Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Forward (+)

78207231 .. 78207807

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00056450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGGGAGCCATCTCTTCACCTACGGCGCCGCCCAATCAGCTCCAGCTCCCACTCCTGCTCTCTCCACCGTCTACACCCCTCGCTCCCTAGCCCAATCCTACCTCTCCGACCCGACCCACCGCTACCTTTCCGGGTCGGACCCTCTCTCCACTTCCTCCATGTACCTCGCCGGCACCGACGGCCTCGGCGCTTACTCCGACGCCGCCAGAGCGACGTCGTATATGATGTCCTCCTGGCCCGCCCCCGATGCCGAACCCGGCCCGCCCGGCTTCAAACGCACCTCTGAAGGTATGTATGAAGTGGGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

103

Amino Acids

10.79

Weight (kDa)

5.0

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	218
AccB1I	GGYRCC	2 cut(s)	26, 173
AccI	GTMKAC	1 cut(s)	72
AciI	CCGC	5 cut(s)	30, 121, 204, 240, 263
AcuI	CTGAAG	1 cut(s)	306
AcyI	GRCGYC	3 cut(s)	27, 201, 215
AfaI	GTAC	1 cut(s)	164
AgsI	TTSAA	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	233
AluBI	AGCT	2 cut(s)	41, 47
AluI	AGCT	2 cut(s)	41, 47
AoxI	GGCC	3 cut(s)	181, 236, 259
AspLEI	GCGC	2 cut(s)	29, 191
AspS9I	GGNCC	3 cut(s)	139, 237, 260
AsuC2I	CCSGG	3 cut(s)	133, 258, 267
AsuHPI	GGTGA	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	139
BanI	GGYRCC	2 cut(s)	26, 173
BccI	CCATC	1 cut(s)	18
BceAI	ACGGC	2 cut(s)	40, 196
BciT130I	CCWGG	1 cut(s)	235
BcnI	CCSGG	3 cut(s)	133, 258, 267
BfaI	CTAG	1 cut(s)	89
BfoI	RGCGCY	2 cut(s)	30, 192
BglI	GCCNNNNNGGC	1 cut(s)	267
BisI	GCNGC	2 cut(s)	30, 204
BlsI	GCNGC	2 cut(s)	31, 205
Bme1390I	CCNGG	4 cut(s)	133, 235, 258, 267
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	3 cut(s)	139, 237, 260
BmiI	GGNNCC	4 cut(s)	8, 28, 141, 175
BmrFI	CCNGG	4 cut(s)	133, 235, 258, 267
BmsI	GCATC	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	27
BpuMI	CCSGG	3 cut(s)	133, 258, 267
BsaHI	GRCGYC	3 cut(s)	27, 201, 215
BsaJI	CCNNGG	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bse118I	RCCGGY	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	184
BshFI	GGCC	3 cut(s)	183, 238, 261
BshNI	GGYRCC	2 cut(s)	26, 173
BsiSI	CCGG	4 cut(s)	132, 171, 258, 267
BsnI	GGCC	3 cut(s)	183, 238, 261
BspACI	CCGC	5 cut(s)	30, 121, 204, 240, 263
BspANI	GGCC	3 cut(s)	183, 238, 261
BspLI	GGNNCC	4 cut(s)	8, 28, 141, 175
BspT107I	GGYRCC	2 cut(s)	26, 173
BsrFI	RCCGGY	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	184
BssNI	GRCGYC	3 cut(s)	27, 201, 215
Bst2UI	CCWGG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	1 cut(s)	20
BstACI	GRCGYC	3 cut(s)	27, 201, 215
BstC8I	GCNNGC	3 cut(s)	172, 240, 263
BstH2I	RGCGCY	2 cut(s)	30, 192
BstHHI	GCGC	2 cut(s)	29, 191
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 180, 209, 248, 267, 276
BstNI	CCWGG	1 cut(s)	235
BstSCI	CCNGG	4 cut(s)	131, 233, 256, 265
BsuRI	GGCC	3 cut(s)	183, 238, 261
Cac8I	GCNNGC	3 cut(s)	172, 240, 263
CfoI	GCGC	2 cut(s)	29, 191
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	139, 237, 260
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	8 cut(s)	9, 41, 47, 92, 183, 238, 261, 270
CviKI_1	RGCY	8 cut(s)	9, 41, 47, 92, 183, 238, 261, 270
CviQI	GTAC	1 cut(s)	163
DinI	GGCGCC	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	233
EgeI	GGCGCC	1 cut(s)	28
EheI	GGCGCC	1 cut(s)	28
FaeI	CATG	1 cut(s)	163
FaiI	YATR	6 cut(s)	161, 222, 224, 293, 297, 310
FatI	CATG	1 cut(s)	159
FauI	CCCGC	2 cut(s)	247, 270
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	30, 204
Fsp4HI	GCNGC	2 cut(s)	30, 204
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	2 cut(s)	28, 190
GluI	GCNGC	2 cut(s)	30, 204
GsuI	CTGGAG	1 cut(s)	27
HaeII	RGCGCY	2 cut(s)	30, 192
HaeIII	GGCC	3 cut(s)	183, 238, 261
HapII	CCGG	4 cut(s)	132, 171, 258, 267
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	2 cut(s)	29, 191
Hin1I	GRCGYC	3 cut(s)	27, 201, 215
Hin1II	CATG	1 cut(s)	163
Hin6I	GCGC	2 cut(s)	27, 189
HinP1I	GCGC	2 cut(s)	27, 189
HpaII	CCGG	4 cut(s)	132, 171, 258, 267
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	4 cut(s)	109, 139, 199, 286
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	4 cut(s)	182, 203, 217, 220
HpyAV	CCTTC	1 cut(s)	281
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 180, 209, 248, 267, 276
HpySE526I	ACGT	1 cut(s)	215
Hsp92I	GRCGYC	3 cut(s)	27, 201, 215
Hsp92II	CATG	1 cut(s)	163
HspAI	GCGC	2 cut(s)	27, 189
KasI	GGCGCC	1 cut(s)	26
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
LmnI	GCTCC	4 cut(s)	6, 46, 52, 89
LpnPI	CCDG	9 cut(s)	57, 69, 145, 184, 220, 220, 247, 271, 280
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	215
MboII	GAAGA	1 cut(s)	7
Mly113I	GGCGCC	1 cut(s)	27
MmeI	TCCRAC	3 cut(s)	117, 132, 222
MnlI	CCTC	8 cut(s)	90, 113, 153, 166, 176, 194, 241, 292
MroNI	GCCGGC	1 cut(s)	170
MspI	CCGG	4 cut(s)	132, 171, 258, 267
MspR9I	CCNGG	4 cut(s)	133, 235, 258, 267
MvaI	CCWGG	1 cut(s)	235
MwoI	GCNNNNNNNGC	6 cut(s)	38, 180, 209, 248, 267, 276
NaeI	GCCGGC	1 cut(s)	172
NarI	GGCGCC	1 cut(s)	27
NciI	CCSGG	3 cut(s)	133, 258, 267
NgoMIV	GCCGGC	1 cut(s)	170
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	4 cut(s)	8, 28, 141, 175
NmeAIII	GCCGAG	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PdiI	GCCGGC	1 cut(s)	172
PkrI	GCNGC	2 cut(s)	31, 205
PluTI	GGCGCC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	233
PspN4I	GGNNCC	4 cut(s)	8, 28, 141, 175
PspPI	GGNCC	3 cut(s)	139, 237, 260
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SatI	GCNGC	2 cut(s)	30, 204
Sau96I	GGNCC	3 cut(s)	139, 237, 260
ScrFI	CCNGG	4 cut(s)	133, 235, 258, 267
SetI	ASST	9 cut(s)	23, 43, 49, 105, 129, 168, 218, 284, 292
SfaNI	GCATC	1 cut(s)	238
SfoI	GGCGCC	1 cut(s)	28
SinI	GGWCC	1 cut(s)	139
SsiI	CCGC	5 cut(s)	30, 121, 204, 240, 263
SspDI	GGCGCC	1 cut(s)	26
SspMI	CTAG	1 cut(s)	89
StyD4I	CCNGG	4 cut(s)	131, 233, 256, 265
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	218
TauI	GCSGC	2 cut(s)	32, 206
TspDTI	ATGAA	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	1 cut(s)	89
ZraI	GACGTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.