Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Reverse (-)

16658408 .. 16672521

Gene Structure 14114 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30252

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGAAGATTGGGGAATGTAAGTATGGTGCACAATGCAGATTCCATTACCCGATTGATAGGCCAGCAGTGGCGTTGTCAACAACAAAGCCATCTCAACAAGAAAATGTGAAGCTAACGCTTGCTGGACTACCTAGGAGGGAGGGTGCCGCTATCTGTGTGTATTACCTTCAAACCGGCACATGCAAGTATGGTGCAACCTGCAGATTTGACCACCCATCTCCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

75

Amino Acids

8.31

Weight (kDa)

9.12

Isoelectric Point (pI)

49.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	50 - 72	8.5e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4	PF18345	52 - 71	3.8e-08	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	206
AccB1I	GGYRCC	1 cut(s)	143
AciI	CCGC	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	170
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
Alw21I	GWGCWC	1 cut(s)	31
Alw44I	GTGCAC	1 cut(s)	27
AoxI	GGCC	1 cut(s)	59
ApaLI	GTGCAC	1 cut(s)	27
AspA2I	CCTAGG	1 cut(s)	131
AvrII	CCTAGG	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	31
BccI	CCATC	2 cut(s)	97, 223
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	199
BfuAI	ACCTGC	1 cut(s)	206
BisI	GCNGC	1 cut(s)	147
BlnI	CCTAGG	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	131
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bse118I	RCCGGY	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	31
BshFI	GGCC	1 cut(s)	61
BshNI	GGYRCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	174
BsnI	GGCC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	31
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	145
BspMAI	CTGCAG	1 cut(s)	203
BspMI	ACCTGC	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	131
BstC8I	GCNNGC	2 cut(s)	63, 120
BstNSI	RCATGY	1 cut(s)	183
BstSFI	CTRYAG	1 cut(s)	199
BstSLI	GKGCMC	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	61
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	72
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	2 cut(s)	63, 120
Cfr10I	RCCGGY	1 cut(s)	173
CviAII	CATG	1 cut(s)	180
CviJI	RGCY	3 cut(s)	61, 88, 112
CviKI_1	RGCY	3 cut(s)	61, 88, 112
Eco130I	CCWWGG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	1 cut(s)	183
FaiI	YATR	3 cut(s)	24, 181, 189
FatI	CATG	1 cut(s)	179
Fnu4HI	GCNGC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	1 cut(s)	174
Hin1II	CATG	1 cut(s)	183
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HinfI	GANTC	1 cut(s)	39
HpaII	CCGG	1 cut(s)	174
Hpy166II	GTNNAC	2 cut(s)	29, 78
Hpy8I	GTNNAC	2 cut(s)	29, 78
HpyAV	CCTTC	1 cut(s)	176
HpyCH4V	TGCA	5 cut(s)	29, 36, 183, 194, 201
Hsp92II	CATG	1 cut(s)	183
LpnPI	CCDG	4 cut(s)	75, 108, 187, 211
MaeI	CTAG	1 cut(s)	132
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	31
MnlI	CCTC	2 cut(s)	129, 133
MseI	TTAA	1 cut(s)	226
MspI	CCGG	1 cut(s)	174
NlaIII	CATG	1 cut(s)	183
NlaIV	GGNNCC	1 cut(s)	145
NspI	RCATGY	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	145
PstI	CTGCAG	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	226
SatI	GCNGC	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	4 cut(s)	114, 133, 168, 200
SfcI	CTRYAG	1 cut(s)	199
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	131
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	226
Tru9I	TTAA	1 cut(s)	226
TscAI	CASTG	1 cut(s)	72
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	72
VneI	GTGCAC	1 cut(s)	27
XceI	RCATGY	1 cut(s)	183
XmaJI	CCTAGG	1 cut(s)	131
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.