Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Reverse (-)

30054989 .. 30060425

Gene Structure 5437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1158900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGTTGCCAACGGCGCGTGTTCTGCTACCGGTGTCATTTACAGTGTTGGTCGAAATTTATAGGTACTTTCGATCCGGACGGCAATCGGAACTCCCTCAAGGCGTCGCCTTTCGCCTAAATCCCATCGATGATCAAAGTGGTCATCCACCGTCTATTCCGTCTCATGCGCCGTCCGATCTCGATCCTGAAATCCTTGAATTGATTCGGACACTCGACCCCGCCGTGATCGAATGGATTAGGAATCTCGACCCTGCTTTCCTCGATGAGATTCGGAAGATTCAGGAATTGAGTTTGAAGGAAAAGAAGGAAAAAGAAAAAGGGAAGGAGAGAGAGACTCAAGAGGAAACTGAGAAGGAGAGAGAGAGCGAAAGCGGCAGCGGAGGAGGAGGGAATGAGAACGGTGGTGAGGTGGTGAAGGAGGTTGTTGAGGAGAGTAGCACAAGGAATCACCCTCGGAGAAGGGAAAACAAGCAGATGATGGTGTCCAAGGACAAGGCAATGCAGGAGGAAGAGTTGGCAGAGAAGCAAGACCAGACCAAAAGCAGGGAAATATTTGTTGGTGAGGTGTCTGAGGACAAGGCAAAGCGGAGGGAAGAGTTGGCAGAAAAGCAAGACCAGACCGAAAACAAGGTGTCTAAGGACAAGGCAAAGCAGCGCGAAGAGTTGGTAGAGAACCAAGTCCAGACCGAAAGCAAGGTGTCTAAGGACAAGGCAAAGCAGAGGGAAGAGTTGGCAGTGAAGCAAGACCAGACCGAAAGCAAGGTGTTTAAGGACAAGGCAAAGCAGAGGGGAGAGTTGGCAGAGAAGCAAGACCAGACCAGAAACAAGTATTGCCCAGGACGATGTAAAAGGGAACCCTCTGTAGCTCCAGCTCTGAAACTTAACTTTTTGGGCCTGCCAATTCGTCCGGGGAAGAAAGATTGTTTGCACTATATGCGAACTGGCACTTGCCAGTATGAAAACAGGTGCTTGTATAATCATCCTGATCCTACACCTGCAGAAGAATCTTGCCCACAATCCGCTTATGAATCGCATGGGATTCATTCCGAAACTACAGAATGGAATGATGTCATCACTCTGGTATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

KH_1 zf-CCCH

Protein Analysis

363

Amino Acids

41.49

Weight (kDa)

5.67

Isoelectric Point (pI)

62.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	304 - 328	6e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1003
Acc36I	ACCTGC	1 cut(s)	1003
AccII	CGCG	2 cut(s)	16, 657
AccIII	TCCGGA	1 cut(s)	74
AciI	CCGC	5 cut(s)	219, 372, 378, 586, 1020
AclWI	GGATC	3 cut(s)	66, 176, 980
AcsI	RAATTY	1 cut(s)	54
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	543
AgeI	ACCGGT	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	197, 295
AjnI	CCWGG	1 cut(s)	835
AjuI	GAANNNNNNNTTGG	2 cut(s)	540, 572
AluBI	AGCT	2 cut(s)	866, 872
AluI	AGCT	2 cut(s)	866, 872
Alw26I	GTCTC	2 cut(s)	165, 326
AlwI	GGATC	3 cut(s)	66, 176, 980
Aor13HI	TCCGGA	1 cut(s)	74
AoxI	GGCC	1 cut(s)	892
ApeKI	GCWGC	2 cut(s)	375, 652
ApoI	RAATTY	1 cut(s)	54
AsiGI	ACCGGT	1 cut(s)	28
Asp700I	GAANNNNTTC	1 cut(s)	201
AspLEI	GCGC	3 cut(s)	16, 169, 657
AspS9I	GGNCC	1 cut(s)	892
AsuC2I	CCSGG	1 cut(s)	909
AsuHPI	GGTGA	4 cut(s)	416, 424, 440, 572
BbvI	GCAGC	2 cut(s)	387, 664
BccI	CCATC	2 cut(s)	131, 472
BceAI	ACGGC	4 cut(s)	27, 95, 154, 206
BciT130I	CCWGG	1 cut(s)	837
BclI	TGATCA	1 cut(s)	130
BcnI	CCSGG	1 cut(s)	909
BcoDI	GTCTC	2 cut(s)	165, 326
BfmI	CTRYAG	3 cut(s)	861, 996, 1053
BfuAI	ACCTGC	1 cut(s)	1003
BisI	GCNGC	3 cut(s)	373, 376, 653
BlsI	GCNGC	3 cut(s)	374, 377, 654
Bme1390I	CCNGG	2 cut(s)	837, 909
BmgT120I	GGNCC	1 cut(s)	892
BmiI	GGNNCC	1 cut(s)	855
BmrFI	CCNGG	2 cut(s)	837, 909
BplI	GAGNNNNNCTC	2 cut(s)	319, 351
BpmI	CTGGAG	1 cut(s)	852
BpuEI	CTTGAG	2 cut(s)	81, 321
BpuMI	CCSGG	1 cut(s)	909
Bsa29I	ATCGAT	1 cut(s)	126
BsaBI	GATNNNNATC	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	4 cut(s)	452, 486, 835, 908
BsaWI	WCCGGW	2 cut(s)	28, 74
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bsc4I	CCNNNNNNNGG	1 cut(s)	543
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	2 cut(s)	946, 952
Bse3DI	GCAATG	1 cut(s)	504
Bse8I	GATNNNNATC	1 cut(s)	180
BseAI	TCCGGA	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	837
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	4 cut(s)	452, 486, 835, 908
BseGI	GGATG	2 cut(s)	142, 979
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	543
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	2 cut(s)	339, 561
BseNI	ACTGG	2 cut(s)	946, 952
BseRI	GAGGAG	3 cut(s)	396, 399, 443
BseXI	GCAGC	2 cut(s)	387, 664
Bsh1236I	CGCG	2 cut(s)	16, 657
BshFI	GGCC	1 cut(s)	894
BshTI	ACCGGT	1 cut(s)	28
BshVI	ATCGAT	1 cut(s)	126
BsiSI	CCGG	3 cut(s)	29, 75, 908
BslI	CCNNNNNNNGG	1 cut(s)	543
BsmAI	GTCTC	2 cut(s)	165, 326
BsmBI	CGTCTC	1 cut(s)	165
BsnI	GGCC	1 cut(s)	894
Bsp13I	TCCGGA	1 cut(s)	74
Bsp143I	GATC	6 cut(s)	71, 130, 175, 181, 225, 985
BspACI	CCGC	5 cut(s)	219, 372, 378, 586, 1020
BspANI	GGCC	1 cut(s)	894
BspCNI	CTCAG	2 cut(s)	340, 562
BspDI	ATCGAT	1 cut(s)	126
BspEI	TCCGGA	1 cut(s)	74
BspFNI	CGCG	2 cut(s)	16, 657
BspLI	GGNNCC	1 cut(s)	855
BspMAI	CTGCAG	1 cut(s)	1000
BspMI	ACCTGC	1 cut(s)	1003
BspPI	GGATC	3 cut(s)	66, 176, 980
BsrDI	GCAATG	1 cut(s)	504
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	2 cut(s)	946, 952
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	4 cut(s)	452, 486, 835, 908
BssMI	GATC	6 cut(s)	71, 130, 175, 181, 225, 985
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	837
Bst4CI	ACNGT	3 cut(s)	43, 150, 401
Bst6I	CTCTTC	4 cut(s)	504, 588, 654, 720
BstACI	GRCGYC	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	934
BstC8I	GCNNGC	1 cut(s)	896
BstDEI	CTNAG	4 cut(s)	348, 570, 636, 702
BstF5I	GGATG	2 cut(s)	142, 979
BstFNI	CGCG	2 cut(s)	16, 657
BstHHI	GCGC	3 cut(s)	16, 169, 657
BstKTI	GATC	6 cut(s)	74, 133, 178, 184, 228, 988
BstMAI	GTCTC	2 cut(s)	165, 326
BstMBI	GATC	6 cut(s)	71, 130, 175, 181, 225, 985
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 22, 372, 934
BstNI	CCWGG	1 cut(s)	837
BstSCI	CCNGG	2 cut(s)	835, 907
BstSFI	CTRYAG	3 cut(s)	861, 996, 1053
BstUI	CGCG	2 cut(s)	16, 657
BstV1I	GCAGC	2 cut(s)	387, 664
Bsu15I	ATCGAT	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	894
BsuTUI	ATCGAT	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	142, 979
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	2 cut(s)	48, 741
BveI	ACCTGC	1 cut(s)	1003
Cac8I	GCNNGC	1 cut(s)	896
CfoI	GCGC	3 cut(s)	16, 169, 657
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	892
ClaI	ATCGAT	1 cut(s)	126
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	64
CspAI	ACCGGT	1 cut(s)	28
CviAII	CATG	2 cut(s)	164, 1034
CviJI	RGCY	3 cut(s)	866, 872, 894
CviKI_1	RGCY	3 cut(s)	866, 872, 894
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	4 cut(s)	348, 570, 636, 702
DpnI	GATC	6 cut(s)	73, 132, 177, 183, 227, 987
DpnII	GATC	6 cut(s)	71, 130, 175, 181, 225, 985
Eam1104I	CTCTTC	4 cut(s)	504, 588, 654, 720
EarI	CTCTTC	4 cut(s)	504, 588, 654, 720
Eco130I	CCWWGG	1 cut(s)	486
EcoRII	CCWGG	1 cut(s)	835
EcoT14I	CCWWGG	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	486
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	2 cut(s)	167, 1037
FaiI	YATR	9 cut(s)	60, 165, 933, 935, 957, 975, 1026, 1035, 1087
FatI	CATG	2 cut(s)	163, 1033
FauI	CCCGC	1 cut(s)	226
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	3 cut(s)	373, 376, 653
FokI	GGATG	2 cut(s)	129, 966
Fsp4HI	GCNGC	3 cut(s)	373, 376, 653
GlaI	GCGC	3 cut(s)	15, 168, 656
GluI	GCNGC	3 cut(s)	373, 376, 653
GsuI	CTGGAG	1 cut(s)	852
HaeIII	GGCC	1 cut(s)	894
HapII	CCGG	3 cut(s)	29, 75, 908
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	3 cut(s)	16, 169, 657
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	2 cut(s)	167, 1037
Hin6I	GCGC	3 cut(s)	14, 167, 655
HinP1I	GCGC	3 cut(s)	14, 167, 655
HinfI	GANTC	9 cut(s)	202, 241, 268, 277, 334, 445, 1004, 1028, 1039
HpaII	CCGG	3 cut(s)	29, 75, 908
HphI	GGTGA	4 cut(s)	416, 424, 440, 572
Hpy188I	TCNGA	8 cut(s)	88, 175, 207, 273, 456, 571, 876, 1048
Hpy188III	TCNNGA	8 cut(s)	75, 179, 185, 245, 281, 338, 682, 983
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	6 cut(s)	289, 298, 316, 346, 409, 453
HpyCH4III	ACNGT	3 cut(s)	43, 150, 401
HpyCH4V	TGCA	3 cut(s)	502, 928, 998
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 22, 372, 934
HpyF3I	CTNAG	4 cut(s)	348, 570, 636, 702
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	167, 1037
HspAI	GCGC	3 cut(s)	14, 167, 655
Kpn2I	TCCGGA	1 cut(s)	74
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	6 cut(s)	71, 130, 175, 181, 225, 985
LmnI	GCTCC	1 cut(s)	871
Lsp1109I	GCAGC	2 cut(s)	387, 664
MalI	GATC	6 cut(s)	73, 132, 177, 183, 227, 987
MboI	GATC	6 cut(s)	71, 130, 175, 181, 225, 985
MboII	GAAGA	7 cut(s)	286, 521, 605, 671, 737, 925, 1013
MluCI	AATT	4 cut(s)	54, 197, 284, 900
MlyI	GAGTC	1 cut(s)	328
MroI	TCCGGA	1 cut(s)	74
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	2 cut(s)	768, 882
MspA1I	CMGCKG	1 cut(s)	378
MspI	CCGG	3 cut(s)	29, 75, 908
MspR9I	CCNGG	2 cut(s)	837, 909
MvaI	CCWGG	1 cut(s)	837
MvnI	CGCG	2 cut(s)	16, 657
MwoI	GCNNNNNNNGC	4 cut(s)	13, 22, 372, 934
NciI	CCSGG	1 cut(s)	909
NdeII	GATC	6 cut(s)	71, 130, 175, 181, 225, 985
NlaIII	CATG	2 cut(s)	167, 1037
NlaIV	GGNNCC	1 cut(s)	855
PaqCI	CACCTGC	1 cut(s)	1003
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	8 cut(s)	202, 241, 268, 277, 445, 1004, 1028, 1039
PinAI	ACCGGT	1 cut(s)	28
PkrI	GCNGC	3 cut(s)	374, 377, 654
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	835
PspGI	CCWGG	1 cut(s)	835
PspN4I	GGNNCC	1 cut(s)	855
PspPI	GGNCC	1 cut(s)	892
PstI	CTGCAG	1 cut(s)	1000
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	768, 882
SatI	GCNGC	3 cut(s)	373, 376, 653
Sau3AI	GATC	6 cut(s)	71, 130, 175, 181, 225, 985
Sau96I	GGNCC	1 cut(s)	892
SchI	GAGTC	1 cut(s)	328
ScrFI	CCNGG	2 cut(s)	837, 909
SfcI	CTRYAG	3 cut(s)	861, 996, 1053
SmlI	CTYRAG	2 cut(s)	96, 336
SmoI	CTYRAG	2 cut(s)	96, 336
Sse9I	AATT	4 cut(s)	54, 197, 284, 900
SsiI	CCGC	5 cut(s)	219, 372, 378, 586, 1020
SspI	AATATT	1 cut(s)	552
StyD4I	CCNGG	2 cut(s)	835, 907
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	3 cut(s)	43, 150, 401
TaqI	TCGA	8 cut(s)	51, 70, 126, 180, 213, 228, 246, 261
TaqII	GACCGA	3 cut(s)	635, 701, 767
TasI	AATT	4 cut(s)	54, 197, 284, 900
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	8 cut(s)	202, 241, 268, 277, 445, 1004, 1028, 1039
Tru1I	TTAA	2 cut(s)	768, 882
Tru9I	TTAA	2 cut(s)	768, 882
TscAI	CASTG	2 cut(s)	48, 741
TseI	GCWGC	2 cut(s)	375, 652
TspDTI	ATGAA	3 cut(s)	972, 1031, 1041
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	2 cut(s)	48, 741
XapI	RAATTY	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.