RchiOBHm_Chr5g0022911

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
16929116 .. 16935290
6175 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30282

Sequence Viewer

Length: 1026 bp
ATGGCGAGCCATCTCTTCACCTACGGCGCGTCCCAATCAGCTCCAGCTCCCACTCCTGCTCTCTCCACCGTCTACACCCCCCGCTCCCTAGCGCAATCCTACCTCTCCGACCCGACCCACCGCTACCTTTCCGGGTCGGACCCTCTCTCCAATTCCTCCATGTACCTCGCCGGCACCGACGGCCTCGGCGCTTACTCCGACGCCGCCAGAGCGACGTCGTATATGATGTCCTCCTGGCCCGCCCCCGATGCCGAACTCGGCCCGCCCGGCTTCAAACGCACCTCTGAAGCACTCTACCATCAGGCTCTTTTGGGTGCCCATAATCCGATTGGGCAAATGGAAGCTTGGTATTCAACAAATTCTTTAGCAAAGCGACCTAGATTCGAGAATACAAGCTTGCCTATTTATCCACAGAGGCCAGGAGAGAAAGATTGTGTCCACTATATGCAAACAAGAACCTGTAAATTTGGAGAGTGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGATGGTGGAATCCAAGATTGGAAAGAGGTTCCACTTGTTGCTCCAAGTGAGTCCCTTCCCGAGAGACCTGGAGCGCCAGATTGTCCATACTTTTTAAAAACTCAAAGATGCAAGTTTGTTCTTAGATGCAAGTTTAATCATCCAAAGGACAAACTGGCCACTGCGGGCGCTTCAGAAAATGGTGATGTTTATGCCTTACCCGAGAGGCCTTCTGAACCTGCATGTGCATACTATATGAAGACTGGGGAATGTAAGTATGGTGCACAATGCAGATTCCATCATCCGATTGATAGGCCAGCAGTGGCGTTGTCAACAACAAAGCCATCTCAACAAGAAAATGTGAAGCTAACGCTTGCTGGACTTCCTAGGAGAGAGGGTGCCGTTATCTGTGTGTATTACCTTAAAACCGGCACATGCAAGTATGGTGCAACCTGCAGATTTGACCACCCACCTCCTGGGGAAGTTGTAGCAATGGCTGCTTCACAAGCAAAATCTGATTCTACTGGAGGAAAAGCATAA

Protein Analysis

341

Amino Acids

37.22

Weight (kDa)

8.47

Isoelectric Point (pI)

46.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 193 - 218 2.6e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 241 - 264 6.7e-11 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 297 - 320 2.9e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4 PF18345 299 - 318 6.8e-07 Zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 218
Acc36I ACCTGC 2 cut(s) 733, 947
AccB1I GGYRCC 3 cut(s) 173, 314, 884
AccB7I CCANNNNNTGG 1 cut(s) 962
AccBSI CCGCTC 1 cut(s) 84
AccI GTMKAC 1 cut(s) 72
AccII CGCG 1 cut(s) 29
AciI CCGC 6 cut(s) 82, 121, 204, 240, 263, 671
AcoI YGGCCR 1 cut(s) 663
AcsI RAATTY 2 cut(s) 358, 464
AcuI CTGAAG 2 cut(s) 306, 663
AcyI GRCGYC 2 cut(s) 201, 215
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 2 cut(s) 512, 962
AgsI TTSAA 2 cut(s) 274, 354
AjnI CCWGG 4 cut(s) 233, 418, 574, 961
AjuI GAANNNNNNNTTGG 2 cut(s) 508, 540
AluBI AGCT 5 cut(s) 41, 47, 344, 396, 853
AluI AGCT 5 cut(s) 41, 47, 344, 396, 853
Alw21I GWGCWC 1 cut(s) 772
Alw26I GTCTC 1 cut(s) 565
Alw44I GTGCAC 1 cut(s) 768
Ama87I CYCGRG 2 cut(s) 566, 707
AoxI GGCC 7 cut(s) 181, 236, 259, 416, 663, 713, 800
ApaLI GTGCAC 1 cut(s) 768
ApeKI GCWGC 2 cut(s) 477, 983
ApoI RAATTY 2 cut(s) 358, 464
AspA2I CCTAGG 1 cut(s) 872
AspLEI GCGC 5 cut(s) 29, 94, 191, 583, 677
AspS9I GGNCC 3 cut(s) 139, 237, 260
AsuC2I CCSGG 2 cut(s) 133, 267
AsuHPI GGTGA 2 cut(s) 10, 701
AvaI CYCGRG 2 cut(s) 566, 707
AvaII GGWCC 1 cut(s) 139
AvrII CCTAGG 1 cut(s) 872
BaeGI GKGCMC 2 cut(s) 319, 772
BalI TGGCCA 1 cut(s) 665
BanI GGYRCC 3 cut(s) 173, 314, 884
BbsI GAAGAC 1 cut(s) 752
Bbv12I GWGCWC 1 cut(s) 772
BbvI GCAGC 2 cut(s) 464, 970
BccI CCATC 6 cut(s) 18, 306, 498, 503, 792, 838
BceAI ACGGC 3 cut(s) 40, 196, 872
BciT130I CCWGG 4 cut(s) 235, 420, 576, 963
BcnI CCSGG 2 cut(s) 133, 267
BcoDI GTCTC 1 cut(s) 565
BfaI CTAG 3 cut(s) 89, 378, 873
BfmI CTRYAG 1 cut(s) 940
BfoI RGCGCY 3 cut(s) 192, 584, 678
BfuAI ACCTGC 2 cut(s) 733, 947
BglI GCCNNNNNGGC 1 cut(s) 267
BisI GCNGC 3 cut(s) 204, 478, 984
BlnI CCTAGG 1 cut(s) 872
BlsI GCNGC 3 cut(s) 205, 479, 985
Bme1390I CCNGG 6 cut(s) 133, 235, 267, 420, 576, 963
Bme18I GGWCC 1 cut(s) 139
BmeT110I CYCGRG 2 cut(s) 566, 707
BmgT120I GGNCC 3 cut(s) 139, 237, 260
BmiI GGNNCC 6 cut(s) 141, 175, 316, 504, 537, 886
BmrFI CCNGG 6 cut(s) 133, 235, 267, 420, 576, 963
BmrI ACTGGG 1 cut(s) 759
BmsI GCATC 3 cut(s) 238, 605, 623
BmuI ACTGGG 1 cut(s) 759
BpiI GAAGAC 1 cut(s) 752
BpmI CTGGAG 2 cut(s) 27, 597
BpuMI CCSGG 2 cut(s) 133, 267
BsaHI GRCGYC 2 cut(s) 201, 215
BsaI GGTCTC 1 cut(s) 565
BsaJI CCNNGG 3 cut(s) 184, 872, 962
BsaXI ACNNNNNCTCC 4 cut(s) 131, 161, 868, 898
Bsc4I CCNNNNNNNGG 2 cut(s) 512, 962
Bse118I RCCGGY 2 cut(s) 170, 914
Bse1I ACTGG 3 cut(s) 666, 754, 1015
Bse3DI GCAATG 1 cut(s) 984
BseBI CCWGG 4 cut(s) 235, 420, 576, 963
BseDI CCNNGG 3 cut(s) 184, 872, 962
BseGI GGATG 3 cut(s) 490, 646, 787
BseLI CCNNNNNNNGG 2 cut(s) 512, 962
BseMI GCAATG 1 cut(s) 984
BseNI ACTGG 3 cut(s) 666, 754, 1015
BseSI GKGCMC 2 cut(s) 319, 772
BseXI GCAGC 2 cut(s) 464, 970
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 7 cut(s) 183, 238, 261, 418, 665, 715, 802
BshNI GGYRCC 3 cut(s) 173, 314, 884
BsiHKAI GWGCWC 1 cut(s) 772
BsiHKCI CYCGRG 2 cut(s) 566, 707
BsiSI CCGG 4 cut(s) 132, 171, 267, 915
BslFI GGGAC 2 cut(s) 16, 544
BslI CCNNNNNNNGG 2 cut(s) 512, 962
BsmAI GTCTC 1 cut(s) 565
BsmFI GGGAC 2 cut(s) 16, 544
BsnI GGCC 7 cut(s) 183, 238, 261, 418, 665, 715, 802
Bso31I GGTCTC 1 cut(s) 565
BsoBI CYCGRG 2 cut(s) 566, 707
Bsp1286I GDGCHC 2 cut(s) 319, 772
BspACI CCGC 6 cut(s) 82, 121, 204, 240, 263, 671
BspANI GGCC 7 cut(s) 183, 238, 261, 418, 665, 715, 802
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 6 cut(s) 141, 175, 316, 504, 537, 886
BspMAI CTGCAG 1 cut(s) 944
BspMI ACCTGC 2 cut(s) 733, 947
BspT107I GGYRCC 3 cut(s) 173, 314, 884
BspTNI GGTCTC 1 cut(s) 565
BsrBI CCGCTC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 984
BsrFI RCCGGY 2 cut(s) 170, 914
BsrI ACTGG 3 cut(s) 666, 754, 1015
BssAI RCCGGY 2 cut(s) 170, 914
BssECI CCNNGG 3 cut(s) 184, 872, 962
BssNI GRCGYC 2 cut(s) 201, 215
BssT1I CCWWGG 1 cut(s) 872
Bst2UI CCWGG 4 cut(s) 235, 420, 576, 963
Bst4CI ACNGT 1 cut(s) 70
Bst6I CTCTTC 1 cut(s) 20
BstACI GRCGYC 2 cut(s) 201, 215
BstAPI GCANNNNNTGC 1 cut(s) 983
BstC8I GCNNGC 8 cut(s) 7, 172, 240, 263, 398, 673, 804, 861
BstDEI CTNAG 1 cut(s) 629
BstF5I GGATG 3 cut(s) 490, 646, 787
BstFNI CGCG 1 cut(s) 29
BstH2I RGCGCY 3 cut(s) 192, 584, 678
BstHHI GCGC 5 cut(s) 29, 94, 191, 583, 677
BstMAI GTCTC 1 cut(s) 565
BstMWI GCNNNNNNNGC 7 cut(s) 180, 209, 248, 267, 276, 983, 992
BstNI CCWGG 4 cut(s) 235, 420, 576, 963
BstNSI RCATGY 2 cut(s) 732, 924
BstSCI CCNGG 6 cut(s) 131, 233, 265, 418, 574, 961
BstSFI CTRYAG 1 cut(s) 940
BstSLI GKGCMC 2 cut(s) 319, 772
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 2 cut(s) 464, 970
BstV2I GAAGAC 1 cut(s) 752
BsuRI GGCC 7 cut(s) 183, 238, 261, 418, 665, 715, 802
BtsCI GGATG 3 cut(s) 490, 646, 787
BtsI GCAGTG 2 cut(s) 666, 813
BtsIMutI CAGTG 2 cut(s) 666, 813
BveI ACCTGC 2 cut(s) 733, 947
Cac8I GCNNGC 8 cut(s) 7, 172, 240, 263, 398, 673, 804, 861
CfoI GCGC 5 cut(s) 29, 94, 191, 583, 677
Cfr10I RCCGGY 2 cut(s) 170, 914
Cfr13I GGNCC 3 cut(s) 139, 237, 260
CseI GACGC 2 cut(s) 18, 209
Csp6I GTAC 1 cut(s) 163
CviAII CATG 3 cut(s) 160, 729, 921
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 1 cut(s) 629
DraI TTTAAA 1 cut(s) 603
EaeI YGGCCR 1 cut(s) 663
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 872
Eco147I AGGCCT 1 cut(s) 715
Eco31I GGTCTC 1 cut(s) 565
Eco47I GGWCC 1 cut(s) 139
Eco57I CTGAAG 2 cut(s) 306, 663
Eco88I CYCGRG 2 cut(s) 566, 707
EcoRII CCWGG 4 cut(s) 233, 418, 574, 961
EcoT14I CCWWGG 1 cut(s) 872
ErhI CCWWGG 1 cut(s) 872
FaeI CATG 3 cut(s) 163, 732, 924
FaqI GGGAC 2 cut(s) 16, 544
FatI CATG 3 cut(s) 159, 728, 920
FauI CCCGC 4 cut(s) 89, 247, 270, 664
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 3 cut(s) 204, 478, 984
FokI GGATG 3 cut(s) 477, 633, 774
Fsp4HI GCNGC 3 cut(s) 204, 478, 984
FspBI CTAG 3 cut(s) 89, 378, 873
GlaI GCGC 5 cut(s) 28, 93, 190, 582, 676
GluI GCNGC 3 cut(s) 204, 478, 984
GsuI CTGGAG 2 cut(s) 27, 597
HaeII RGCGCY 3 cut(s) 192, 584, 678
HaeIII GGCC 7 cut(s) 183, 238, 261, 418, 665, 715, 802
HapII CCGG 4 cut(s) 132, 171, 267, 915
HgaI GACGC 2 cut(s) 18, 209
HhaI GCGC 5 cut(s) 29, 94, 191, 583, 677
Hin1I GRCGYC 2 cut(s) 201, 215
Hin1II CATG 3 cut(s) 163, 732, 924
Hin6I GCGC 5 cut(s) 27, 92, 189, 581, 675
HinP1I GCGC 5 cut(s) 27, 92, 189, 581, 675
HincII GTYRAC 1 cut(s) 819
HindII GTYRAC 1 cut(s) 819
HindIII AAGCTT 2 cut(s) 342, 394
HinfI GANTC 5 cut(s) 381, 516, 557, 780, 1004
HpaII CCGG 4 cut(s) 132, 171, 267, 915
HphI GGTGA 2 cut(s) 10, 701
Hpy166II GTNNAC 4 cut(s) 73, 439, 770, 819
Hpy188I TCNGA 9 cut(s) 109, 139, 199, 286, 327, 682, 721, 792, 1003
Hpy188III TCNNGA 3 cut(s) 385, 506, 566
Hpy8I GTNNAC 4 cut(s) 73, 439, 770, 819
Hpy99I CGWCG 4 cut(s) 182, 203, 217, 220
HpyAV CCTTC 2 cut(s) 572, 726
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 7 cut(s) 180, 209, 248, 267, 276, 983, 992
HpyF3I CTNAG 1 cut(s) 629
HpySE526I ACGT 1 cut(s) 215
Hsp92I GRCGYC 2 cut(s) 201, 215
Hsp92II CATG 3 cut(s) 163, 732, 924
HspAI GCGC 5 cut(s) 27, 92, 189, 581, 675
KroI GCCGGC 1 cut(s) 170
KroNI GCCGGC 1 cut(s) 172
LmnI GCTCC 5 cut(s) 46, 52, 89, 553, 578
Lsp1109I GCAGC 2 cut(s) 464, 970
LweI GCATC 3 cut(s) 238, 605, 623
MaeI CTAG 3 cut(s) 89, 378, 873
MaeII ACGT 1 cut(s) 215
MbiI CCGCTC 1 cut(s) 84
MboII GAAGA 2 cut(s) 7, 757
MhlI GDGCHC 2 cut(s) 319, 772
MlsI TGGCCA 1 cut(s) 665
MluCI AATT 3 cut(s) 151, 358, 464
MluNI TGGCCA 1 cut(s) 665
MlyI GAGTC 1 cut(s) 566
MmeI TCCRAC 3 cut(s) 117, 132, 222
Mox20I TGGCCA 1 cut(s) 665
MroNI GCCGGC 1 cut(s) 170
MscI TGGCCA 1 cut(s) 665
MseI TTAA 3 cut(s) 602, 642, 909
Msp20I TGGCCA 1 cut(s) 665
MspI CCGG 4 cut(s) 132, 171, 267, 915
MspR9I CCNGG 6 cut(s) 133, 235, 267, 420, 576, 963
MvaI CCWGG 4 cut(s) 235, 420, 576, 963
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 7 cut(s) 180, 209, 248, 267, 276, 983, 992
NaeI GCCGGC 1 cut(s) 172
NciI CCSGG 2 cut(s) 133, 267
NgoMIV GCCGGC 1 cut(s) 170
NlaIII CATG 3 cut(s) 163, 732, 924
NlaIV GGNNCC 6 cut(s) 141, 175, 316, 504, 537, 886
NmeAIII GCCGAG 2 cut(s) 165, 237
NspI RCATGY 2 cut(s) 732, 924
PceI AGGCCT 1 cut(s) 715
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PdiI GCCGGC 1 cut(s) 172
PfeI GAWTC 4 cut(s) 381, 516, 780, 1004
PflMI CCANNNNNTGG 1 cut(s) 962
PkrI GCNGC 3 cut(s) 205, 479, 985
PleI GAGTC 1 cut(s) 565
PpsI GAGTC 1 cut(s) 565
Psp6I CCWGG 4 cut(s) 233, 418, 574, 961
PspGI CCWGG 4 cut(s) 233, 418, 574, 961
PspN4I GGNNCC 6 cut(s) 141, 175, 316, 504, 537, 886
PspPI GGNCC 3 cut(s) 139, 237, 260
PstI CTGCAG 1 cut(s) 944
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SaqAI TTAA 3 cut(s) 602, 642, 909
SatI GCNGC 3 cut(s) 204, 478, 984
Sau96I GGNCC 3 cut(s) 139, 237, 260
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 6 cut(s) 133, 235, 267, 420, 576, 963
SduI GDGCHC 2 cut(s) 319, 772
SfaNI GCATC 3 cut(s) 238, 605, 623
SfcI CTRYAG 1 cut(s) 940
SinI GGWCC 1 cut(s) 139
Sse9I AATT 3 cut(s) 151, 358, 464
SseBI AGGCCT 1 cut(s) 715
SsiI CCGC 6 cut(s) 82, 121, 204, 240, 263, 671
SspMI CTAG 3 cut(s) 89, 378, 873
StuI AGGCCT 1 cut(s) 715
StyD4I CCNGG 6 cut(s) 131, 233, 265, 418, 574, 961
StyI CCWWGG 1 cut(s) 872
TaaI ACNGT 1 cut(s) 70
TaiI ACGT 1 cut(s) 218
TaqI TCGA 1 cut(s) 384
TasI AATT 3 cut(s) 151, 358, 464
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 4 cut(s) 381, 516, 780, 1004
Tru1I TTAA 3 cut(s) 602, 642, 909
Tru9I TTAA 3 cut(s) 602, 642, 909
TscAI CASTG 2 cut(s) 673, 813
TseI GCWGC 2 cut(s) 477, 983
TspDTI ATGAA 1 cut(s) 758
TspRI CASTG 2 cut(s) 673, 813
Van91I CCANNNNNTGG 1 cut(s) 962
VneI GTGCAC 1 cut(s) 768
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 2 cut(s) 358, 464
XceI RCATGY 2 cut(s) 732, 924
XcmI CCANNNNNNNNNTGG 2 cut(s) 326, 959
XmaJI CCTAGG 1 cut(s) 872
XmiI GTMKAC 1 cut(s) 72
XspI CTAG 3 cut(s) 89, 378, 873
ZraI GACGTC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.