Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Reverse (-)

30062518 .. 30071715

Gene Structure 9198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1159100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1569 bp

ATGTTGCCAACGGGTGTTCTGCAACCGGTGTCATTTACAGAGTTGGTCGAAATTTATAGGTACTATCGATCCGGACTGCAATCGGAATTCCTTGAAGGCGTCGCCGTTCCCCTAAATCCCATTAACAACAACCGCGTCGATGATCAAAGTGGTCATCCACCGTCTATTCTGTCTCCTGCGCCGTCGGATCTCGATCCTGAAATCCTTGAATTGATTCGGACACTCGATCCCGCCGTGATCGAATGGATTAGGAATCCCGACCCTGCCTTCCTCGATGAGATTCGGAAGAGTCGGGAATTGAGTTTGAAGGAAAAGGAGGACAAAGAAGGGAAGGAGAGAGAGACTCAAGAAGAAACTAAGAAGGAGAGAGAGAGCGAAAAGAGCGAAAGCGGCAGCGGGGGAGGAGGGAATGGGAACGGTGGTGAGGTGGTGAAGGAGGTTGTTGAGGAGAGTAGCACAAGTAAACGCTCTCGTAGAAGGAAAAACAAGCTGATGAAGGTGTCCAAGGACAAGGCAATGCAGGGGGAAGAGTTGGCAGAGAAGCAAGACCAGACCGAAAGCAAGGAAATAATTGTTGGCGACTTTGTGTTGGAGGTGTCTAACGACAAGGCAAAGCCGAGGGAAGGGTTGGCAGAAAAGCAAGACCAGACCGAAAACAAGGTGTCTAAGGACAAGGCTAAGCAGCGGGAAGAGTTGGTAGAGAAGCAAGTCCAGACCGAAAGCAAGGTGACTAAGGACAAGGCAAAGCAGAGGGAAGAGTTGGCAGTGAAGCAAGACCAGACCGAAAGCAAGGTGTCTAAGGAGAAAGCAAAGCAGAGGGAGGAGTTTGCAGAGAAGCAAGACCAGACCAAAATCAAGGTGTCGAAGGACAAGGCAAAGCAGACAGAAGAGTTGGCAGAGAAGCAAGACCAGACCGAAAGCAAGAAGCTGTCTAAGGACAAGGCAAAGCAGAAGGAAGAGTTGGCAGAGAATCAAGACCATACCGAAAGCAAGATGAAGGTGTCTAAGGACAAGGCAAAGCAGAGGGAAGAGTTGGCAGAGAAGCAAGACCAGACCGAAAGCAAGGTGTCTAAGGACAAGGCAAAGCAGAGGGGAGAGTTGGCAGAGAAGCAAGGCCAGACCAAAAACAAGGTGTCTAAGGACAAGTCAAAGCAGAGAGGAGAGTTGGCAGAGGAGCAAGGCCAAACCAAAAACAAGGCGTCTAAGGACAAGGCAAAGCAGAGGGGAGAGTTGGCAGAGAAGCAAGGCCAAACCAAAAACAAGTATTGCCCTGGACAATGTAAAGGGGAACCCTCTGTAGCTCCTGCTCTGGAACTTAACTTTTTGGGCCTGCCAATTCGTCCGGGGAAGGCAGATTGTTTGCACTATATGCAAACTGGCACTTGCAAGTATGAAAACAACTGCTTGTTTAATCACCCTGATCCTACACCTTTAGAAGAATCTCGCCCACAATCCACTTATGAATCTCATGGGATTCATTCCGAAACTGCAGAATGGAATGATGTCATCACTCCGTATGCTGAAACTGCAGAATGGAAGGTTGTCATCACTCAGTATGGCTGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH zf-CCCH_2

Protein Analysis

523

Amino Acids

59.16

Weight (kDa)

6.03

Isoelectric Point (pI)

53.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	449 - 473	1.6e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	135
AccIII	TCCGGA	1 cut(s)	71
AciI	CCGC	5 cut(s)	133, 231, 390, 396, 685
AclWI	GGATC	5 cut(s)	63, 188, 195, 221, 1415
AcsI	RAATTY	2 cut(s)	51, 86
AcyI	GRCGYC	2 cut(s)	99, 1199
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	623
AgeI	ACCGGT	1 cut(s)	25
AgsI	TTSAA	3 cut(s)	95, 209, 307
AjnI	CCWGG	1 cut(s)	1270
AjuI	GAANNNNNNNTTGG	4 cut(s)	558, 590, 944, 976
AluBI	AGCT	3 cut(s)	490, 928, 1301
AluI	AGCT	3 cut(s)	490, 928, 1301
Alw26I	GTCTC	2 cut(s)	177, 335
AlwI	GGATC	5 cut(s)	63, 188, 195, 221, 1415
Aor13HI	TCCGGA	1 cut(s)	71
AoxI	GGCC	4 cut(s)	1114, 1180, 1246, 1327
ApeKI	GCWGC	2 cut(s)	393, 682
ApoI	RAATTY	2 cut(s)	51, 86
AsiGI	ACCGGT	1 cut(s)	25
Asp700I	GAANNNNTTC	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	1327
AsuC2I	CCSGG	1 cut(s)	1344
AsuHPI	GGTGA	4 cut(s)	434, 442, 739, 1406
BbvI	GCAGC	2 cut(s)	405, 694
BceAI	ACGGC	3 cut(s)	89, 166, 218
BciT130I	CCWGG	1 cut(s)	1272
BclI	TGATCA	1 cut(s)	142
BcnI	CCSGG	1 cut(s)	1344
BcoDI	GTCTC	2 cut(s)	177, 335
BfmI	CTRYAG	3 cut(s)	1296, 1488, 1527
BisI	GCNGC	3 cut(s)	391, 394, 683
BlpI	GCTNAGC	1 cut(s)	678
BlsI	GCNGC	3 cut(s)	392, 395, 684
Bme1390I	CCNGG	2 cut(s)	1272, 1344
BmgT120I	GGNCC	1 cut(s)	1327
BmiI	GGNNCC	1 cut(s)	1290
BmrFI	CCNGG	2 cut(s)	1272, 1344
BplI	GAGNNNNNCTC	2 cut(s)	328, 360
Bpu1102I	GCTNAGC	1 cut(s)	678
BpuEI	CTTGAG	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	1344
Bsa29I	ATCGAT	1 cut(s)	67
BsaBI	GATNNNNATC	1 cut(s)	192
BsaHI	GRCGYC	2 cut(s)	99, 1199
BsaJI	CCNNGG	4 cut(s)	504, 617, 1270, 1343
BsaWI	WCCGGW	2 cut(s)	25, 71
Bsc4I	CCNNNNNNNGG	1 cut(s)	623
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	1381
Bse3DI	GCAATG	1 cut(s)	522
Bse8I	GATNNNNATC	1 cut(s)	192
BseAI	TCCGGA	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	1272
BseCI	ATCGAT	1 cut(s)	67
BseDI	CCNNGG	4 cut(s)	504, 617, 1270, 1343
BseGI	GGATG	1 cut(s)	154
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	623
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	1 cut(s)	1565
BseNI	ACTGG	1 cut(s)	1381
BseRI	GAGGAG	5 cut(s)	417, 461, 836, 1173, 1187
BseXI	GCAGC	2 cut(s)	405, 694
BseYI	CCCAGC	1 cut(s)	1560
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	4 cut(s)	1116, 1182, 1248, 1329
BshTI	ACCGGT	1 cut(s)	25
BshVI	ATCGAT	1 cut(s)	67
BsiSI	CCGG	3 cut(s)	26, 72, 1343
BslI	CCNNNNNNNGG	1 cut(s)	623
BsmAI	GTCTC	2 cut(s)	177, 335
BsnI	GGCC	4 cut(s)	1116, 1182, 1248, 1329
Bsp13I	TCCGGA	1 cut(s)	71
Bsp143I	GATC	7 cut(s)	68, 142, 187, 193, 226, 237, 1420
Bsp1720I	GCTNAGC	1 cut(s)	678
BspACI	CCGC	5 cut(s)	133, 231, 390, 396, 685
BspANI	GGCC	4 cut(s)	1116, 1182, 1248, 1329
BspCNI	CTCAG	1 cut(s)	1564
BspDI	ATCGAT	1 cut(s)	67
BspEI	TCCGGA	1 cut(s)	71
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	1290
BspMAI	CTGCAG	2 cut(s)	1492, 1531
BspPI	GGATC	5 cut(s)	63, 188, 195, 221, 1415
BsrDI	GCAATG	1 cut(s)	522
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	1381
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	4 cut(s)	504, 617, 1270, 1343
BssMI	GATC	7 cut(s)	68, 142, 187, 193, 226, 237, 1420
BssNI	GRCGYC	2 cut(s)	99, 1199
BssT1I	CCWWGG	1 cut(s)	504
Bst2UI	CCWGG	1 cut(s)	1272
Bst4CI	ACNGT	2 cut(s)	162, 419
Bst6I	CTCTTC	7 cut(s)	281, 522, 684, 750, 882, 951, 1023
BstACI	GRCGYC	2 cut(s)	99, 1199
BstAPI	GCANNNNNTGC	1 cut(s)	1369
BstC8I	GCNNGC	1 cut(s)	1331
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	7 cut(s)	71, 145, 190, 196, 229, 240, 1423
BstMAI	GTCTC	2 cut(s)	177, 335
BstMBI	GATC	7 cut(s)	68, 142, 187, 193, 226, 237, 1420
BstMWI	GCNNNNNNNGC	4 cut(s)	381, 390, 1369, 1526
BstNI	CCWGG	1 cut(s)	1272
BstSCI	CCNGG	2 cut(s)	1270, 1342
BstSFI	CTRYAG	3 cut(s)	1296, 1488, 1527
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	2 cut(s)	405, 694
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
Bsu15I	ATCGAT	1 cut(s)	67
BsuRI	GGCC	4 cut(s)	1116, 1182, 1248, 1329
BsuTUI	ATCGAT	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	771
BtsIMutI	CAGTG	1 cut(s)	771
Cac8I	GCNNGC	1 cut(s)	1331
CfoI	GCGC	1 cut(s)	181
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	1327
ClaI	ATCGAT	1 cut(s)	67
CseI	GACGC	3 cut(s)	88, 124, 1188
Csp6I	GTAC	1 cut(s)	61
CspAI	ACCGGT	1 cut(s)	25
CviAII	CATG	1 cut(s)	1469
CviQI	GTAC	1 cut(s)	61
DpnI	GATC	7 cut(s)	70, 144, 189, 195, 228, 239, 1422
DpnII	GATC	7 cut(s)	68, 142, 187, 193, 226, 237, 1420
Eam1104I	CTCTTC	7 cut(s)	281, 522, 684, 750, 882, 951, 1023
EarI	CTCTTC	7 cut(s)	281, 522, 684, 750, 882, 951, 1023
Eco130I	CCWWGG	1 cut(s)	504
EcoRI	GAATTC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	1270
EcoT14I	CCWWGG	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	1 cut(s)	1472
FaiI	YATR	9 cut(s)	57, 981, 1368, 1370, 1392, 1461, 1470, 1518, 1557
FatI	CATG	1 cut(s)	1468
FauI	CCCGC	3 cut(s)	238, 389, 678
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	3 cut(s)	391, 394, 683
FokI	GGATG	1 cut(s)	141
Fsp4HI	GCNGC	3 cut(s)	391, 394, 683
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	3 cut(s)	391, 394, 683
GsaI	CCCAGC	1 cut(s)	1564
HaeIII	GGCC	4 cut(s)	1116, 1182, 1248, 1329
HapII	CCGG	3 cut(s)	26, 72, 1343
HgaI	GACGC	3 cut(s)	88, 124, 1188
HhaI	GCGC	1 cut(s)	181
Hin1I	GRCGYC	2 cut(s)	99, 1199
Hin1II	CATG	1 cut(s)	1472
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HinfI	GANTC	9 cut(s)	214, 253, 280, 289, 343, 970, 1439, 1463, 1474
HpaII	CCGG	3 cut(s)	26, 72, 1343
HphI	GGTGA	4 cut(s)	434, 442, 739, 1406
Hpy166II	GTNNAC	1 cut(s)	464
Hpy188I	TCNGA	5 cut(s)	85, 187, 219, 285, 1483
Hpy188III	TCNNGA	9 cut(s)	72, 191, 197, 257, 293, 347, 712, 974, 1310
Hpy8I	GTNNAC	1 cut(s)	464
Hpy99I	CGWCG	3 cut(s)	104, 140, 187
HpyCH4III	ACNGT	2 cut(s)	162, 419
HpyCH4V	TGCA	9 cut(s)	22, 79, 520, 830, 1363, 1372, 1386, 1490, 1529
HpyF10VI	GCNNNNNNNGC	4 cut(s)	381, 390, 1369, 1526
Hsp92I	GRCGYC	2 cut(s)	99, 1199
Hsp92II	CATG	1 cut(s)	1472
HspAI	GCGC	1 cut(s)	179
Kpn2I	TCCGGA	1 cut(s)	71
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	7 cut(s)	68, 142, 187, 193, 226, 237, 1420
LmnI	GCTCC	2 cut(s)	1174, 1306
Lsp1109I	GCAGC	2 cut(s)	405, 694
MaeIII	GTNAC	1 cut(s)	727
MalI	GATC	7 cut(s)	70, 144, 189, 195, 228, 239, 1422
MboI	GATC	7 cut(s)	68, 142, 187, 193, 226, 237, 1420
MboII	GAAGA	9 cut(s)	298, 362, 539, 701, 767, 899, 968, 1040, 1448
MflI	RGATCY	1 cut(s)	187
MluCI	AATT	6 cut(s)	51, 86, 209, 296, 570, 1335
MlyI	GAGTC	2 cut(s)	298, 337
MmeI	TCCRAC	2 cut(s)	165, 570
MroI	TCCGGA	1 cut(s)	71
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	3 cut(s)	123, 1317, 1410
MspA1I	CMGCKG	2 cut(s)	396, 685
MspI	CCGG	3 cut(s)	26, 72, 1343
MspR9I	CCNGG	2 cut(s)	1272, 1344
MvaI	CCWGG	1 cut(s)	1272
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	4 cut(s)	381, 390, 1369, 1526
NciI	CCSGG	1 cut(s)	1344
NdeII	GATC	7 cut(s)	68, 142, 187, 193, 226, 237, 1420
NlaIII	CATG	1 cut(s)	1472
NlaIV	GGNNCC	1 cut(s)	1290
NmeAIII	GCCGAG	1 cut(s)	642
NmuCI	GTSAC	1 cut(s)	727
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	7 cut(s)	214, 253, 280, 970, 1439, 1463, 1474
PinAI	ACCGGT	1 cut(s)	25
PkrI	GCNGC	3 cut(s)	392, 395, 684
PleI	GAGTC	2 cut(s)	297, 337
PpsI	GAGTC	2 cut(s)	297, 337
Psp6I	CCWGG	1 cut(s)	1270
PspFI	CCCAGC	1 cut(s)	1560
PspGI	CCWGG	1 cut(s)	1270
PspN4I	GGNNCC	1 cut(s)	1290
PspPI	GGNCC	1 cut(s)	1327
PstI	CTGCAG	2 cut(s)	1492, 1531
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SaqAI	TTAA	3 cut(s)	123, 1317, 1410
SatI	GCNGC	3 cut(s)	391, 394, 683
Sau3AI	GATC	7 cut(s)	68, 142, 187, 193, 226, 237, 1420
Sau96I	GGNCC	1 cut(s)	1327
SchI	GAGTC	2 cut(s)	298, 337
ScrFI	CCNGG	2 cut(s)	1272, 1344
SfcI	CTRYAG	3 cut(s)	1296, 1488, 1527
SmlI	CTYRAG	1 cut(s)	345
SmoI	CTYRAG	1 cut(s)	345
Sse9I	AATT	6 cut(s)	51, 86, 209, 296, 570, 1335
SsiI	CCGC	5 cut(s)	133, 231, 390, 396, 685
StyD4I	CCNGG	2 cut(s)	1270, 1342
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	2 cut(s)	162, 419
TaqI	TCGA	8 cut(s)	48, 67, 138, 192, 225, 240, 273, 863
TaqII	GACCGA	6 cut(s)	569, 665, 731, 797, 929, 1070
TasI	AATT	6 cut(s)	51, 86, 209, 296, 570, 1335
TauI	GCSGC	1 cut(s)	393
TfiI	GAWTC	7 cut(s)	214, 253, 280, 970, 1439, 1463, 1474
Tru1I	TTAA	3 cut(s)	123, 1317, 1410
Tru9I	TTAA	3 cut(s)	123, 1317, 1410
TscAI	CASTG	1 cut(s)	771
TseFI	GTSAC	1 cut(s)	727
TseI	GCWGC	2 cut(s)	393, 682
Tsp45I	GTSAC	1 cut(s)	727
TspDTI	ATGAA	5 cut(s)	509, 1010, 1407, 1466, 1476
TspGWI	ACGGA	1 cut(s)	1503
TspRI	CASTG	1 cut(s)	771
XapI	RAATTY	2 cut(s)	51, 86
XmnI	GAANNNNTTC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.