Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Forward (+)

31716273 .. 31722462

Gene Structure 6190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1219700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGTCCAGCCATCTCTACGGCTTCGGCGCTGCTGCTCAATCAGCTACTTCTGCCGCCACCGCCGCCGCCCTCTCCTCCGTCTACTCCTCCCGCGCCCTAACCGACTCCTACCTATCCGACCCCGCCCTCCGCTACTATTCCGGGTCCGACCCTTTCGCCGACCACCACACCCGAGCTAGCTCCATGTATCTTCCGCCGCATTTGATTCCCCATTCCGCATGGCCAGCTCCAGATGTCGAGCCCGGCGTCCCCGGCGTCAAACGCCCCTCCGAAGCACTCTACCATCAGAGTTATATGGGTGCCTATAATACGATTGGGCAAGAAGCTTGGTATGCTGCGTTAGCCAAGCGCCCTAGATACGAGGGTGCAAGCACTTTGCCTATATATCCACAGAGGCCAGGAGAGAAGGATTGTGCCCATTATATGCTCACAAGAACCTGTAAATTTGGAGAGAGCTGCAAATTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCACTTGTTGCTCCAACTGAAGTCCTTCCTGAGAGACCAGGAGCACCAGATTGTCCTTACTTTATAAAGACTCAAAGATGCAAATTTGGTATGAGGTGCAAGTTTAATCATCCGAAGGACAAAGTGATTGCTTCTGATGCTTCAGAAAATGCTGATGTTTTTACCTTACCTGAGAGGCCATCTGAACCCCCATGCGCATTCTACTTGAAAACTGGGCAATGTAAATTTGGTGTGACCTGCAAATTTCATCACCCGAAAGATATCCAAATACCATTAGCTAACCAAGAGAACAAAGCTGGAGAAACCGGGACGGCTATCAAGACGGATGGAACTGGATTTTCTGTTAAGGCTCCTATTTCATTTACCCCTGCATTATTATATAACACCAAGGAGCTTCCTGTAAGACCGGGTGAACCTGATTGTCCATTCTACCTGAAAACTGGAAGTTGCAAGTATGGGGCAACTTGCCGCTACAATCATCCTGATAGATATGCAATCAATCCGCCAATTGCTGCAATCAGCCATCCAATTGTAGCCACTCCGGCTGCAGGTCTGAACATAGGAGTCATTGATCCAGCTGCCTCCATTTATCAAACTTTGGCTCAGCCAACGGTGGGAGTGTGCCCAACTGTGTATCCTCAACGCTTTGGACAGATTGAATGTGATTACTATATGAAGACAGGGGAATGTAAGTTTGGCGAGCTATGCAAATTTCATCACCCAATTGATAGGTCAGCAGTGGCGCTGTCGGCACCGAAGGCAGTGCCAGTTCAAGATGCAAACGTTAAGCTAACTCTTGCTGGACTACCTCGGAGAGAGGGTGTTATCTGTGTGTATTACCTGAAAACTGGCACGTGCAAGTATGGTGCATCCTGCAAATTTGATCACCCACCCCCTGTTGAGGTTATGGGCATGGGCGCAACACAAGGAACGTCCGGAGGGGAAGCAAAAGCAGGTGAGTTCCCACAGGAACAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

499

Amino Acids

54.11

Weight (kDa)

7.99

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	134 - 158	5.1e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	186 - 211	8.8e-06	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	233 - 258	7.8e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	308 - 333	3.6e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L	PF25585	310 - 332	5.9e-07	DUS3L CCCH zinc finger domain
zf-CCCH	PF00642	389 - 413	7.2e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	448 - 470	3.4e-09	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4	PF18345	449 - 468	1e-06	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	581
AarI	CACCTGC	1 cut(s)	1460
Acc16I	TGCGCA	1 cut(s)	712
Acc36I	ACCTGC	3 cut(s)	761, 1055, 1460
AccB1I	GGYRCC	2 cut(s)	299, 1267
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	1 cut(s)	93
AccIII	TCCGGA	1 cut(s)	1451
AclI	AACGTT	1 cut(s)	1299
AclWI	GGATC	1 cut(s)	1082
AcoI	YGGCCR	1 cut(s)	221
AcsI	RAATTY	7 cut(s)	443, 461, 599, 740, 758, 1226, 1394
AcuI	CTGAAG	2 cut(s)	555, 642
AcvI	CACGTG	1 cut(s)	1371
AcyI	GRCGYC	2 cut(s)	246, 255
AfiI	CCNNNNNNNGG	4 cut(s)	491, 1064, 1130, 1417
AgsI	TTSAA	3 cut(s)	724, 1175, 1289
AjnI	CCWGG	2 cut(s)	397, 553
AjuI	GAANNNNNNNTTGG	4 cut(s)	487, 519, 1194, 1226
Alw21I	GWGCWC	1 cut(s)	562
Alw26I	GTCTC	1 cut(s)	544
AlwI	GGATC	1 cut(s)	1082
Ama87I	CYCGRG	1 cut(s)	171
Aor13HI	TCCGGA	1 cut(s)	1451
AoxI	GGCC	3 cut(s)	221, 395, 692
ApeKI	GCWGC	7 cut(s)	29, 32, 335, 456, 1028, 1061, 1094
ApoI	RAATTY	7 cut(s)	443, 461, 599, 740, 758, 1226, 1394
Asp700I	GAANNNNTTC	1 cut(s)	540
AspLEI	GCGC	6 cut(s)	29, 95, 351, 713, 1261, 1436
AspS9I	GGNCC	1 cut(s)	144
AsuC2I	CCSGG	5 cut(s)	142, 243, 252, 823, 924
AsuHPI	GGTGA	5 cut(s)	758, 938, 1226, 1394, 1484
AsuNHI	GCTAGC	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	171
AvaII	GGWCC	1 cut(s)	144
AxyI	CCTNAGG	1 cut(s)	486
BaeGI	GKGCMC	2 cut(s)	418, 1142
BaeI	ACNNNNGTAYC	2 cut(s)	349, 382
BalI	TGGCCA	1 cut(s)	223
BanI	GGYRCC	2 cut(s)	299, 1267
BanII	GRGCYC	1 cut(s)	243
BbrPI	CACGTG	1 cut(s)	1371
BbsI	GAAGAC	1 cut(s)	1199
Bbv12I	GWGCWC	1 cut(s)	562
BbvI	GCAGC	7 cut(s)	16, 19, 322, 443, 1015, 1048, 1081
BccI	CCATC	6 cut(s)	18, 291, 477, 703, 836, 1047
BceAI	ACGGC	2 cut(s)	34, 843
BcgI	CGANNNNNNTGC	2 cut(s)	1261, 1295
BciT130I	CCWGG	2 cut(s)	399, 555
BciVI	GTATCC	1 cut(s)	1161
BclI	TGATCA	1 cut(s)	1399
BcnI	CCSGG	5 cut(s)	142, 243, 252, 823, 924
BcoDI	GTCTC	1 cut(s)	544
BfaI	CTAG	2 cut(s)	177, 354
BfmI	CTRYAG	1 cut(s)	1062
BfoI	RGCGCY	3 cut(s)	30, 352, 1262
BfuAI	ACCTGC	3 cut(s)	761, 1055, 1460
BfuI	GTATCC	1 cut(s)	1161
BglI	GCCNNNNNGGC	1 cut(s)	1058
BlpI	GCTNAGC	1 cut(s)	1119
Bme1390I	CCNGG	7 cut(s)	142, 243, 252, 399, 555, 823, 924
Bme18I	GGWCC	1 cut(s)	144
BmeT110I	CYCGRG	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	6 cut(s)	145, 301, 483, 516, 867, 1269
BmrFI	CCNGG	7 cut(s)	142, 243, 252, 399, 555, 823, 924
BmrI	ACTGGG	1 cut(s)	738
BmsI	GCATC	4 cut(s)	584, 643, 1282, 1394
BmtI	GCTAGC	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	738
BpiI	GAAGAC	1 cut(s)	1199
BpmI	CTGGAG	2 cut(s)	213, 834
Bpu1102I	GCTNAGC	1 cut(s)	1119
BpuMI	CCSGG	5 cut(s)	142, 243, 252, 823, 924
BsaAI	YACGTR	1 cut(s)	1371
BsaHI	GRCGYC	2 cut(s)	246, 255
BsaI	GGTCTC	1 cut(s)	544
BsaJI	CCNNGG	3 cut(s)	250, 903, 1325
BsaWI	WCCGGW	1 cut(s)	1451
BsaXI	ACNNNNNCTCC	2 cut(s)	1321, 1351
Bsc4I	CCNNNNNNNGG	4 cut(s)	491, 1064, 1130, 1417
Bse1I	ACTGG	5 cut(s)	733, 853, 961, 1283, 1369
Bse21I	CCTNAGG	1 cut(s)	486
Bse3DI	GCAATG	1 cut(s)	740
BseAI	TCCGGA	1 cut(s)	1451
BseBI	CCWGG	2 cut(s)	399, 555
BseDI	CCNNGG	3 cut(s)	250, 903, 1325
BseGI	GGATG	6 cut(s)	469, 625, 847, 994, 1039, 1385
BseLI	CCNNNNNNNGG	4 cut(s)	491, 1064, 1130, 1417
BseMI	GCAATG	1 cut(s)	740
BseMII	CTCAG	4 cut(s)	477, 537, 678, 1133
BseNI	ACTGG	5 cut(s)	733, 853, 961, 1283, 1369
BseRI	GAGGAG	2 cut(s)	64, 76
BseSI	GKGCMC	2 cut(s)	418, 1142
BseXI	GCAGC	7 cut(s)	16, 19, 322, 443, 1015, 1048, 1081
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	3 cut(s)	223, 397, 694
BshNI	GGYRCC	2 cut(s)	299, 1267
BsiHKAI	GWGCWC	1 cut(s)	562
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	7 cut(s)	141, 243, 252, 822, 923, 1058, 1452
BslFI	GGGAC	2 cut(s)	233, 838
BslI	CCNNNNNNNGG	4 cut(s)	491, 1064, 1130, 1417
BsmAI	GTCTC	1 cut(s)	544
BsmFI	GGGAC	2 cut(s)	233, 838
BsmI	GAATGC	1 cut(s)	713
BsnI	GGCC	3 cut(s)	223, 397, 694
Bso31I	GGTCTC	1 cut(s)	544
BsoBI	CYCGRG	1 cut(s)	171
Bsp1286I	GDGCHC	4 cut(s)	243, 418, 562, 1142
Bsp13I	TCCGGA	1 cut(s)	1451
Bsp143I	GATC	2 cut(s)	1087, 1399
Bsp1720I	GCTNAGC	1 cut(s)	1119
BspANI	GGCC	3 cut(s)	223, 397, 694
BspCNI	CTCAG	4 cut(s)	478, 538, 679, 1132
BspEI	TCCGGA	1 cut(s)	1451
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	6 cut(s)	145, 301, 483, 516, 867, 1269
BspMAI	CTGCAG	1 cut(s)	1066
BspMI	ACCTGC	3 cut(s)	761, 1055, 1460
BspOI	GCTAGC	1 cut(s)	180
BspPI	GGATC	1 cut(s)	1082
BspT107I	GGYRCC	2 cut(s)	299, 1267
BspTNI	GGTCTC	1 cut(s)	544
BsrDI	GCAATG	1 cut(s)	740
BsrI	ACTGG	5 cut(s)	733, 853, 961, 1283, 1369
BssECI	CCNNGG	3 cut(s)	250, 903, 1325
BssMI	GATC	2 cut(s)	1087, 1399
BssNI	GRCGYC	2 cut(s)	246, 255
BssT1I	CCWWGG	1 cut(s)	903
Bst2UI	CCWGG	2 cut(s)	399, 555
Bst4CI	ACNGT	2 cut(s)	1129, 1147
BstACI	GRCGYC	2 cut(s)	246, 255
BstBAI	YACGTR	1 cut(s)	1371
BstC8I	GCNNGC	4 cut(s)	178, 225, 370, 1217
BstDEI	CTNAG	4 cut(s)	486, 546, 687, 1119
BstF5I	GGATG	6 cut(s)	469, 625, 847, 994, 1039, 1385
BstFNI	CGCG	1 cut(s)	93
BstH2I	RGCGCY	3 cut(s)	30, 352, 1262
BstHHI	GCGC	6 cut(s)	29, 95, 351, 713, 1261, 1436
BstKTI	GATC	2 cut(s)	1090, 1402
BstMAI	GTCTC	1 cut(s)	544
BstMBI	GATC	2 cut(s)	1087, 1399
BstNI	CCWGG	2 cut(s)	399, 555
BstSCI	CCNGG	7 cut(s)	140, 241, 250, 397, 553, 821, 922
BstSFI	CTRYAG	1 cut(s)	1062
BstSLI	GKGCMC	2 cut(s)	418, 1142
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	7 cut(s)	16, 19, 322, 443, 1015, 1048, 1081
BstV2I	GAAGAC	1 cut(s)	1199
Bsu36I	CCTNAGG	1 cut(s)	486
BsuI	GTATCC	1 cut(s)	1161
BsuRI	GGCC	3 cut(s)	223, 397, 694
BtsCI	GGATG	6 cut(s)	469, 625, 847, 994, 1039, 1385
BtsI	GCAGTG	2 cut(s)	1260, 1284
BtsIMutI	CAGTG	2 cut(s)	1260, 1284
BveI	ACCTGC	3 cut(s)	761, 1055, 1460
Cac8I	GCNNGC	4 cut(s)	178, 225, 370, 1217
CfoI	GCGC	6 cut(s)	29, 95, 351, 713, 1261, 1436
Cfr13I	GGNCC	1 cut(s)	144
CseI	GACGC	2 cut(s)	235, 244
CviAII	CATG	4 cut(s)	184, 219, 708, 1429
DdeI	CTNAG	4 cut(s)	486, 546, 687, 1119
DpnI	GATC	2 cut(s)	1089, 1401
DpnII	GATC	2 cut(s)	1087, 1399
EaeI	YGGCCR	1 cut(s)	221
EciI	GGCGGA	2 cut(s)	183, 1008
Eco130I	CCWWGG	1 cut(s)	903
Eco24I	GRGCYC	1 cut(s)	243
Eco31I	GGTCTC	1 cut(s)	544
Eco32I	GATATC	1 cut(s)	778
Eco47I	GGWCC	1 cut(s)	144
Eco57I	CTGAAG	2 cut(s)	555, 642
Eco72I	CACGTG	1 cut(s)	1371
Eco81I	CCTNAGG	1 cut(s)	486
Eco88I	CYCGRG	1 cut(s)	171
EcoRII	CCWGG	2 cut(s)	397, 553
EcoRV	GATATC	1 cut(s)	778
EcoT14I	CCWWGG	1 cut(s)	903
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	903
FaeI	CATG	4 cut(s)	187, 222, 711, 1432
FaqI	GGGAC	2 cut(s)	233, 838
FatI	CATG	4 cut(s)	183, 218, 707, 1428
FauI	CCCGC	2 cut(s)	98, 130
FbaI	TGATCA	1 cut(s)	1399
FblI	GTMKAC	1 cut(s)	81
FokI	GGATG	6 cut(s)	456, 612, 854, 981, 1026, 1372
FriOI	GRGCYC	1 cut(s)	243
FspAI	RTGCGCAY	1 cut(s)	712
FspBI	CTAG	2 cut(s)	177, 354
FspI	TGCGCA	1 cut(s)	712
GlaI	GCGC	6 cut(s)	28, 94, 350, 712, 1260, 1435
GsuI	CTGGAG	2 cut(s)	213, 834
HaeII	RGCGCY	3 cut(s)	30, 352, 1262
HaeIII	GGCC	3 cut(s)	223, 397, 694
HapII	CCGG	7 cut(s)	141, 243, 252, 822, 923, 1058, 1452
HgaI	GACGC	2 cut(s)	235, 244
HhaI	GCGC	6 cut(s)	29, 95, 351, 713, 1261, 1436
Hin1I	GRCGYC	2 cut(s)	246, 255
Hin1II	CATG	4 cut(s)	187, 222, 711, 1432
Hin6I	GCGC	6 cut(s)	27, 93, 349, 711, 1259, 1434
HinP1I	GCGC	6 cut(s)	27, 93, 349, 711, 1259, 1434
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	5 cut(s)	104, 205, 495, 586, 1080
HpaII	CCGG	7 cut(s)	141, 243, 252, 822, 923, 1058, 1452
HphI	GGTGA	5 cut(s)	758, 938, 1226, 1394, 1484
Hpy166II	GTNNAC	2 cut(s)	82, 929
Hpy188III	TCNNGA	7 cut(s)	230, 485, 545, 835, 998, 1289, 1452
Hpy8I	GTNNAC	2 cut(s)	82, 929
HpyAV	CCTTC	4 cut(s)	400, 551, 625, 1267
HpyCH4III	ACNGT	2 cut(s)	1129, 1147
HpyCH4IV	ACGT	3 cut(s)	1299, 1370, 1448
HpyF3I	CTNAG	4 cut(s)	486, 546, 687, 1119
HpySE526I	ACGT	3 cut(s)	1299, 1370, 1448
Hsp92I	GRCGYC	2 cut(s)	246, 255
Hsp92II	CATG	4 cut(s)	187, 222, 711, 1432
HspAI	GCGC	6 cut(s)	27, 93, 349, 711, 1259, 1434
Kpn2I	TCCGGA	1 cut(s)	1451
Ksp22I	TGATCA	1 cut(s)	1399
Kzo9I	GATC	2 cut(s)	1087, 1399
LmnI	GCTCC	6 cut(s)	185, 232, 532, 557, 871, 907
Lsp1109I	GCAGC	7 cut(s)	16, 19, 322, 443, 1015, 1048, 1081
LweI	GCATC	4 cut(s)	584, 643, 1282, 1394
MaeI	CTAG	2 cut(s)	177, 354
MaeII	ACGT	3 cut(s)	1299, 1370, 1448
MaeIII	GTNAC	1 cut(s)	748
MalI	GATC	2 cut(s)	1089, 1401
MboI	GATC	2 cut(s)	1087, 1399
MboII	GAAGA	2 cut(s)	182, 1204
MfeI	CAATTG	3 cut(s)	1023, 1044, 1239
MhlI	GDGCHC	4 cut(s)	243, 418, 562, 1142
MlsI	TGGCCA	1 cut(s)	223
MluNI	TGGCCA	1 cut(s)	223
MlyI	GAGTC	3 cut(s)	98, 580, 1089
MmeI	TCCRAC	3 cut(s)	141, 171, 554
Mox20I	TGGCCA	1 cut(s)	223
MroI	TCCGGA	1 cut(s)	1451
MroXI	GAANNNNTTC	1 cut(s)	540
MscI	TGGCCA	1 cut(s)	223
MseI	TTAA	3 cut(s)	621, 861, 1302
Msp20I	TGGCCA	1 cut(s)	223
MspA1I	CMGCKG	1 cut(s)	1094
MspI	CCGG	7 cut(s)	141, 243, 252, 822, 923, 1058, 1452
MspR9I	CCNGG	7 cut(s)	142, 243, 252, 399, 555, 823, 924
MunI	CAATTG	3 cut(s)	1023, 1044, 1239
Mva1269I	GAATGC	1 cut(s)	713
MvaI	CCWGG	2 cut(s)	399, 555
MvnI	CGCG	1 cut(s)	93
NciI	CCSGG	5 cut(s)	142, 243, 252, 823, 924
NdeII	GATC	2 cut(s)	1087, 1399
NheI	GCTAGC	1 cut(s)	176
NlaIII	CATG	4 cut(s)	187, 222, 711, 1432
NlaIV	GGNNCC	6 cut(s)	145, 301, 483, 516, 867, 1269
NmuCI	GTSAC	1 cut(s)	748
NsbI	TGCGCA	1 cut(s)	712
PaqCI	CACCTGC	1 cut(s)	1460
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PctI	GAATGC	1 cut(s)	713
PdmI	GAANNNNTTC	1 cut(s)	540
PfeI	GAWTC	2 cut(s)	205, 495
PleI	GAGTC	3 cut(s)	98, 580, 1088
PmaCI	CACGTG	1 cut(s)	1371
PmlI	CACGTG	1 cut(s)	1371
PpsI	GAGTC	3 cut(s)	98, 580, 1088
Ppu21I	YACGTR	1 cut(s)	1371
PsiI	TTATAA	1 cut(s)	581
Psp1406I	AACGTT	1 cut(s)	1299
Psp6I	CCWGG	2 cut(s)	397, 553
PspCI	CACGTG	1 cut(s)	1371
PspGI	CCWGG	2 cut(s)	397, 553
PspN4I	GGNNCC	6 cut(s)	145, 301, 483, 516, 867, 1269
PspPI	GGNCC	1 cut(s)	144
PstI	CTGCAG	1 cut(s)	1066
PvuII	CAGCTG	1 cut(s)	1094
SaqAI	TTAA	3 cut(s)	621, 861, 1302
Sau3AI	GATC	2 cut(s)	1087, 1399
Sau96I	GGNCC	1 cut(s)	144
SchI	GAGTC	3 cut(s)	98, 580, 1089
ScrFI	CCNGG	7 cut(s)	142, 243, 252, 399, 555, 823, 924
SduI	GDGCHC	4 cut(s)	243, 418, 562, 1142
SfaNI	GCATC	4 cut(s)	584, 643, 1282, 1394
SfcI	CTRYAG	1 cut(s)	1062
SinI	GGWCC	1 cut(s)	144
SspMI	CTAG	2 cut(s)	177, 354
StyD4I	CCNGG	7 cut(s)	140, 241, 250, 397, 553, 821, 922
StyI	CCWWGG	1 cut(s)	903
TaaI	ACNGT	2 cut(s)	1129, 1147
TaiI	ACGT	3 cut(s)	1302, 1373, 1451
TaqI	TCGA	1 cut(s)	237
TauI	GCSGC	5 cut(s)	56, 65, 68, 199, 987
TfiI	GAWTC	2 cut(s)	205, 495
Tru1I	TTAA	3 cut(s)	621, 861, 1302
Tru9I	TTAA	3 cut(s)	621, 861, 1302
TscAI	CASTG	2 cut(s)	1260, 1284
TseFI	GTSAC	1 cut(s)	748
TseI	GCWGC	7 cut(s)	29, 32, 335, 456, 1028, 1061, 1094
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	4 cut(s)	752, 864, 1205, 1220
TspGWI	ACGGA	2 cut(s)	67, 854
TspRI	CASTG	2 cut(s)	1260, 1284
VpaK11BI	GGWCC	1 cut(s)	144
XapI	RAATTY	7 cut(s)	443, 461, 599, 740, 758, 1226, 1394
XmiI	GTMKAC	1 cut(s)	81
XmnI	GAANNNNTTC	1 cut(s)	540
XspI	CTAG	2 cut(s)	177, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.