Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042157.1

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1517

Gene Structure 1517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042157.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atgcaagtatggtgcacccgcaaatttaatcacccaaaagacatccagataccatcagccactcaagagaataaatctggtgaaactgagacagctcttaagacggagggctttgaagttgccgtgaagcctcttgtttcattctctccagcactattatattactccaaagaccttcctgtaagaccgggtgaagctgattgtccattctacctgaaaactggaagttgcaagtatggggccacttgccggtacaatcaccctgatagatatgatatcaatctacctgttgctgcaatcagctattctctttcagcgccttcagttgcaggttttaacatgagtttgatctgttttactgtgaaggtgggagcgagccctgctgtttgtcctcagcgctttggacaggctgagtgtgaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

140

Amino Acids

15.36

Weight (kDa)

7.54

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	320
AciI	CCGC	1 cut(s)	19
AcsI	RAATTY	1 cut(s)	23
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	1 cut(s)	254
AfeI	AGCGCT	1 cut(s)	398
AfiI	CCNNNNNNNGG	1 cut(s)	249
AflII	CTTAAG	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	116
AluBI	AGCT	3 cut(s)	95, 197, 303
AluI	AGCT	3 cut(s)	95, 197, 303
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	83
Alw44I	GTGCAC	1 cut(s)	13
Aor51HI	AGCGCT	1 cut(s)	398
AoxI	GGCC	1 cut(s)	240
ApaLI	GTGCAC	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	1 cut(s)	23
AspLEI	GCGC	2 cut(s)	319, 399
AspS9I	GGNCC	1 cut(s)	240
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	4 cut(s)	23, 92, 203, 251
BaeGI	GKGCMC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	17
BbvCI	CCTCAGC	1 cut(s)	393
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	1 cut(s)	61
BceAI	ACGGC	1 cut(s)	107
BcnI	CCSGG	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	83
BfoI	RGCGCY	2 cut(s)	320, 400
BfrI	CTTAAG	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	320
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	189
BpmI	CTGGAG	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	189
BsaBI	GATNNNNATC	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
Bse118I	RCCGGY	1 cut(s)	249
Bse1I	ACTGG	1 cut(s)	226
Bse8I	GATNNNNATC	1 cut(s)	279
BseGI	GGATG	1 cut(s)	42
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseMII	CTCAG	3 cut(s)	78, 402, 407
BseNI	ACTGG	1 cut(s)	226
BseSI	GKGCMC	1 cut(s)	17
BseXI	GCAGC	1 cut(s)	280
BshFI	GGCC	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	2 cut(s)	188, 250
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	242
Bsp1286I	GDGCHC	2 cut(s)	17, 380
Bsp143I	GATC	1 cut(s)	348
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	3 cut(s)	79, 403, 406
BspLI	GGNNCC	1 cut(s)	241
BspMI	ACCTGC	1 cut(s)	320
BspTI	CTTAAG	1 cut(s)	98
BsrFI	RCCGGY	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	226
BssAI	RCCGGY	1 cut(s)	249
BssMI	GATC	1 cut(s)	348
Bst4CI	ACNGT	1 cut(s)	361
BstAFI	CTTAAG	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	3 cut(s)	87, 393, 411
BstF5I	GGATG	1 cut(s)	42
BstH2I	RGCGCY	2 cut(s)	320, 400
BstHHI	GCGC	2 cut(s)	319, 399
BstKTI	GATC	1 cut(s)	351
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	187
BstSLI	GKGCMC	1 cut(s)	17
BstV1I	GCAGC	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	242
BtsCI	GGATG	1 cut(s)	42
BveI	ACCTGC	1 cut(s)	320
Cac8I	GCNNGC	1 cut(s)	376
CfoI	GCGC	2 cut(s)	319, 399
Cfr10I	RCCGGY	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	1 cut(s)	340
CviJI	RGCY	9 cut(s)	59, 95, 111, 130, 197, 242, 303, 378, 410
CviKI_1	RGCY	9 cut(s)	59, 95, 111, 130, 197, 242, 303, 378, 410
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	3 cut(s)	87, 393, 411
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	380
Eco32I	GATATC	1 cut(s)	277
Eco47III	AGCGCT	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	306
EcoRV	GATATC	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	380
FaeI	CATG	1 cut(s)	343
FaiI	YATR	5 cut(s)	10, 160, 237, 273, 341
FatI	CATG	1 cut(s)	339
FauI	CCCGC	1 cut(s)	26
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	380
Fsp4HI	GCNGC	1 cut(s)	294
GlaI	GCGC	2 cut(s)	318, 398
GluI	GCNGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	132
HaeII	RGCGCY	2 cut(s)	320, 400
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	2 cut(s)	188, 250
HhaI	GCGC	2 cut(s)	319, 399
Hin1II	CATG	1 cut(s)	343
Hin6I	GCGC	2 cut(s)	317, 397
HinP1I	GCGC	2 cut(s)	317, 397
HpaII	CCGG	2 cut(s)	188, 250
HphI	GGTGA	4 cut(s)	23, 92, 203, 251
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188III	TCNNGA	2 cut(s)	46, 65
Hpy8I	GTNNAC	1 cut(s)	15
HpyAV	CCTTC	3 cut(s)	185, 330, 358
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	5 cut(s)	4, 15, 231, 296, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	3 cut(s)	87, 393, 411
Hsp92II	CATG	1 cut(s)	343
HspAI	GCGC	2 cut(s)	317, 397
Kzo9I	GATC	1 cut(s)	348
LmnI	GCTCC	1 cut(s)	371
Lsp1109I	GCAGC	1 cut(s)	280
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MhlI	GDGCHC	2 cut(s)	17, 380
MluCI	AATT	1 cut(s)	23
MnlI	CCTC	3 cut(s)	100, 141, 402
MseI	TTAA	3 cut(s)	27, 99, 336
MspCI	CTTAAG	1 cut(s)	98
MspI	CCGG	2 cut(s)	188, 250
MspR9I	CCNGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	380
NciI	CCSGG	1 cut(s)	189
NdeII	GATC	1 cut(s)	348
NlaIII	CATG	1 cut(s)	343
NlaIV	GGNNCC	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	240
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SaqAI	TTAA	3 cut(s)	27, 99, 336
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	1 cut(s)	348
Sau96I	GGNCC	1 cut(s)	240
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	2 cut(s)	17, 380
SetI	ASST	8 cut(s)	97, 177, 199, 216, 289, 305, 334, 369
SmlI	CTYRAG	2 cut(s)	63, 98
SmoI	CTYRAG	2 cut(s)	63, 98
Sse9I	AATT	1 cut(s)	23
SsiI	CCGC	1 cut(s)	19
StyD4I	CCNGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	361
TasI	AATT	1 cut(s)	23
Tru1I	TTAA	3 cut(s)	27, 99, 336
Tru9I	TTAA	3 cut(s)	27, 99, 336
TseI	GCWGC	1 cut(s)	293
TspDTI	ATGAA	1 cut(s)	129
TspGWI	ACGGA	1 cut(s)	119
Vha464I	CTTAAG	1 cut(s)	98
VneI	GTGCAC	1 cut(s)	13
XapI	RAATTY	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.