Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Reverse (-)

16847733 .. 16852337

Gene Structure 4605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30268

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTTTAAACATTTCTACTTGAAAACTGGGCAATGCAAGTATGGTGCACCCTGCAAATTTAATCACCCAAAAGACATCCAGATACCATCAGCCACTCAAGAGAATAAATCTGGCGAAACTGAGACAGCTATTAAGACGGAGGGCTTTGAAGTTGCCGTGAAGCCTCTTGTTTCATTCTCTGCAGCACTATTATATTACTCCAAAGAGCTTCCTGTAAGACCGGGTGAAGCTGATTGTCCATTCTACCTGAAAACTGGAAGTTGCAAGTATGGGGCCACTTGCCGGTACAATCACCCTGATAGATATGATATCAATCTACCTGTTGCTGCAATCAGCTATTCTCTTTCAGTGCCTTCAGTTGCAGGCATTTTTGTTTTGTGGGAGCGAGCCCTGCTGTTTGTCCTCAGTGCTTTGGACAGGCTGAGTGTGAAATTCCATCACCCGATTGATAGGCCAGCAGTGGCGTTGTCAACAACAAAGCCATCTCAACAAGAAAATGTGAAGCTAACGCTTGCTGGACTACCTAGGAGAGAGGGTGCCGTTATCTGTGTGTGTTGCCCTAAAACTGGCACATGCAAGTATGGTGCAACTTGCAGATTTGACCACCCACCTCCTGGCGCAGTTGTAGCAATGGCAGCTTCACAAGCAAAATCCGATTCTACTGGAGGGAAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

225

Amino Acids

24.42

Weight (kDa)

9.04

Isoelectric Point (pI)

29.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	4 - 24	1.4e-06	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	74 - 99	1.8e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L	PF25585	76 - 98	2.4e-07	DUS3L CCCH zinc finger domain
zf_CCCH_4	PF18345	79 - 98	4.5e-06	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	536
AccB7I	CCANNNNNTGG	1 cut(s)	614
AcsI	RAATTY	2 cut(s)	56, 431
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	3 cut(s)	282, 566, 614
AgsI	TTSAA	2 cut(s)	22, 149
AjnI	CCWGG	1 cut(s)	613
AluBI	AGCT	6 cut(s)	128, 208, 230, 336, 505, 638
AluI	AGCT	6 cut(s)	128, 208, 230, 336, 505, 638
Alw21I	GWGCWC	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	116
Alw44I	GTGCAC	1 cut(s)	45
AoxI	GGCC	2 cut(s)	273, 452
ApaLI	GTGCAC	1 cut(s)	45
ApeKI	GCWGC	3 cut(s)	182, 326, 635
ApoI	RAATTY	2 cut(s)	56, 431
AspA2I	CCTAGG	1 cut(s)	524
AspLEI	GCGC	1 cut(s)	620
AspS9I	GGNCC	1 cut(s)	273
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	4 cut(s)	56, 236, 284, 431
AvrII	CCTAGG	1 cut(s)	524
BaeGI	GKGCMC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	536
BanII	GRGCYC	1 cut(s)	391
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	3 cut(s)	194, 313, 647
BccI	CCATC	3 cut(s)	94, 444, 490
BceAI	ACGGC	2 cut(s)	140, 524
BciT130I	CCWGG	1 cut(s)	615
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	525
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	3 cut(s)	183, 327, 636
BlnI	CCTAGG	1 cut(s)	524
BlsI	GCNGC	3 cut(s)	184, 328, 637
Bme1390I	CCNGG	2 cut(s)	222, 615
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	2 cut(s)	274, 538
BmrFI	CCNGG	2 cut(s)	222, 615
BmrI	ACTGGG	1 cut(s)	36
BmuI	ACTGGG	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	222
BsaBI	GATNNNNATC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	524
BsaXI	ACNNNNNCTCC	2 cut(s)	520, 550
Bsc4I	CCNNNNNNNGG	3 cut(s)	282, 566, 614
Bse118I	RCCGGY	1 cut(s)	282
Bse1I	ACTGG	4 cut(s)	31, 259, 571, 667
Bse3DI	GCAATG	2 cut(s)	38, 636
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	615
BseDI	CCNNGG	1 cut(s)	524
BseGI	GGATG	1 cut(s)	75
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	3 cut(s)	282, 566, 614
BseMI	GCAATG	2 cut(s)	38, 636
BseMII	CTCAG	3 cut(s)	111, 413, 418
BseNI	ACTGG	4 cut(s)	31, 259, 571, 667
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	3 cut(s)	194, 313, 647
BshFI	GGCC	2 cut(s)	275, 454
BshNI	GGYRCC	1 cut(s)	536
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	221, 283
BslI	CCNNNNNNNGG	3 cut(s)	282, 566, 614
BsmAI	GTCTC	1 cut(s)	116
BsnI	GGCC	2 cut(s)	275, 454
Bsp1286I	GDGCHC	2 cut(s)	49, 391
BspANI	GGCC	2 cut(s)	275, 454
BspCNI	CTCAG	3 cut(s)	112, 414, 417
BspLI	GGNNCC	2 cut(s)	274, 538
BspMAI	CTGCAG	1 cut(s)	184
BspT107I	GGYRCC	1 cut(s)	536
BsrDI	GCAATG	2 cut(s)	38, 636
BsrFI	RCCGGY	1 cut(s)	282
BsrI	ACTGG	4 cut(s)	31, 259, 571, 667
BssAI	RCCGGY	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	524
BssT1I	CCWWGG	1 cut(s)	524
Bst2UI	CCWGG	1 cut(s)	615
BstC8I	GCNNGC	4 cut(s)	364, 387, 456, 513
BstDEI	CTNAG	3 cut(s)	120, 404, 422
BstF5I	GGATG	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	620
BstMAI	GTCTC	1 cut(s)	116
BstMWI	GCNNNNNNNGC	4 cut(s)	391, 626, 635, 644
BstNI	CCWGG	1 cut(s)	615
BstNSI	RCATGY	1 cut(s)	576
BstSCI	CCNGG	2 cut(s)	220, 613
BstSFI	CTRYAG	1 cut(s)	180
BstSLI	GKGCMC	1 cut(s)	49
BstV1I	GCAGC	3 cut(s)	194, 313, 647
BsuRI	GGCC	2 cut(s)	275, 454
BtsCI	GGATG	1 cut(s)	75
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	3 cut(s)	354, 412, 465
Cac8I	GCNNGC	4 cut(s)	364, 387, 456, 513
CfoI	GCGC	1 cut(s)	620
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	1 cut(s)	573
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	3 cut(s)	120, 404, 422
DraI	TTTAAA	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	524
Eco24I	GRGCYC	1 cut(s)	391
Eco32I	GATATC	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	339
EcoRII	CCWGG	1 cut(s)	613
EcoRV	GATATC	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	524
EcoT38I	GRGCYC	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	524
FaeI	CATG	1 cut(s)	576
FaiI	YATR	7 cut(s)	42, 193, 270, 306, 574, 582, 676
FatI	CATG	1 cut(s)	572
Fnu4HI	GCNGC	3 cut(s)	183, 327, 636
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	391
Fsp4HI	GCNGC	3 cut(s)	183, 327, 636
FspBI	CTAG	1 cut(s)	525
GlaI	GCGC	1 cut(s)	619
GluI	GCNGC	3 cut(s)	183, 327, 636
HaeIII	GGCC	2 cut(s)	275, 454
HapII	CCGG	2 cut(s)	221, 283
HhaI	GCGC	1 cut(s)	620
Hin1II	CATG	1 cut(s)	576
Hin6I	GCGC	1 cut(s)	618
HinP1I	GCGC	1 cut(s)	618
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HinfI	GANTC	1 cut(s)	656
HpaII	CCGG	2 cut(s)	221, 283
HphI	GGTGA	4 cut(s)	56, 236, 284, 431
Hpy166II	GTNNAC	2 cut(s)	47, 471
Hpy188I	TCNGA	1 cut(s)	655
Hpy188III	TCNNGA	2 cut(s)	79, 98
Hpy8I	GTNNAC	2 cut(s)	47, 471
HpyAV	CCTTC	1 cut(s)	363
HpyF10VI	GCNNNNNNNGC	4 cut(s)	391, 626, 635, 644
HpyF3I	CTNAG	3 cut(s)	120, 404, 422
Hsp92II	CATG	1 cut(s)	576
HspAI	GCGC	1 cut(s)	618
LmnI	GCTCC	1 cut(s)	382
Lsp1109I	GCAGC	3 cut(s)	194, 313, 647
MaeI	CTAG	1 cut(s)	525
MhlI	GDGCHC	2 cut(s)	49, 391
MluCI	AATT	2 cut(s)	56, 431
MnlI	CCTC	6 cut(s)	133, 174, 413, 526, 621, 659
MseI	TTAA	3 cut(s)	6, 60, 132
MspI	CCGG	2 cut(s)	221, 283
MspR9I	CCNGG	2 cut(s)	222, 615
MssI	GTTTAAAC	1 cut(s)	7
MvaI	CCWGG	1 cut(s)	615
MwoI	GCNNNNNNNGC	4 cut(s)	391, 626, 635, 644
NciI	CCSGG	1 cut(s)	222
NlaIII	CATG	1 cut(s)	576
NlaIV	GGNNCC	2 cut(s)	274, 538
NspI	RCATGY	1 cut(s)	576
PfeI	GAWTC	1 cut(s)	656
PflMI	CCANNNNNTGG	1 cut(s)	614
PkrI	GCNGC	3 cut(s)	184, 328, 637
PmeI	GTTTAAAC	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	2 cut(s)	274, 538
PspPI	GGNCC	1 cut(s)	273
PstI	CTGCAG	1 cut(s)	184
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SaqAI	TTAA	3 cut(s)	6, 60, 132
SatI	GCNGC	3 cut(s)	183, 327, 636
Sau96I	GGNCC	1 cut(s)	273
ScrFI	CCNGG	2 cut(s)	222, 615
SduI	GDGCHC	2 cut(s)	49, 391
SfcI	CTRYAG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	2 cut(s)	56, 431
SspMI	CTAG	1 cut(s)	525
StyD4I	CCNGG	2 cut(s)	220, 613
StyI	CCWWGG	1 cut(s)	524
TasI	AATT	2 cut(s)	56, 431
TfiI	GAWTC	1 cut(s)	656
Tru1I	TTAA	3 cut(s)	6, 60, 132
Tru9I	TTAA	3 cut(s)	6, 60, 132
TscAI	CASTG	3 cut(s)	354, 412, 465
TseI	GCWGC	3 cut(s)	182, 326, 635
TspDTI	ATGAA	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	3 cut(s)	354, 412, 465
Van91I	CCANNNNNTGG	1 cut(s)	614
VneI	GTGCAC	1 cut(s)	45
XapI	RAATTY	2 cut(s)	56, 431
XceI	RCATGY	1 cut(s)	576
XcmI	CCANNNNNNNNNTGG	1 cut(s)	611
XmaJI	CCTAGG	1 cut(s)	524
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.