Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Reverse (-)

16652937 .. 16654414

Gene Structure 1478 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30249

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAAGACTGGAGAATGTAAGTATGGTGCACAATGCAGATTCCATCACCCAATTGATAGGCCAGCAGTGGCATTGTCAACAACAAAGCCATCTCAACAAGAAAATGTGAAGCTAACGCTTGCTGGACTACCTAGGAGAGAGGGTGCCGTTATCTATGTGTATTACCTTAAAACCGGCGCATGCAAGTATGGTGCAACCTGCAGATTTGACCACCCACCTCCTGGCGAAGTTGTAGCAATGGCAGCTTCACAAGGAAAATCTGATTCTACCGGAGGGAAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

94

Amino Acids

10.07

Weight (kDa)

9.33

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	1 - 17	8.8e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	54 - 73	2.1e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4	PF18345	54 - 71	3.3e-06	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	206
AccB1I	GGYRCC	1 cut(s)	143
AccB7I	CCANNNNNTGG	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	2 cut(s)	112, 245
AluI	AGCT	2 cut(s)	112, 245
Alw21I	GWGCWC	1 cut(s)	31
Alw44I	GTGCAC	1 cut(s)	27
AoxI	GGCC	1 cut(s)	59
ApaLI	GTGCAC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	242
AspA2I	CCTAGG	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	38
AvrII	CCTAGG	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	254
BccI	CCATC	2 cut(s)	51, 97
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	222
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	199
BfuAI	ACCTGC	1 cut(s)	206
BisI	GCNGC	1 cut(s)	243
BlnI	CCTAGG	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	131
BsaWI	WCCGGW	1 cut(s)	269
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	13
Bse3DI	GCAATG	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	13
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	254
BshFI	GGCC	1 cut(s)	61
BshNI	GGYRCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	174, 270
BslI	CCNNNNNNNGG	1 cut(s)	221
BsnI	GGCC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	31
BspANI	GGCC	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	145
BspMAI	CTGCAG	1 cut(s)	203
BspMI	ACCTGC	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	243
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	222
BstC8I	GCNNGC	3 cut(s)	63, 120, 181
BstHHI	GCGC	1 cut(s)	179
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNI	CCWGG	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	199
BstSLI	GKGCMC	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	254
BstV2I	GAAGAC	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	61
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	72
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	3 cut(s)	63, 120, 181
CfoI	GCGC	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	173
CviAII	CATG	1 cut(s)	180
CviJI	RGCY	4 cut(s)	61, 88, 112, 245
CviKI_1	RGCY	4 cut(s)	61, 88, 112, 245
Eco130I	CCWWGG	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	1 cut(s)	183
FaiI	YATR	5 cut(s)	24, 156, 181, 189, 283
FatI	CATG	1 cut(s)	179
Fnu4HI	GCNGC	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	2 cut(s)	174, 270
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	1 cut(s)	183
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HinfI	GANTC	2 cut(s)	39, 263
HpaII	CCGG	2 cut(s)	174, 270
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	2 cut(s)	29, 78
Hpy188I	TCNGA	1 cut(s)	262
Hpy8I	GTNNAC	2 cut(s)	29, 78
HpyCH4V	TGCA	5 cut(s)	29, 36, 183, 194, 201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
Hsp92II	CATG	1 cut(s)	183
HspAI	GCGC	1 cut(s)	177
LpnPI	CCDG	6 cut(s)	75, 108, 187, 207, 211, 234
Lsp1109I	GCAGC	1 cut(s)	254
MaeI	CTAG	1 cut(s)	132
MboII	GAAGA	1 cut(s)	16
MfeI	CAATTG	1 cut(s)	51
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	1 cut(s)	51
MnlI	CCTC	3 cut(s)	133, 228, 266
MseI	TTAA	1 cut(s)	168
MspI	CCGG	2 cut(s)	174, 270
MspR9I	CCNGG	1 cut(s)	222
MunI	CAATTG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	242
NlaIII	CATG	1 cut(s)	183
NlaIV	GGNNCC	1 cut(s)	145
NspI	RCATGY	1 cut(s)	183
PaeI	GCATGC	1 cut(s)	183
PfeI	GAWTC	2 cut(s)	39, 263
PflMI	CCANNNNNTGG	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	145
PstI	CTGCAG	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	1 cut(s)	243
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	6 cut(s)	114, 133, 168, 200, 220, 247
SfcI	CTRYAG	1 cut(s)	199
SphI	GCATGC	1 cut(s)	183
Sse9I	AATT	1 cut(s)	51
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	220
StyI	CCWWGG	1 cut(s)	131
TasI	AATT	1 cut(s)	51
TfiI	GAWTC	2 cut(s)	39, 263
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	1 cut(s)	72
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	72
Van91I	CCANNNNNTGG	1 cut(s)	221
VneI	GTGCAC	1 cut(s)	27
XceI	RCATGY	1 cut(s)	183
XcmI	CCANNNNNNNNNTGG	1 cut(s)	218
XmaJI	CCTAGG	1 cut(s)	131
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.