATCAGCTGAGCAAGAGAATAAAATTGGAGAAACTGGGACAACTATTCAGCCGGAGGGAACTGGATTTGCTGTGAAGCTTCCTGTTTCATTCAGCCCTGCACTATTATATAACTCCAAGGAGCTTCCTGTAAGACCGGGTGAACCCGATTGTCCATTCTACCTGAAAACTGGAAGTTGCAAGTATGGGGCCACTTGTCGCTACAATCATCCTGATAGATATGATTTTTGTGCAGCAATCAATCCACCAATTGGTGCAATCAGCCATCCCATTGTAGCCCCTCCGGCAGCAGGTCTGAACATAGGAGTTATTAATCCAGCTGCCTCCATTTATCAAACTTTGGCTCAGCCAACGGTGGGAGGGGGCCAAACTGTGTATCCTCAACGCTTTGGACAGATTGAATGCGATTACTATATGAAGACAGGGGAATGTAGGTTTGGCGAACAATGCAAATACCATCACCCAATCGATAGGTCAGCAGTGACCCTGTCAACAACAAAACCAGTTCAACAACAAAATGTTAAGCTAACTCTTGCTGGACTACCTAGGAGAGAGGGTGTTGCAATCTGTGTGTATTACCTGAAAACTGGCACATGCAAGTATGGTGCAACCTGCAAATTTGACCACCCACCTCCTGGCGAGGTTATGGGCATGGCAGCATCACAAGGAGCATCTGGAGGGGAAGCAAACGATTTCACACACGAACAGCAGCAGTGA

Protein Analysis

500

Amino Acids

54.35

Weight (kDa)

7.78

Isoelectric Point (pI)

49.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 578
AatII GACGTC 1 cut(s) 194
Acc36I ACCTGC 3 cut(s) 758, 1064, 1403
Acc65I GGTACC 1 cut(s) 117
AccB1I GGYRCC 2 cut(s) 26, 117
AccB7I CCANNNNNTGG 2 cut(s) 1034, 1418
AccI GTMKAC 1 cut(s) 81
AciI CCGC 3 cut(s) 54, 57, 147
AcoI YGGCCR 1 cut(s) 218
AcsI RAATTY 5 cut(s) 440, 492, 596, 755, 1400
AcuI CTGAAG 2 cut(s) 288, 639
AcyI GRCGYC 3 cut(s) 27, 191, 252
AfaI GTAC 2 cut(s) 94, 119
AfiI CCNNNNNNNGG 5 cut(s) 488, 1034, 1073, 1139, 1418
AgsI TTSAA 3 cut(s) 619, 1184, 1292
AjnI CCWGG 3 cut(s) 394, 550, 1417
AjuI GAANNNNNNNTTGG 4 cut(s) 484, 516, 1203, 1235
Alw21I GWGCWC 1 cut(s) 453
Alw26I GTCTC 1 cut(s) 541
AlwNI CAGNNNCTG 1 cut(s) 44
AoxI GGCC 6 cut(s) 67, 218, 392, 689, 972, 1147
ApoI RAATTY 5 cut(s) 440, 492, 596, 755, 1400
ArsI GACNNNNNNTTYG 2 cut(s) 181, 213
AseI ATTAAT 1 cut(s) 1095
Asp700I GAANNNNTTC 1 cut(s) 537
Asp718I GGTACC 1 cut(s) 117
AspA2I CCTAGG 1 cut(s) 1328
AspLEI GCGC 2 cut(s) 29, 348
AspS9I GGNCC 3 cut(s) 133, 972, 1147
AsuC2I CCSGG 4 cut(s) 127, 240, 249, 921
AsuHPI GGTGA 3 cut(s) 755, 935, 1235
AvaII GGWCC 1 cut(s) 133
AvrII CCTAGG 1 cut(s) 1328
AxyI CCTNAGG 1 cut(s) 483
BaeGI GKGCMC 1 cut(s) 415
BalI TGGCCA 1 cut(s) 220
BanI GGYRCC 2 cut(s) 26, 117
BanII GRGCYC 3 cut(s) 240, 453, 702
BbsI GAAGAC 2 cut(s) 204, 1208
Bbv12I GWGCWC 1 cut(s) 453
BccI CCATC 7 cut(s) 18, 271, 288, 474, 793, 1056, 1248
BceAI ACGGC 2 cut(s) 34, 40
BciT130I CCWGG 3 cut(s) 396, 552, 1419
BciVI GTATCC 1 cut(s) 1170
BcnI CCSGG 4 cut(s) 127, 240, 249, 921
BcoDI GTCTC 1 cut(s) 541
BfaI CTAG 2 cut(s) 351, 1329
BfoI RGCGCY 2 cut(s) 30, 349
BfuAI ACCTGC 3 cut(s) 758, 1064, 1403
BfuI GTATCC 1 cut(s) 1170
BglI GCCNNNNNGGC 1 cut(s) 1067
BlnI CCTAGG 1 cut(s) 1328
BlpI GCTNAGC 2 cut(s) 792, 1128
Bme1390I CCNGG 7 cut(s) 127, 240, 249, 396, 552, 921, 1419
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 3 cut(s) 133, 972, 1147
BmiI GGNNCC 7 cut(s) 28, 119, 135, 480, 513, 973, 1148
BmrFI CCNGG 7 cut(s) 127, 240, 249, 396, 552, 921, 1419
BmrI ACTGGG 2 cut(s) 202, 828
BmsI GCATC 3 cut(s) 581, 1451, 1463
BmuI ACTGGG 2 cut(s) 202, 828
BpiI GAAGAC 2 cut(s) 204, 1208
BpmI CTGGAG 3 cut(s) 58, 573, 1479
Bpu1102I GCTNAGC 2 cut(s) 792, 1128
BpuMI CCSGG 4 cut(s) 127, 240, 249, 921
Bsa29I ATCGAT 1 cut(s) 1251
BsaAI YACGTR 1 cut(s) 92
BsaHI GRCGYC 3 cut(s) 27, 191, 252
BsaI GGTCTC 1 cut(s) 541
BsaJI CCNNGG 2 cut(s) 900, 1328
BsaWI WCCGGW 1 cut(s) 114
BsaXI ACNNNNNCTCC 2 cut(s) 1324, 1354
Bsc4I CCNNNNNNNGG 5 cut(s) 488, 1034, 1073, 1139, 1418
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 7 cut(s) 208, 642, 823, 850, 958, 1286, 1375
Bse21I CCTNAGG 1 cut(s) 483
Bse3DI GCAATG 1 cut(s) 737
BseBI CCWGG 3 cut(s) 396, 552, 1419
BseCI ATCGAT 1 cut(s) 1251
BseDI CCNNGG 2 cut(s) 900, 1328
BseGI GGATG 5 cut(s) 466, 609, 622, 991, 1048
BseLI CCNNNNNNNGG 5 cut(s) 488, 1034, 1073, 1139, 1418
BseMI GCAATG 1 cut(s) 737
BseMII CTCAG 6 cut(s) 474, 534, 675, 687, 783, 1142
BseNI ACTGG 7 cut(s) 208, 642, 823, 850, 958, 1286, 1375
BseSI GKGCMC 1 cut(s) 415
BsgI GTGCAG 2 cut(s) 867, 1035
BshFI GGCC 6 cut(s) 69, 220, 394, 691, 974, 1149
BshNI GGYRCC 2 cut(s) 26, 117
BshVI ATCGAT 1 cut(s) 1251
BsiHKAI GWGCWC 1 cut(s) 453
BsiSI CCGG 8 cut(s) 66, 115, 126, 240, 249, 836, 920, 1067
BslFI GGGAC 2 cut(s) 190, 835
BslI CCNNNNNNNGG 5 cut(s) 488, 1034, 1073, 1139, 1418
BsmAI GTCTC 1 cut(s) 541
BsmFI GGGAC 2 cut(s) 190, 835
BsmI GAATGC 1 cut(s) 1190
BsnI GGCC 6 cut(s) 69, 220, 394, 691, 974, 1149
Bso31I GGTCTC 1 cut(s) 541
Bsp1286I GDGCHC 4 cut(s) 240, 415, 453, 702
Bsp1720I GCTNAGC 2 cut(s) 792, 1128
BspACI CCGC 3 cut(s) 54, 57, 147
BspANI GGCC 6 cut(s) 69, 220, 394, 691, 974, 1149
BspCNI CTCAG 6 cut(s) 475, 535, 676, 688, 784, 1141
BspDI ATCGAT 1 cut(s) 1251
BspLI GGNNCC 7 cut(s) 28, 119, 135, 480, 513, 973, 1148
BspMI ACCTGC 3 cut(s) 758, 1064, 1403
BspT107I GGYRCC 2 cut(s) 26, 117
BspTNI GGTCTC 1 cut(s) 541
BsrDI GCAATG 1 cut(s) 737
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 7 cut(s) 208, 642, 823, 850, 958, 1286, 1375
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 2 cut(s) 900, 1328
BssNI GRCGYC 3 cut(s) 27, 191, 252
BssT1I CCWWGG 2 cut(s) 900, 1328
Bst2UI CCWGG 3 cut(s) 396, 552, 1419
Bst4CI ACNGT 2 cut(s) 1138, 1156
BstACI GRCGYC 3 cut(s) 27, 191, 252
BstBAI YACGTR 1 cut(s) 92
BstC8I GCNNGC 3 cut(s) 67, 222, 367
BstDEI CTNAG 6 cut(s) 483, 543, 684, 696, 792, 1128
BstF5I GGATG 5 cut(s) 466, 609, 622, 991, 1048
BstH2I RGCGCY 2 cut(s) 30, 349
BstHHI GCGC 2 cut(s) 29, 348
BstMAI GTCTC 1 cut(s) 541
BstNI CCWGG 3 cut(s) 396, 552, 1419
BstNSI RCATGY 1 cut(s) 1380
BstSCI CCNGG 7 cut(s) 125, 238, 247, 394, 550, 919, 1417
BstSLI GKGCMC 1 cut(s) 415
BstV2I GAAGAC 2 cut(s) 204, 1208
Bsu15I ATCGAT 1 cut(s) 1251
Bsu36I CCTNAGG 1 cut(s) 483
BsuI GTATCC 1 cut(s) 1170
BsuRI GGCC 6 cut(s) 69, 220, 394, 691, 974, 1149
BsuTUI ATCGAT 1 cut(s) 1251
BtsCI GGATG 5 cut(s) 466, 609, 622, 991, 1048
BtsI GCAGTG 2 cut(s) 60, 1269
BtsIMutI CAGTG 2 cut(s) 60, 1269
BveI ACCTGC 3 cut(s) 758, 1064, 1403
Cac8I GCNNGC 3 cut(s) 67, 222, 367
CaiI CAGNNNCTG 1 cut(s) 44
CfoI GCGC 2 cut(s) 29, 348
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 133, 972, 1147
ClaI ATCGAT 1 cut(s) 1251
CseI GACGC 2 cut(s) 67, 241
Csp6I GTAC 2 cut(s) 93, 118
CviAII CATG 5 cut(s) 216, 705, 718, 1377, 1435
CviQI GTAC 2 cut(s) 93, 118
DdeI CTNAG 6 cut(s) 483, 543, 684, 696, 792, 1128
DinI GGCGCC 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 218
EciI GGCGGA 1 cut(s) 136
Ecl136II GAGCTC 1 cut(s) 451
Eco130I CCWWGG 2 cut(s) 900, 1328
Eco147I AGGCCT 1 cut(s) 691
Eco24I GRGCYC 3 cut(s) 240, 453, 702
Eco31I GGTCTC 1 cut(s) 541
Eco32I GATATC 1 cut(s) 775
Eco47I GGWCC 1 cut(s) 133
Eco53kI GAGCTC 1 cut(s) 451
Eco57I CTGAAG 2 cut(s) 288, 639
Eco81I CCTNAGG 1 cut(s) 483
EcoICRI GAGCTC 1 cut(s) 451
EcoRI GAATTC 1 cut(s) 492
EcoRII CCWGG 3 cut(s) 394, 550, 1417
EcoRV GATATC 1 cut(s) 775
EcoT14I CCWWGG 2 cut(s) 900, 1328
EcoT38I GRGCYC 3 cut(s) 240, 453, 702
EgeI GGCGCC 1 cut(s) 28
EheI GGCGCC 1 cut(s) 28
ErhI CCWWGG 2 cut(s) 900, 1328
FaeI CATG 5 cut(s) 219, 708, 721, 1380, 1438
FaqI GGGAC 2 cut(s) 190, 835
FatI CATG 5 cut(s) 215, 704, 717, 1376, 1434
FblI GTMKAC 1 cut(s) 81
FokI GGATG 5 cut(s) 453, 609, 616, 978, 1035
FriOI GRGCYC 3 cut(s) 240, 453, 702
FspBI CTAG 2 cut(s) 351, 1329
GlaI GCGC 2 cut(s) 28, 347
GsuI CTGGAG 3 cut(s) 58, 573, 1479
HaeII RGCGCY 2 cut(s) 30, 349
HaeIII GGCC 6 cut(s) 69, 220, 394, 691, 974, 1149
HapII CCGG 8 cut(s) 66, 115, 126, 240, 249, 836, 920, 1067
HgaI GACGC 2 cut(s) 67, 241
HhaI GCGC 2 cut(s) 29, 348
Hin1I GRCGYC 3 cut(s) 27, 191, 252
Hin1II CATG 5 cut(s) 219, 708, 721, 1380, 1438
Hin6I GCGC 2 cut(s) 27, 346
HinP1I GCGC 2 cut(s) 27, 346
HincII GTYRAC 1 cut(s) 1275
HindII GTYRAC 1 cut(s) 1275
HindIII AAGCTT 2 cut(s) 321, 860
HinfI GANTC 2 cut(s) 533, 583
HpaII CCGG 8 cut(s) 66, 115, 126, 240, 249, 836, 920, 1067
HphI GGTGA 3 cut(s) 755, 935, 1235
Hpy166II GTNNAC 3 cut(s) 82, 926, 1275
Hpy188I TCNGA 7 cut(s) 133, 268, 285, 627, 658, 697, 1080
Hpy188III TCNNGA 7 cut(s) 227, 482, 497, 542, 778, 995, 1458
Hpy8I GTNNAC 3 cut(s) 82, 926, 1275
Hpy99I CGWCG 2 cut(s) 193, 196
HpyAV CCTTC 4 cut(s) 397, 548, 622, 702
HpyCH4III ACNGT 2 cut(s) 1138, 1156
HpyCH4IV ACGT 2 cut(s) 91, 191
HpyF3I CTNAG 6 cut(s) 483, 543, 684, 696, 792, 1128
HpySE526I ACGT 2 cut(s) 91, 191
Hsp92I GRCGYC 3 cut(s) 27, 191, 252
Hsp92II CATG 5 cut(s) 219, 708, 721, 1380, 1438
HspAI GCGC 2 cut(s) 27, 346
KasI GGCGCC 1 cut(s) 26
KpnI GGTACC 1 cut(s) 121
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
LmnI GCTCC 4 cut(s) 229, 529, 904, 1451
LweI GCATC 3 cut(s) 581, 1451, 1463
MaeI CTAG 2 cut(s) 351, 1329
MaeII ACGT 2 cut(s) 91, 191
MaeIII GTNAC 1 cut(s) 1264
MboII GAAGA 2 cut(s) 204, 1213
MfeI CAATTG 1 cut(s) 1032
MhlI GDGCHC 4 cut(s) 240, 415, 453, 702
MlsI TGGCCA 1 cut(s) 220
MluCI AATT 8 cut(s) 370, 440, 492, 596, 755, 807, 1032, 1400
MluNI TGGCCA 1 cut(s) 220
Mly113I GGCGCC 1 cut(s) 27
MlyI GAGTC 1 cut(s) 577
MmeI TCCRAC 1 cut(s) 111
Mox20I TGGCCA 1 cut(s) 220
MroNI GCCGGC 1 cut(s) 65
MroXI GAANNNNTTC 1 cut(s) 537
MscI TGGCCA 1 cut(s) 220
MseI TTAA 2 cut(s) 1095, 1305
Msp20I TGGCCA 1 cut(s) 220
MspA1I CMGCKG 3 cut(s) 41, 791, 1103
MspI CCGG 8 cut(s) 66, 115, 126, 240, 249, 836, 920, 1067
MspR9I CCNGG 7 cut(s) 127, 240, 249, 396, 552, 921, 1419
MunI CAATTG 1 cut(s) 1032
Mva1269I GAATGC 1 cut(s) 1190
MvaI CCWGG 3 cut(s) 396, 552, 1419
NaeI GCCGGC 1 cut(s) 67
NarI GGCGCC 1 cut(s) 27
NciI CCSGG 4 cut(s) 127, 240, 249, 921
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 5 cut(s) 219, 708, 721, 1380, 1438
NlaIV GGNNCC 7 cut(s) 28, 119, 135, 480, 513, 973, 1148
NmuCI GTSAC 1 cut(s) 1264
NspI RCATGY 1 cut(s) 1380
PceI AGGCCT 1 cut(s) 691
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PctI GAATGC 1 cut(s) 1190
PdiI GCCGGC 1 cut(s) 67
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 1 cut(s) 533
PflFI GACNNNGTC 1 cut(s) 1270
PflMI CCANNNNNTGG 2 cut(s) 1034, 1418
PleI GAGTC 1 cut(s) 577
PluTI GGCGCC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 577
Ppu21I YACGTR 1 cut(s) 92
PshBI ATTAAT 1 cut(s) 1095
PsiI TTATAA 1 cut(s) 578
Psp124BI GAGCTC 1 cut(s) 453
Psp6I CCWGG 3 cut(s) 394, 550, 1417
PspGI CCWGG 3 cut(s) 394, 550, 1417
PspN4I GGNNCC 7 cut(s) 28, 119, 135, 480, 513, 973, 1148
PspPI GGNCC 3 cut(s) 133, 972, 1147
PstNI CAGNNNCTG 1 cut(s) 44
PsyI GACNNNGTC 1 cut(s) 1270
PvuII CAGCTG 3 cut(s) 41, 791, 1103
RsaI GTAC 2 cut(s) 94, 119
RsaNI GTAC 2 cut(s) 93, 118
SacI GAGCTC 1 cut(s) 453
SaqAI TTAA 2 cut(s) 1095, 1305
Sau96I GGNCC 3 cut(s) 133, 972, 1147
SchI GAGTC 1 cut(s) 577
ScrFI CCNGG 7 cut(s) 127, 240, 249, 396, 552, 921, 1419
SduI GDGCHC 4 cut(s) 240, 415, 453, 702
SfaNI GCATC 3 cut(s) 581, 1451, 1463
SfoI GGCGCC 1 cut(s) 28
SinI GGWCC 1 cut(s) 133
Sse9I AATT 8 cut(s) 370, 440, 492, 596, 755, 807, 1032, 1400
SseBI AGGCCT 1 cut(s) 691
SsiI CCGC 3 cut(s) 54, 57, 147
SspDI GGCGCC 1 cut(s) 26
SspMI CTAG 2 cut(s) 351, 1329
SstI GAGCTC 1 cut(s) 453
StuI AGGCCT 1 cut(s) 691
StyD4I CCNGG 7 cut(s) 125, 238, 247, 394, 550, 919, 1417
StyI CCWWGG 2 cut(s) 900, 1328
TaaI ACNGT 2 cut(s) 1138, 1156
TaiI ACGT 2 cut(s) 94, 194
TaqI TCGA 3 cut(s) 5, 234, 1251
TasI AATT 8 cut(s) 370, 440, 492, 596, 755, 807, 1032, 1400
TauI GCSGC 2 cut(s) 56, 59
TfiI GAWTC 1 cut(s) 533
Tru1I TTAA 2 cut(s) 1095, 1305
Tru9I TTAA 2 cut(s) 1095, 1305
TscAI CASTG 2 cut(s) 67, 1269
TseFI GTSAC 1 cut(s) 1264
Tsp45I GTSAC 1 cut(s) 1264
TspDTI ATGAA 5 cut(s) 204, 734, 749, 861, 1214
TspRI CASTG 2 cut(s) 67, 1269
Tth111I GACNNNGTC 1 cut(s) 1270
Van91I CCANNNNNTGG 2 cut(s) 1034, 1418
VpaK11BI GGWCC 1 cut(s) 133
VspI ATTAAT 1 cut(s) 1095
XapI RAATTY 5 cut(s) 440, 492, 596, 755, 1400
XceI RCATGY 1 cut(s) 1380
XcmI CCANNNNNNNNNTGG 1 cut(s) 1415
XmaJI CCTAGG 1 cut(s) 1328
XmiI GTMKAC 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 2 cut(s) 351, 1329
ZraI GACGTC 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.