pycom10g18590

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
21818024 .. 21823847
5824 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g18590.12

Sequence Viewer

Length: 1500 bp
ATGTCCAGCCATCTCTACGGCTTCGGCGCTGCTGCTCAATCAGCCACTTCTGCCGCCACCGCCGCCGCCCTCTCCTCCGTCTACTCCTCCCGCGCCCTAACCGACTCCTACCTATCCGACCCCGCCCTCCGTTACTATTCCGGGTCCGACCCTTTCGCCGACCACCACACCCGAGCTACCTCCATGTATCTTCCGCCGCATTTGATTCCCCATTCAGCATGGCCAGCTCCCGATGTGGAGCCCGGCGTCCCCGGCGTCAAACGCCCCTCCGAAGCACTCTACCATCAGAGTTATATGGGTGCCTATAATACGATTGGGCAAGAAGCTTGGTATGCTGCGTTAGCCAAGCGCCCTAGATACGAGGGTGCAAGCACTTTGCCTATATATCCACAGAGGCCAGGAGAGAAGGATTGTGCCCATTATATGCTCACAAGAACCTGTAAATTTGGAGAGAGCTGCAAATTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCACTTGTTGCTCCAACTGAAGTCCTTCCTGAGAGAACAGGAGCACCAGATTGTCCTTACTTTATAAAGACTCAAAGATGCAAATTTGGTATGAGGTGCAAGTTTAATCATCCGAAGGATAAAGTGATTGCTTCTGATGCTTCAGAAAATGCTGATGTTTTTACCTTACCTGAGAGGCCATCTGAACCCCCATGCGCATTCTACTTGAAAACTGGGCAATGTAAATTTGGTGTGACCTGCAAATTTCATCACCCGAAAGATATCCAAATACCATCAGCTAACCAAGAGAACAAAGCTGGAGAAACCGATACGGCTATCAAGACAGAGGGAACTGGATTTTCTGTTAAGGCTCCTATTTCATTTACCCCTGCATTATTATATAACACCAAGGAGCTTCCTGTAAGACCGGGTGAACCTGATTGTCCATTCTACCTGAAAACTGGAAGTTGCAAGTATGGGGCAACTTGCCGCTACAATCATCCTGATAGATATGCAATCAATCCGCCAATTGCTGCAATTAGCCATCCAATTGTAGCCACTCAGGCTGCAGGTCTGAACATAGGAGTCATTGATCCGGCTGCCTCCATTTATCAAACTTTGGCTCAGCCAACGGTGGGAGTCGGCCCAACTGTGTATCCTCAACGCTTTGGACAGATTGAATGTGATTACTATATGAAGACAGGGGAATGTAAGTTTGGTGAACTATGCAAATTTCATCACCCAATTGATAGGTCAGTAGTGGCGCTGTCGACACCGAAGGCAGTGCCAGTTCAAGAAGCAAACGTTAAGCTAACTCTTGCTGGACTACCTCGGAGAGAGGGTGTTGCTATCTGTGTGTATTACCTGAAAACTGGCACGTGCAAGTATGGTGCATCCTGCAAATTCGATCACCCACCCCCTGGTGAGGTTATGGGCATGGGCGCAACACAAGGAACGTCCGGAGGGGAAGCAAAAGCAGGTGAGTTCCCACAGGAACAGCAGTGA

Protein Analysis

500

Amino Acids

54.26

Weight (kDa)

7.79

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 581
AarI CACCTGC 1 cut(s) 1463
Acc16I TGCGCA 1 cut(s) 712
Acc36I ACCTGC 3 cut(s) 761, 1055, 1463
AccB1I GGYRCC 1 cut(s) 299
AccB7I CCANNNNNTGG 1 cut(s) 1415
AccI GTMKAC 2 cut(s) 81, 1265
AccII CGCG 1 cut(s) 93
AccIII TCCGGA 1 cut(s) 1454
AclI AACGTT 1 cut(s) 1299
AclWI GGATC 1 cut(s) 1082
AcoI YGGCCR 1 cut(s) 221
AcsI RAATTY 7 cut(s) 443, 461, 599, 740, 758, 1226, 1397
AcuI CTGAAG 2 cut(s) 555, 642
AcvI CACGTG 1 cut(s) 1374
AcyI GRCGYC 2 cut(s) 246, 255
AfiI CCNNNNNNNGG 4 cut(s) 491, 1130, 1415, 1420
AgsI TTSAA 3 cut(s) 724, 1175, 1289
AjnI CCWGG 2 cut(s) 397, 1414
AjuI GAANNNNNNNTTGG 4 cut(s) 487, 519, 1194, 1226
AluBI AGCT 8 cut(s) 176, 227, 326, 456, 794, 812, 910, 1306
AluI AGCT 8 cut(s) 176, 227, 326, 456, 794, 812, 910, 1306
Alw21I GWGCWC 1 cut(s) 562
AlwI GGATC 1 cut(s) 1082
Ama87I CYCGRG 1 cut(s) 171
Aor13HI TCCGGA 1 cut(s) 1454
AoxI GGCC 4 cut(s) 221, 395, 692, 1138
ApeKI GCWGC 7 cut(s) 29, 32, 335, 456, 1028, 1061, 1094
ApoI RAATTY 7 cut(s) 443, 461, 599, 740, 758, 1226, 1397
Asp700I GAANNNNTTC 1 cut(s) 540
AspLEI GCGC 6 cut(s) 29, 95, 351, 713, 1261, 1439
AspS9I GGNCC 2 cut(s) 144, 1139
AsuC2I CCSGG 4 cut(s) 142, 243, 252, 924
AsuHPI GGTGA 7 cut(s) 758, 938, 1226, 1226, 1397, 1430, 1487
AvaI CYCGRG 1 cut(s) 171
AvaII GGWCC 1 cut(s) 144
AxyI CCTNAGG 1 cut(s) 486
BaeGI GKGCMC 1 cut(s) 418
BaeI ACNNNNGTAYC 2 cut(s) 349, 382
BalI TGGCCA 1 cut(s) 223
BanI GGYRCC 1 cut(s) 299
BanII GRGCYC 1 cut(s) 243
BbrPI CACGTG 1 cut(s) 1374
BbsI GAAGAC 1 cut(s) 1199
Bbv12I GWGCWC 1 cut(s) 562
BbvI GCAGC 7 cut(s) 16, 19, 322, 443, 1015, 1048, 1081
BccI CCATC 6 cut(s) 18, 291, 477, 703, 796, 1047
BceAI ACGGC 2 cut(s) 34, 843
BcgI CGANNNNNNTGC 2 cut(s) 1261, 1295
BciT130I CCWGG 2 cut(s) 399, 1416
BciVI GTATCC 1 cut(s) 1161
BcnI CCSGG 4 cut(s) 142, 243, 252, 924
BfaI CTAG 1 cut(s) 354
BfmI CTRYAG 1 cut(s) 1062
BfoI RGCGCY 3 cut(s) 30, 352, 1262
BfuAI ACCTGC 3 cut(s) 761, 1055, 1463
BfuI GTATCC 1 cut(s) 1161
BglI GCCNNNNNGGC 1 cut(s) 1058
BlpI GCTNAGC 1 cut(s) 1119
Bme1390I CCNGG 6 cut(s) 142, 243, 252, 399, 924, 1416
Bme18I GGWCC 1 cut(s) 144
BmeT110I CYCGRG 1 cut(s) 171
BmgT120I GGNCC 2 cut(s) 144, 1139
BmiI GGNNCC 6 cut(s) 145, 240, 301, 483, 516, 867
BmrFI CCNGG 6 cut(s) 142, 243, 252, 399, 924, 1416
BmrI ACTGGG 1 cut(s) 738
BmsI GCATC 3 cut(s) 584, 643, 1397
BmuI ACTGGG 1 cut(s) 738
BpiI GAAGAC 1 cut(s) 1199
BpmI CTGGAG 1 cut(s) 834
Bpu1102I GCTNAGC 1 cut(s) 1119
BpuMI CCSGG 4 cut(s) 142, 243, 252, 924
BsaAI YACGTR 1 cut(s) 1374
BsaHI GRCGYC 2 cut(s) 246, 255
BsaJI CCNNGG 4 cut(s) 250, 903, 1325, 1414
BsaWI WCCGGW 1 cut(s) 1454
BsaXI ACNNNNNCTCC 2 cut(s) 1321, 1351
Bsc4I CCNNNNNNNGG 4 cut(s) 491, 1130, 1415, 1420
Bse1I ACTGG 5 cut(s) 733, 853, 961, 1283, 1372
Bse21I CCTNAGG 1 cut(s) 486
Bse3DI GCAATG 1 cut(s) 740
BseAI TCCGGA 1 cut(s) 1454
BseBI CCWGG 2 cut(s) 399, 1416
BseDI CCNNGG 4 cut(s) 250, 903, 1325, 1414
BseGI GGATG 5 cut(s) 469, 625, 994, 1039, 1388
BseLI CCNNNNNNNGG 4 cut(s) 491, 1130, 1415, 1420
BseMI GCAATG 1 cut(s) 740
BseMII CTCAG 5 cut(s) 477, 537, 678, 1070, 1133
BseNI ACTGG 5 cut(s) 733, 853, 961, 1283, 1372
BseRI GAGGAG 2 cut(s) 64, 76
BseSI GKGCMC 1 cut(s) 418
BseXI GCAGC 7 cut(s) 16, 19, 322, 443, 1015, 1048, 1081
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 4 cut(s) 223, 397, 694, 1140
BshNI GGYRCC 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 562
BsiHKCI CYCGRG 1 cut(s) 171
BsiSI CCGG 6 cut(s) 141, 243, 252, 923, 1091, 1455
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 4 cut(s) 491, 1130, 1415, 1420
BsmFI GGGAC 1 cut(s) 233
BsmI GAATGC 1 cut(s) 713
BsnI GGCC 4 cut(s) 223, 397, 694, 1140
BsoBI CYCGRG 1 cut(s) 171
Bsp1286I GDGCHC 3 cut(s) 243, 418, 562
Bsp13I TCCGGA 1 cut(s) 1454
Bsp143I GATC 2 cut(s) 1087, 1402
Bsp1720I GCTNAGC 1 cut(s) 1119
BspANI GGCC 4 cut(s) 223, 397, 694, 1140
BspCNI CTCAG 5 cut(s) 478, 538, 679, 1069, 1132
BspEI TCCGGA 1 cut(s) 1454
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 6 cut(s) 145, 240, 301, 483, 516, 867
BspMAI CTGCAG 1 cut(s) 1066
BspMI ACCTGC 3 cut(s) 761, 1055, 1463
BspPI GGATC 1 cut(s) 1082
BspT107I GGYRCC 1 cut(s) 299
BsrDI GCAATG 1 cut(s) 740
BsrI ACTGG 5 cut(s) 733, 853, 961, 1283, 1372
BssECI CCNNGG 4 cut(s) 250, 903, 1325, 1414
BssMI GATC 2 cut(s) 1087, 1402
BssNI GRCGYC 2 cut(s) 246, 255
BssT1I CCWWGG 1 cut(s) 903
Bst2UI CCWGG 2 cut(s) 399, 1416
Bst4CI ACNGT 2 cut(s) 1129, 1147
BstACI GRCGYC 2 cut(s) 246, 255
BstBAI YACGTR 1 cut(s) 1374
BstC8I GCNNGC 2 cut(s) 225, 370
BstDEI CTNAG 5 cut(s) 486, 546, 687, 1056, 1119
BstF5I GGATG 5 cut(s) 469, 625, 994, 1039, 1388
BstFNI CGCG 1 cut(s) 93
BstH2I RGCGCY 3 cut(s) 30, 352, 1262
BstHHI GCGC 6 cut(s) 29, 95, 351, 713, 1261, 1439
BstKTI GATC 2 cut(s) 1090, 1405
BstMBI GATC 2 cut(s) 1087, 1402
BstNI CCWGG 2 cut(s) 399, 1416
BstSCI CCNGG 6 cut(s) 140, 241, 250, 397, 922, 1414
BstSFI CTRYAG 1 cut(s) 1062
BstSLI GKGCMC 1 cut(s) 418
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 7 cut(s) 16, 19, 322, 443, 1015, 1048, 1081
BstV2I GAAGAC 1 cut(s) 1199
Bsu36I CCTNAGG 1 cut(s) 486
BsuI GTATCC 1 cut(s) 1161
BsuRI GGCC 4 cut(s) 223, 397, 694, 1140
BtsCI GGATG 5 cut(s) 469, 625, 994, 1039, 1388
BtsI GCAGTG 1 cut(s) 1284
BtsIMutI CAGTG 1 cut(s) 1284
BveI ACCTGC 3 cut(s) 761, 1055, 1463
Cac8I GCNNGC 2 cut(s) 225, 370
CfoI GCGC 6 cut(s) 29, 95, 351, 713, 1261, 1439
Cfr13I GGNCC 2 cut(s) 144, 1139
CseI GACGC 2 cut(s) 235, 244
CviAII CATG 4 cut(s) 184, 219, 708, 1432
DdeI CTNAG 5 cut(s) 486, 546, 687, 1056, 1119
DpnI GATC 2 cut(s) 1089, 1404
DpnII GATC 2 cut(s) 1087, 1402
EaeI YGGCCR 1 cut(s) 221
EciI GGCGGA 2 cut(s) 183, 1008
Eco130I CCWWGG 1 cut(s) 903
Eco24I GRGCYC 1 cut(s) 243
Eco32I GATATC 1 cut(s) 778
Eco47I GGWCC 1 cut(s) 144
Eco57I CTGAAG 2 cut(s) 555, 642
Eco72I CACGTG 1 cut(s) 1374
Eco81I CCTNAGG 1 cut(s) 486
Eco88I CYCGRG 1 cut(s) 171
EcoRII CCWGG 2 cut(s) 397, 1414
EcoRV GATATC 1 cut(s) 778
EcoT14I CCWWGG 1 cut(s) 903
EcoT38I GRGCYC 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 903
FaeI CATG 4 cut(s) 187, 222, 711, 1435
FaqI GGGAC 1 cut(s) 233
FatI CATG 4 cut(s) 183, 218, 707, 1431
FauI CCCGC 2 cut(s) 98, 130
FblI GTMKAC 2 cut(s) 81, 1265
FokI GGATG 5 cut(s) 456, 612, 981, 1026, 1375
FriOI GRGCYC 1 cut(s) 243
FspAI RTGCGCAY 1 cut(s) 712
FspBI CTAG 1 cut(s) 354
FspI TGCGCA 1 cut(s) 712
GlaI GCGC 6 cut(s) 28, 94, 350, 712, 1260, 1438
GsuI CTGGAG 1 cut(s) 834
HaeII RGCGCY 3 cut(s) 30, 352, 1262
HaeIII GGCC 4 cut(s) 223, 397, 694, 1140
HapII CCGG 6 cut(s) 141, 243, 252, 923, 1091, 1455
HgaI GACGC 2 cut(s) 235, 244
HhaI GCGC 6 cut(s) 29, 95, 351, 713, 1261, 1439
Hin1I GRCGYC 2 cut(s) 246, 255
Hin1II CATG 4 cut(s) 187, 222, 711, 1435
Hin6I GCGC 6 cut(s) 27, 93, 349, 711, 1259, 1437
HinP1I GCGC 6 cut(s) 27, 93, 349, 711, 1259, 1437
HincII GTYRAC 1 cut(s) 1266
HindII GTYRAC 1 cut(s) 1266
HindIII AAGCTT 1 cut(s) 324
HinfI GANTC 6 cut(s) 104, 205, 495, 586, 1080, 1134
HpaII CCGG 6 cut(s) 141, 243, 252, 923, 1091, 1455
HphI GGTGA 7 cut(s) 758, 938, 1226, 1226, 1397, 1430, 1487
Hpy166II GTNNAC 4 cut(s) 82, 929, 1217, 1266
Hpy188III TCNNGA 7 cut(s) 230, 485, 545, 835, 998, 1289, 1455
Hpy8I GTNNAC 4 cut(s) 82, 929, 1217, 1266
HpyAV CCTTC 4 cut(s) 400, 551, 625, 1267
HpyCH4III ACNGT 2 cut(s) 1129, 1147
HpyCH4IV ACGT 3 cut(s) 1299, 1373, 1451
HpyF3I CTNAG 5 cut(s) 486, 546, 687, 1056, 1119
HpySE526I ACGT 3 cut(s) 1299, 1373, 1451
Hsp92I GRCGYC 2 cut(s) 246, 255
Hsp92II CATG 4 cut(s) 187, 222, 711, 1435
HspAI GCGC 6 cut(s) 27, 93, 349, 711, 1259, 1437
Kpn2I TCCGGA 1 cut(s) 1454
Kzo9I GATC 2 cut(s) 1087, 1402
LmnI GCTCC 6 cut(s) 232, 238, 532, 557, 871, 907
Lsp1109I GCAGC 7 cut(s) 16, 19, 322, 443, 1015, 1048, 1081
LweI GCATC 3 cut(s) 584, 643, 1397
MaeI CTAG 1 cut(s) 354
MaeII ACGT 3 cut(s) 1299, 1373, 1451
MaeIII GTNAC 2 cut(s) 131, 748
MalI GATC 2 cut(s) 1089, 1404
MboI GATC 2 cut(s) 1087, 1402
MboII GAAGA 2 cut(s) 182, 1204
MfeI CAATTG 3 cut(s) 1023, 1044, 1239
MhlI GDGCHC 3 cut(s) 243, 418, 562
MlsI TGGCCA 1 cut(s) 223
MluNI TGGCCA 1 cut(s) 223
MlyI GAGTC 4 cut(s) 98, 580, 1089, 1143
MmeI TCCRAC 3 cut(s) 141, 171, 554
Mox20I TGGCCA 1 cut(s) 223
MroI TCCGGA 1 cut(s) 1454
MroXI GAANNNNTTC 1 cut(s) 540
MscI TGGCCA 1 cut(s) 223
MseI TTAA 3 cut(s) 621, 861, 1302
Msp20I TGGCCA 1 cut(s) 223
MspI CCGG 6 cut(s) 141, 243, 252, 923, 1091, 1455
MspR9I CCNGG 6 cut(s) 142, 243, 252, 399, 924, 1416
MunI CAATTG 3 cut(s) 1023, 1044, 1239
Mva1269I GAATGC 1 cut(s) 713
MvaI CCWGG 2 cut(s) 399, 1416
MvnI CGCG 1 cut(s) 93
NciI CCSGG 4 cut(s) 142, 243, 252, 924
NdeII GATC 2 cut(s) 1087, 1402
NlaIII CATG 4 cut(s) 187, 222, 711, 1435
NlaIV GGNNCC 6 cut(s) 145, 240, 301, 483, 516, 867
NmuCI GTSAC 1 cut(s) 748
NsbI TGCGCA 1 cut(s) 712
PaqCI CACCTGC 1 cut(s) 1463
PctI GAATGC 1 cut(s) 713
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 2 cut(s) 205, 495
PflMI CCANNNNNTGG 1 cut(s) 1415
PleI GAGTC 4 cut(s) 98, 580, 1088, 1142
PmaCI CACGTG 1 cut(s) 1374
PmlI CACGTG 1 cut(s) 1374
PpsI GAGTC 4 cut(s) 98, 580, 1088, 1142
Ppu21I YACGTR 1 cut(s) 1374
PsiI TTATAA 1 cut(s) 581
Psp1406I AACGTT 1 cut(s) 1299
Psp6I CCWGG 2 cut(s) 397, 1414
PspCI CACGTG 1 cut(s) 1374
PspGI CCWGG 2 cut(s) 397, 1414
PspN4I GGNNCC 6 cut(s) 145, 240, 301, 483, 516, 867
PspPI GGNCC 2 cut(s) 144, 1139
PstI CTGCAG 1 cut(s) 1066
SalI GTCGAC 1 cut(s) 1264
SaqAI TTAA 3 cut(s) 621, 861, 1302
Sau3AI GATC 2 cut(s) 1087, 1402
Sau96I GGNCC 2 cut(s) 144, 1139
SchI GAGTC 4 cut(s) 98, 580, 1089, 1143
ScrFI CCNGG 6 cut(s) 142, 243, 252, 399, 924, 1416
SduI GDGCHC 3 cut(s) 243, 418, 562
SfaNI GCATC 3 cut(s) 584, 643, 1397
SfcI CTRYAG 1 cut(s) 1062
SinI GGWCC 1 cut(s) 144
SspMI CTAG 1 cut(s) 354
StyD4I CCNGG 6 cut(s) 140, 241, 250, 397, 922, 1414
StyI CCWWGG 1 cut(s) 903
TaaI ACNGT 2 cut(s) 1129, 1147
TaiI ACGT 3 cut(s) 1302, 1376, 1454
TaqI TCGA 2 cut(s) 1265, 1401
TauI GCSGC 5 cut(s) 56, 65, 68, 199, 987
TfiI GAWTC 2 cut(s) 205, 495
Tru1I TTAA 3 cut(s) 621, 861, 1302
Tru9I TTAA 3 cut(s) 621, 861, 1302
TscAI CASTG 1 cut(s) 1284
TseFI GTSAC 1 cut(s) 748
TseI GCWGC 7 cut(s) 29, 32, 335, 456, 1028, 1061, 1094
Tsp45I GTSAC 1 cut(s) 748
TspDTI ATGAA 4 cut(s) 752, 864, 1205, 1220
TspGWI ACGGA 2 cut(s) 67, 119
TspRI CASTG 1 cut(s) 1284
Van91I CCANNNNNTGG 1 cut(s) 1415
VpaK11BI GGWCC 1 cut(s) 144
XapI RAATTY 7 cut(s) 443, 461, 599, 740, 758, 1226, 1397
XmiI GTMKAC 2 cut(s) 81, 1265
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.