Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Reverse (-)

6477859 .. 6481675

Gene Structure 3817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0075100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAGGCCGAAGATTTACCTTTTTGGTGATTCGATCACGGAGGAGTCGTTCGGCGACGGTGGCTGGGGTGCTTCTCTTGCCCACCAATTCTCTCGCACGGTTGATGTGGTGCTGAGAGGTTATAGCGGGTACAACACTCGGTGGGCTCAGAAGGTTCTGGAGAGGGTTTTTCCGGGGAGTCAAGACGGCGGCGGTGAAGCGCCTTTAGCTGTCACCGTCTTCTTCGGCGCTAATGACGCTTGCCTTCCCGATAGATGCTCTGGTTTTCAGCACGTGCCGGTTGACGAGTACAAGCAGAACCTCCGCTCCATTGTCTCCTTCCTCAAGCAATGGCCTACTACTCACATTATTCTCATCACACCTCCTCCAATTGATGAAGATGGACGCCTTCAATTTCCCTATATTGAGAATCCATTGAATCAGCCCGAGAGGACAAATGAAGCTGCTGGTGCTTTTGCAGAGGCTTGTGTCGCCGTAGCTCGAGAAAGTGGTCTTCCAGTAATAGATCTCTGGACCAAAATGCAGCAGTTTCCTGACTGGCAGAAAGCTCATCTAAGGGATGGTTTGCACCTTACTCCGCGGGGAAACAGACTCGTTTTTGAGGAAGTGGTTGCGAAGCTGAGGGATGAAGGATTGAGTCTAGAAAGTTTGCCAGTTGATCTCCCACTTATAGCTGATATTGACCCTAATGACCCTCTTAAGGCTTTTCAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

238

Amino Acids

26.53

Weight (kDa)

5.06

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	5 - 203	1.5e-30	GDSL-like Lipase/Acylhydrolase
Lipase_GDSL_2	PF13472	7 - 198	5.3e-29	GDSL-like Lipase/Acylhydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	306
AccII	CGCG	1 cut(s)	580
AciI	CCGC	6 cut(s)	126, 189, 192, 304, 578, 580
AcvI	CACGTG	1 cut(s)	274
AcyI	GRCGYC	1 cut(s)	385
AdeI	CACNNNGTG	1 cut(s)	141
AfaI	GTAC	2 cut(s)	131, 290
AfiI	CCNNNNNNNGG	1 cut(s)	700
AflII	CTTAAG	1 cut(s)	698
AgsI	TTSAA	2 cut(s)	392, 418
AloI	GAACNNNNNNTCC	4 cut(s)	32, 64, 290, 322
AluBI	AGCT	6 cut(s)	209, 443, 479, 548, 619, 674
AluI	AGCT	6 cut(s)	209, 443, 479, 548, 619, 674
Alw26I	GTCTC	1 cut(s)	319
Ama87I	CYCGRG	2 cut(s)	425, 480
AoxI	GGCC	2 cut(s)	5, 332
ApeKI	GCWGC	2 cut(s)	443, 523
AspLEI	GCGC	2 cut(s)	202, 230
AspS9I	GGNCC	1 cut(s)	513
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	3 cut(s)	38, 205, 206
AvaI	CYCGRG	2 cut(s)	425, 480
AvaII	GGWCC	1 cut(s)	513
BanII	GRGCYC	1 cut(s)	148
BbrPI	CACGTG	1 cut(s)	274
BbsI	GAAGAC	2 cut(s)	211, 485
BbvCI	CCTCAGC	1 cut(s)	620
BbvI	GCAGC	2 cut(s)	430, 535
BccI	CCATC	2 cut(s)	374, 554
BceAI	ACGGC	2 cut(s)	202, 458
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	1 cut(s)	641
BfoI	RGCGCY	2 cut(s)	203, 231
BfrI	CTTAAG	1 cut(s)	698
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	3 cut(s)	190, 444, 524
BlsI	GCNGC	3 cut(s)	191, 445, 525
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	513
BmeT110I	CYCGRG	2 cut(s)	425, 480
BmgT120I	GGNCC	1 cut(s)	513
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	1 cut(s)	245
BpiI	GAAGAC	2 cut(s)	211, 485
BpmI	CTGGAG	1 cut(s)	179
Bpu10I	CCTNAGC	1 cut(s)	620
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	174
BsaAI	YACGTR	1 cut(s)	274
BsaHI	GRCGYC	1 cut(s)	385
BsaJI	CCNNGG	2 cut(s)	173, 578
BsaXI	ACNNNNNCTCC	6 cut(s)	32, 62, 290, 320, 349, 379
Bsc4I	CCNNNNNNNGG	1 cut(s)	700
Bse118I	RCCGGY	1 cut(s)	277
Bse1I	ACTGG	3 cut(s)	497, 542, 653
Bse3DI	GCAATG	1 cut(s)	335
BseDI	CCNNGG	2 cut(s)	173, 578
BseGI	GGATG	2 cut(s)	565, 631
BseLI	CCNNNNNNNGG	1 cut(s)	700
BseMI	GCAATG	1 cut(s)	335
BseMII	CTCAG	3 cut(s)	104, 161, 611
BseNI	ACTGG	3 cut(s)	497, 542, 653
BseRI	GAGGAG	2 cut(s)	56, 354
BseXI	GCAGC	2 cut(s)	430, 535
BseYI	CCCAGC	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	580
BshFI	GGCC	2 cut(s)	7, 334
BsiHKCI	CYCGRG	2 cut(s)	425, 480
BsiSI	CCGG	2 cut(s)	173, 278
BslI	CCNNNNNNNGG	1 cut(s)	700
BsmAI	GTCTC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	7, 334
BsoBI	CYCGRG	2 cut(s)	425, 480
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	33, 505, 658
BspACI	CCGC	6 cut(s)	126, 189, 192, 304, 578, 580
BspANI	GGCC	2 cut(s)	7, 334
BspCNI	CTCAG	3 cut(s)	105, 160, 612
BspFNI	CGCG	1 cut(s)	580
BspTI	CTTAAG	1 cut(s)	698
BsrBI	CCGCTC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	335
BsrFI	RCCGGY	1 cut(s)	277
BsrI	ACTGG	3 cut(s)	497, 542, 653
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	2 cut(s)	173, 578
BssMI	GATC	3 cut(s)	33, 505, 658
BssNI	GRCGYC	1 cut(s)	385
Bst4CI	ACNGT	3 cut(s)	59, 100, 217
BstACI	GRCGYC	1 cut(s)	385
BstAFI	CTTAAG	1 cut(s)	698
BstBAI	YACGTR	1 cut(s)	274
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	4 cut(s)	113, 147, 554, 620
BstDSI	CCRYGG	1 cut(s)	578
BstF5I	GGATG	2 cut(s)	565, 631
BstFNI	CGCG	1 cut(s)	580
BstH2I	RGCGCY	2 cut(s)	203, 231
BstHHI	GCGC	2 cut(s)	202, 230
BstKTI	GATC	3 cut(s)	36, 508, 661
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	3 cut(s)	33, 505, 658
BstMWI	GCNNNNNNNGC	6 cut(s)	60, 77, 206, 236, 449, 470
BstSCI	CCNGG	1 cut(s)	172
BstUI	CGCG	1 cut(s)	580
BstV1I	GCAGC	2 cut(s)	430, 535
BstV2I	GAAGAC	2 cut(s)	211, 485
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BsuRI	GGCC	2 cut(s)	7, 334
BtgI	CCRYGG	1 cut(s)	578
BtsCI	GGATG	2 cut(s)	565, 631
Cac8I	GCNNGC	1 cut(s)	241
CfoI	GCGC	2 cut(s)	202, 230
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	513
Cfr42I	CCGCGG	1 cut(s)	581
CseI	GACGC	2 cut(s)	245, 393
Csp6I	GTAC	2 cut(s)	130, 289
CviQI	GTAC	2 cut(s)	130, 289
DdeI	CTNAG	4 cut(s)	113, 147, 554, 620
DpnI	GATC	3 cut(s)	35, 507, 660
DpnII	GATC	3 cut(s)	33, 505, 658
DraIII	CACNNNGTG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	513
Eco72I	CACGTG	1 cut(s)	274
Eco88I	CYCGRG	2 cut(s)	425, 480
EcoT38I	GRGCYC	1 cut(s)	148
FaiI	YATR	3 cut(s)	123, 402, 671
FauI	CCCGC	2 cut(s)	119, 573
Fnu4HI	GCNGC	3 cut(s)	190, 444, 524
FokI	GGATG	2 cut(s)	572, 638
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	3 cut(s)	190, 444, 524
FspBI	CTAG	1 cut(s)	641
GlaI	GCGC	2 cut(s)	201, 229
GluI	GCNGC	3 cut(s)	190, 444, 524
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	1 cut(s)	179
HaeII	RGCGCY	2 cut(s)	203, 231
HaeIII	GGCC	2 cut(s)	7, 334
HapII	CCGG	2 cut(s)	173, 278
HgaI	GACGC	2 cut(s)	245, 393
HhaI	GCGC	2 cut(s)	202, 230
Hin1I	GRCGYC	1 cut(s)	385
Hin6I	GCGC	2 cut(s)	200, 228
HinP1I	GCGC	2 cut(s)	200, 228
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	7 cut(s)	29, 44, 178, 409, 418, 591, 637
HpaII	CCGG	2 cut(s)	173, 278
HphI	GGTGA	3 cut(s)	38, 205, 206
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	2 cut(s)	150, 711
Hpy188III	TCNNGA	7 cut(s)	158, 182, 248, 482, 511, 533, 641
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	5 cut(s)	145, 254, 328, 398, 623
HpyCH4III	ACNGT	3 cut(s)	59, 100, 217
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	3 cut(s)	458, 523, 568
HpyF10VI	GCNNNNNNNGC	6 cut(s)	60, 77, 206, 236, 449, 470
HpyF3I	CTNAG	4 cut(s)	113, 147, 554, 620
HpySE526I	ACGT	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	385
HspAI	GCGC	2 cut(s)	200, 228
KspI	CCGCGG	1 cut(s)	581
Kzo9I	GATC	3 cut(s)	33, 505, 658
LmnI	GCTCC	1 cut(s)	311
Lsp1109I	GCAGC	2 cut(s)	430, 535
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	1 cut(s)	641
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	3 cut(s)	35, 507, 660
MbiI	CCGCTC	1 cut(s)	306
MboI	GATC	3 cut(s)	33, 505, 658
MboII	GAAGA	5 cut(s)	22, 211, 214, 389, 485
MfeI	CAATTG	1 cut(s)	369
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	3 cut(s)	86, 369, 392
MlyI	GAGTC	4 cut(s)	53, 187, 585, 646
MseI	TTAA	1 cut(s)	699
MspA1I	CMGCKG	1 cut(s)	580
MspCI	CTTAAG	1 cut(s)	698
MspI	CCGG	2 cut(s)	173, 278
MspR9I	CCNGG	1 cut(s)	174
MunI	CAATTG	1 cut(s)	369
MvnI	CGCG	1 cut(s)	580
MwoI	GCNNNNNNNGC	6 cut(s)	60, 77, 206, 236, 449, 470
NciI	CCSGG	1 cut(s)	174
NdeII	GATC	3 cut(s)	33, 505, 658
NmuCI	GTSAC	1 cut(s)	211
PaeR7I	CTCGAG	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PfeI	GAWTC	3 cut(s)	29, 409, 418
PkrI	GCNGC	3 cut(s)	191, 445, 525
PleI	GAGTC	4 cut(s)	52, 186, 585, 645
PmaCI	CACGTG	1 cut(s)	274
PmlI	CACGTG	1 cut(s)	274
PpsI	GAGTC	4 cut(s)	52, 186, 585, 645
Ppu21I	YACGTR	1 cut(s)	274
PspCI	CACGTG	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	513
PsuI	RGATCY	1 cut(s)	505
RsaI	GTAC	2 cut(s)	131, 290
RsaNI	GTAC	2 cut(s)	130, 289
SacII	CCGCGG	1 cut(s)	581
SaqAI	TTAA	1 cut(s)	699
SatI	GCNGC	3 cut(s)	190, 444, 524
Sau3AI	GATC	3 cut(s)	33, 505, 658
Sau96I	GGNCC	1 cut(s)	513
SchI	GAGTC	4 cut(s)	53, 187, 585, 646
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	245
Sfr274I	CTCGAG	1 cut(s)	480
Sfr303I	CCGCGG	1 cut(s)	581
SgrBI	CCGCGG	1 cut(s)	581
SinI	GGWCC	1 cut(s)	513
SlaI	CTCGAG	1 cut(s)	480
SmlI	CTYRAG	3 cut(s)	323, 480, 698
SmoI	CTYRAG	3 cut(s)	323, 480, 698
Sse9I	AATT	3 cut(s)	86, 369, 392
SsiI	CCGC	6 cut(s)	126, 189, 192, 304, 578, 580
SspMI	CTAG	1 cut(s)	641
StyD4I	CCNGG	1 cut(s)	172
TaaI	ACNGT	3 cut(s)	59, 100, 217
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	2 cut(s)	32, 481
TasI	AATT	3 cut(s)	86, 369, 392
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	3 cut(s)	29, 409, 418
Tru1I	TTAA	1 cut(s)	699
Tru9I	TTAA	1 cut(s)	699
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	2 cut(s)	443, 523
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	3 cut(s)	390, 453, 642
TspGWI	ACGGA	1 cut(s)	53
Vha464I	CTTAAG	1 cut(s)	698
VpaK11BI	GGWCC	1 cut(s)	513
XbaI	TCTAGA	1 cut(s)	640
XhoI	CTCGAG	1 cut(s)	480
XspI	CTAG	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.