Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Forward (+)

16977126 .. 16982759

Gene Structure 5634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG162400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAATCTTCAGTTCAATCAATTTGCATCCAACAAACTCAGGGCACCAGGTCCTCCTCCTCCTCATCTTCTTATACTCAAATCATCAATGGCGAGCCATCTCTTCACCTACGGCGCGTCCCAATCAGCTCCAGCTCCCACTCCTGCTCTCTCCACCGTCTACACCCCCCGCTCCCTAGCGCAATCCTACCTCTCCGACCCGACCCACCGCTACCTTTCCGGGTCGGACCCTCTCTCCAATTCCTCCATGTACCTCGCCGGCACCGACGGCCTCGGCGCTTACTCCGACGCCGCCAGAGCGACGTCGTATATGATGTCCTCCTGGCCCGCCCCCGATGCCGAACTCGGCCCGCCCGGCTTCAAACGCACCTCTGAAGCACTCTACCATCAGGCTCTTTTGGGTGCCCATAATCCGATTGGGCAAATGGAAGCTTGGTATTCAACAAATTCTTTAGCAAAGCGACCTAGATTCGAGAATACAAGCTTGCCTATTTATCCACAGAGGCCAGGAGAGAAAGATTGTGTCCACTATATGCAAACAAGAACCTGTAAATTTGGAGAGTGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGATGGTGGAATCCAAGATTGGAAAGAGGTTCCACTTGTTGCTCCAAGTGAGTCCCTTCCCGAGAGACCTGGAGCGCCAGATTGTCCATACTTTTTAAAAACTCAAAGATGCAAGTTTGTTCTTAGATGCAAGTTTAATCATCCAAAGGACAAACTGGCCACTGCGGGCGCTTCAGAAAATGGTGATGTTTATGCCTTACCCGAGAGGCCTTCTGAACCTGCATGTGCATACTATATGAAGACTGGGGAATGTAAGTATGGTGCACAATGCAGATTCCATCATCCGATTGATAGGCCAGCAGTGGCGTTGTCAACAACAAAGCCATCTCAACAAGAAAATGTGAAGCTAACGCTTGCTGGACTTCCTAGGAGAGAGGGTGCCGTTATCTGTGTGTATTACCTTAAAACCGGCACATGCAAGTATGGTGCAACCTGCAGATTTGACCACCCACCTCCTGGGGAAGTTGTAGCAATGGCTGCTTCACAAGCAAAATCTGATTCTACTGGAGGAAAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

370

Amino Acids

40.42

Weight (kDa)

8.77

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	222 - 247	2.9e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	270 - 293	7.5e-11	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	326 - 349	3.3e-09	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4	PF18345	328 - 347	7.5e-07	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	305
Acc36I	ACCTGC	2 cut(s)	820, 1034
AccB1I	GGYRCC	4 cut(s)	43, 260, 401, 971
AccB7I	CCANNNNNTGG	1 cut(s)	1049
AccBSI	CCGCTC	1 cut(s)	171
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	1 cut(s)	116
AciI	CCGC	6 cut(s)	169, 208, 291, 327, 350, 758
AcoI	YGGCCR	1 cut(s)	750
AcsI	RAATTY	2 cut(s)	445, 551
AcuI	CTGAAG	2 cut(s)	393, 750
AcyI	GRCGYC	2 cut(s)	288, 302
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	2 cut(s)	599, 1049
AgsI	TTSAA	3 cut(s)	16, 361, 441
AjnI	CCWGG	5 cut(s)	46, 320, 505, 661, 1048
AjuI	GAANNNNNNNTTGG	2 cut(s)	595, 627
AluBI	AGCT	5 cut(s)	128, 134, 431, 483, 940
AluI	AGCT	5 cut(s)	128, 134, 431, 483, 940
Alw21I	GWGCWC	1 cut(s)	859
Alw26I	GTCTC	1 cut(s)	652
Alw44I	GTGCAC	1 cut(s)	855
Ama87I	CYCGRG	2 cut(s)	653, 794
AoxI	GGCC	7 cut(s)	268, 323, 346, 503, 750, 800, 887
ApaLI	GTGCAC	1 cut(s)	855
ApeKI	GCWGC	2 cut(s)	564, 1070
ApoI	RAATTY	2 cut(s)	445, 551
AspA2I	CCTAGG	1 cut(s)	959
AspLEI	GCGC	5 cut(s)	116, 181, 278, 670, 764
AspS9I	GGNCC	4 cut(s)	50, 226, 324, 347
AsuC2I	CCSGG	2 cut(s)	220, 354
AsuHPI	GGTGA	2 cut(s)	97, 788
AvaI	CYCGRG	2 cut(s)	653, 794
AvaII	GGWCC	2 cut(s)	50, 226
AvrII	CCTAGG	1 cut(s)	959
BaeGI	GKGCMC	3 cut(s)	46, 406, 859
BalI	TGGCCA	1 cut(s)	752
BanI	GGYRCC	4 cut(s)	43, 260, 401, 971
BbsI	GAAGAC	1 cut(s)	839
Bbv12I	GWGCWC	1 cut(s)	859
BbvI	GCAGC	2 cut(s)	551, 1057
BccI	CCATC	6 cut(s)	105, 393, 585, 590, 879, 925
BceAI	ACGGC	3 cut(s)	127, 283, 959
BciT130I	CCWGG	5 cut(s)	48, 322, 507, 663, 1050
BcnI	CCSGG	2 cut(s)	220, 354
BcoDI	GTCTC	1 cut(s)	652
BfaI	CTAG	3 cut(s)	176, 465, 960
BfmI	CTRYAG	1 cut(s)	1027
BfoI	RGCGCY	3 cut(s)	279, 671, 765
BfuAI	ACCTGC	2 cut(s)	820, 1034
BglI	GCCNNNNNGGC	1 cut(s)	354
BisI	GCNGC	3 cut(s)	291, 565, 1071
BlnI	CCTAGG	1 cut(s)	959
BlsI	GCNGC	3 cut(s)	292, 566, 1072
Bme1390I	CCNGG	7 cut(s)	48, 220, 322, 354, 507, 663, 1050
Bme18I	GGWCC	2 cut(s)	50, 226
BmeT110I	CYCGRG	2 cut(s)	653, 794
BmgT120I	GGNCC	4 cut(s)	50, 226, 324, 347
BmiI	GGNNCC	7 cut(s)	45, 228, 262, 403, 591, 624, 973
BmrFI	CCNGG	7 cut(s)	48, 220, 322, 354, 507, 663, 1050
BmrI	ACTGGG	1 cut(s)	846
BmsI	GCATC	4 cut(s)	35, 325, 692, 710
BmuI	ACTGGG	1 cut(s)	846
BpiI	GAAGAC	1 cut(s)	839
BpmI	CTGGAG	2 cut(s)	114, 684
BpuMI	CCSGG	2 cut(s)	220, 354
BsaHI	GRCGYC	2 cut(s)	288, 302
BsaI	GGTCTC	1 cut(s)	652
BsaJI	CCNNGG	3 cut(s)	271, 959, 1049
BsaXI	ACNNNNNCTCC	4 cut(s)	218, 248, 955, 985
Bsc4I	CCNNNNNNNGG	2 cut(s)	599, 1049
Bse118I	RCCGGY	2 cut(s)	257, 1001
Bse1I	ACTGG	3 cut(s)	753, 841, 1102
Bse3DI	GCAATG	1 cut(s)	1071
BseBI	CCWGG	5 cut(s)	48, 322, 507, 663, 1050
BseDI	CCNNGG	3 cut(s)	271, 959, 1049
BseGI	GGATG	4 cut(s)	26, 577, 733, 874
BseLI	CCNNNNNNNGG	2 cut(s)	599, 1049
BseMI	GCAATG	1 cut(s)	1071
BseMII	CTCAG	1 cut(s)	52
BseNI	ACTGG	3 cut(s)	753, 841, 1102
BseRI	GAGGAG	3 cut(s)	45, 48, 51
BseSI	GKGCMC	3 cut(s)	46, 406, 859
BseXI	GCAGC	2 cut(s)	551, 1057
Bsh1236I	CGCG	1 cut(s)	116
BshFI	GGCC	7 cut(s)	270, 325, 348, 505, 752, 802, 889
BshNI	GGYRCC	4 cut(s)	43, 260, 401, 971
BsiHKAI	GWGCWC	1 cut(s)	859
BsiHKCI	CYCGRG	2 cut(s)	653, 794
BsiSI	CCGG	4 cut(s)	219, 258, 354, 1002
BslFI	GGGAC	2 cut(s)	103, 631
BslI	CCNNNNNNNGG	2 cut(s)	599, 1049
BsmAI	GTCTC	1 cut(s)	652
BsmFI	GGGAC	2 cut(s)	103, 631
BsnI	GGCC	7 cut(s)	270, 325, 348, 505, 752, 802, 889
Bso31I	GGTCTC	1 cut(s)	652
BsoBI	CYCGRG	2 cut(s)	653, 794
Bsp1286I	GDGCHC	3 cut(s)	46, 406, 859
BspACI	CCGC	6 cut(s)	169, 208, 291, 327, 350, 758
BspANI	GGCC	7 cut(s)	270, 325, 348, 505, 752, 802, 889
BspCNI	CTCAG	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	7 cut(s)	45, 228, 262, 403, 591, 624, 973
BspMAI	CTGCAG	1 cut(s)	1031
BspMI	ACCTGC	2 cut(s)	820, 1034
BspT107I	GGYRCC	4 cut(s)	43, 260, 401, 971
BspTNI	GGTCTC	1 cut(s)	652
BsrBI	CCGCTC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	1071
BsrFI	RCCGGY	2 cut(s)	257, 1001
BsrI	ACTGG	3 cut(s)	753, 841, 1102
BssAI	RCCGGY	2 cut(s)	257, 1001
BssECI	CCNNGG	3 cut(s)	271, 959, 1049
BssNI	GRCGYC	2 cut(s)	288, 302
BssT1I	CCWWGG	1 cut(s)	959
Bst2UI	CCWGG	5 cut(s)	48, 322, 507, 663, 1050
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	1 cut(s)	107
BstACI	GRCGYC	2 cut(s)	288, 302
BstAPI	GCANNNNNTGC	1 cut(s)	1070
BstC8I	GCNNGC	8 cut(s)	94, 259, 327, 350, 485, 760, 891, 948
BstDEI	CTNAG	2 cut(s)	38, 716
BstF5I	GGATG	4 cut(s)	26, 577, 733, 874
BstFNI	CGCG	1 cut(s)	116
BstH2I	RGCGCY	3 cut(s)	279, 671, 765
BstHHI	GCGC	5 cut(s)	116, 181, 278, 670, 764
BstMAI	GTCTC	1 cut(s)	652
BstMWI	GCNNNNNNNGC	7 cut(s)	267, 296, 335, 354, 363, 1070, 1079
BstNI	CCWGG	5 cut(s)	48, 322, 507, 663, 1050
BstNSI	RCATGY	2 cut(s)	819, 1011
BstSCI	CCNGG	7 cut(s)	46, 218, 320, 352, 505, 661, 1048
BstSFI	CTRYAG	1 cut(s)	1027
BstSLI	GKGCMC	3 cut(s)	46, 406, 859
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	2 cut(s)	551, 1057
BstV2I	GAAGAC	1 cut(s)	839
BsuRI	GGCC	7 cut(s)	270, 325, 348, 505, 752, 802, 889
BtsCI	GGATG	4 cut(s)	26, 577, 733, 874
BtsI	GCAGTG	2 cut(s)	753, 900
BtsIMutI	CAGTG	2 cut(s)	753, 900
BveI	ACCTGC	2 cut(s)	820, 1034
Cac8I	GCNNGC	8 cut(s)	94, 259, 327, 350, 485, 760, 891, 948
CfoI	GCGC	5 cut(s)	116, 181, 278, 670, 764
Cfr10I	RCCGGY	2 cut(s)	257, 1001
Cfr13I	GGNCC	4 cut(s)	50, 226, 324, 347
CseI	GACGC	2 cut(s)	105, 296
CsiI	ACCWGGT	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	3 cut(s)	247, 816, 1008
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	2 cut(s)	38, 716
DraI	TTTAAA	1 cut(s)	690
EaeI	YGGCCR	1 cut(s)	750
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	959
Eco147I	AGGCCT	1 cut(s)	802
Eco31I	GGTCTC	1 cut(s)	652
Eco47I	GGWCC	2 cut(s)	50, 226
Eco57I	CTGAAG	2 cut(s)	393, 750
Eco88I	CYCGRG	2 cut(s)	653, 794
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	5 cut(s)	46, 320, 505, 661, 1048
EcoT14I	CCWWGG	1 cut(s)	959
ErhI	CCWWGG	1 cut(s)	959
FaeI	CATG	3 cut(s)	250, 819, 1011
FaqI	GGGAC	2 cut(s)	103, 631
FatI	CATG	3 cut(s)	246, 815, 1007
FauI	CCCGC	4 cut(s)	176, 334, 357, 751
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	3 cut(s)	291, 565, 1071
FokI	GGATG	4 cut(s)	13, 564, 720, 861
Fsp4HI	GCNGC	3 cut(s)	291, 565, 1071
FspBI	CTAG	3 cut(s)	176, 465, 960
GlaI	GCGC	5 cut(s)	115, 180, 277, 669, 763
GluI	GCNGC	3 cut(s)	291, 565, 1071
GsuI	CTGGAG	2 cut(s)	114, 684
HaeII	RGCGCY	3 cut(s)	279, 671, 765
HaeIII	GGCC	7 cut(s)	270, 325, 348, 505, 752, 802, 889
HapII	CCGG	4 cut(s)	219, 258, 354, 1002
HgaI	GACGC	2 cut(s)	105, 296
HhaI	GCGC	5 cut(s)	116, 181, 278, 670, 764
Hin1I	GRCGYC	2 cut(s)	288, 302
Hin1II	CATG	3 cut(s)	250, 819, 1011
Hin6I	GCGC	5 cut(s)	114, 179, 276, 668, 762
HinP1I	GCGC	5 cut(s)	114, 179, 276, 668, 762
HincII	GTYRAC	1 cut(s)	906
HindII	GTYRAC	1 cut(s)	906
HindIII	AAGCTT	2 cut(s)	429, 481
HinfI	GANTC	6 cut(s)	4, 468, 603, 644, 867, 1091
HpaII	CCGG	4 cut(s)	219, 258, 354, 1002
HphI	GGTGA	2 cut(s)	97, 788
Hpy166II	GTNNAC	4 cut(s)	160, 526, 857, 906
Hpy188I	TCNGA	9 cut(s)	196, 226, 286, 373, 414, 769, 808, 879, 1090
Hpy188III	TCNNGA	3 cut(s)	472, 593, 653
Hpy8I	GTNNAC	4 cut(s)	160, 526, 857, 906
Hpy99I	CGWCG	4 cut(s)	269, 290, 304, 307
HpyAV	CCTTC	2 cut(s)	659, 813
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	302
HpyF10VI	GCNNNNNNNGC	7 cut(s)	267, 296, 335, 354, 363, 1070, 1079
HpyF3I	CTNAG	2 cut(s)	38, 716
HpySE526I	ACGT	1 cut(s)	302
Hsp92I	GRCGYC	2 cut(s)	288, 302
Hsp92II	CATG	3 cut(s)	250, 819, 1011
HspAI	GCGC	5 cut(s)	114, 179, 276, 668, 762
KroI	GCCGGC	1 cut(s)	257
KroNI	GCCGGC	1 cut(s)	259
LmnI	GCTCC	5 cut(s)	133, 139, 176, 640, 665
Lsp1109I	GCAGC	2 cut(s)	551, 1057
LweI	GCATC	4 cut(s)	35, 325, 692, 710
MabI	ACCWGGT	1 cut(s)	46
MaeI	CTAG	3 cut(s)	176, 465, 960
MaeII	ACGT	1 cut(s)	302
MbiI	CCGCTC	1 cut(s)	171
MboII	GAAGA	3 cut(s)	59, 94, 844
MhlI	GDGCHC	3 cut(s)	46, 406, 859
MlsI	TGGCCA	1 cut(s)	752
MluCI	AATT	4 cut(s)	20, 238, 445, 551
MluNI	TGGCCA	1 cut(s)	752
MlyI	GAGTC	1 cut(s)	653
MmeI	TCCRAC	4 cut(s)	54, 204, 219, 309
Mox20I	TGGCCA	1 cut(s)	752
MroNI	GCCGGC	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	752
MseI	TTAA	3 cut(s)	689, 729, 996
Msp20I	TGGCCA	1 cut(s)	752
MspI	CCGG	4 cut(s)	219, 258, 354, 1002
MspR9I	CCNGG	7 cut(s)	48, 220, 322, 354, 507, 663, 1050
MvaI	CCWGG	5 cut(s)	48, 322, 507, 663, 1050
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	7 cut(s)	267, 296, 335, 354, 363, 1070, 1079
NaeI	GCCGGC	1 cut(s)	259
NciI	CCSGG	2 cut(s)	220, 354
NgoMIV	GCCGGC	1 cut(s)	257
NlaIII	CATG	3 cut(s)	250, 819, 1011
NlaIV	GGNNCC	7 cut(s)	45, 228, 262, 403, 591, 624, 973
NmeAIII	GCCGAG	2 cut(s)	252, 324
NspI	RCATGY	2 cut(s)	819, 1011
PceI	AGGCCT	1 cut(s)	802
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PdiI	GCCGGC	1 cut(s)	259
PfeI	GAWTC	5 cut(s)	4, 468, 603, 867, 1091
PflMI	CCANNNNNTGG	1 cut(s)	1049
PkrI	GCNGC	3 cut(s)	292, 566, 1072
PleI	GAGTC	1 cut(s)	652
PpsI	GAGTC	1 cut(s)	652
PpuMI	RGGWCCY	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	5 cut(s)	46, 320, 505, 661, 1048
PspGI	CCWGG	5 cut(s)	46, 320, 505, 661, 1048
PspN4I	GGNNCC	7 cut(s)	45, 228, 262, 403, 591, 624, 973
PspPI	GGNCC	4 cut(s)	50, 226, 324, 347
PspPPI	RGGWCCY	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	1031
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SaqAI	TTAA	3 cut(s)	689, 729, 996
SatI	GCNGC	3 cut(s)	291, 565, 1071
Sau96I	GGNCC	4 cut(s)	50, 226, 324, 347
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	7 cut(s)	48, 220, 322, 354, 507, 663, 1050
SduI	GDGCHC	3 cut(s)	46, 406, 859
SexAI	ACCWGGT	1 cut(s)	46
SfaNI	GCATC	4 cut(s)	35, 325, 692, 710
SfcI	CTRYAG	1 cut(s)	1027
SinI	GGWCC	2 cut(s)	50, 226
Sse9I	AATT	4 cut(s)	20, 238, 445, 551
SseBI	AGGCCT	1 cut(s)	802
SsiI	CCGC	6 cut(s)	169, 208, 291, 327, 350, 758
SspMI	CTAG	3 cut(s)	176, 465, 960
StuI	AGGCCT	1 cut(s)	802
StyD4I	CCNGG	7 cut(s)	46, 218, 320, 352, 505, 661, 1048
StyI	CCWWGG	1 cut(s)	959
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	1 cut(s)	471
TasI	AATT	4 cut(s)	20, 238, 445, 551
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	5 cut(s)	4, 468, 603, 867, 1091
Tru1I	TTAA	3 cut(s)	689, 729, 996
Tru9I	TTAA	3 cut(s)	689, 729, 996
TscAI	CASTG	2 cut(s)	760, 900
TseI	GCWGC	2 cut(s)	564, 1070
TspDTI	ATGAA	2 cut(s)	17, 845
TspRI	CASTG	2 cut(s)	760, 900
Van91I	CCANNNNNTGG	1 cut(s)	1049
VneI	GTGCAC	1 cut(s)	855
VpaK11BI	GGWCC	2 cut(s)	50, 226
XapI	RAATTY	2 cut(s)	445, 551
XceI	RCATGY	2 cut(s)	819, 1011
XcmI	CCANNNNNNNNNTGG	2 cut(s)	413, 1046
XmaJI	CCTAGG	1 cut(s)	959
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	3 cut(s)	176, 465, 960
ZraI	GACGTC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.