Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Reverse (-)

16691517 .. 16786037

Gene Structure 94521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG160700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

ATGGCGAGCCATCTCTTCACCTACGGCGCCTCCCAATCAGCTCCAGCTCCCACTCCTGCTCTCTCCACCGTCTACACCCCTCGCTCCCTAGCCCAATCCTACCTCTCCGACCCGGCCCACCGCTACCTTTCCGGGTCGGACCCTCTCTCCACTTCCTCCATGTACCTCGCCGGCACCGATGGCCTCGGCGCTTACTCCGACGCTGCCAGAGCGACGTCGTATATGATGTCATCGTGGCCCGCCCCGGATGCCGAACCCGGGCCGCCGGGCTTCAAACGCACCTCTGAAGCACTCTACCATCAGGCTCTTTTGGGTGCCCATAATCCGATTGGGCAAATGGAAGCTTGGTATTCGACAAATCCTTTAGCAAAGCGACCTAGATTCGAGAATACAAGCTTGCCTATTTATCCACAGAGGCCAGGAGAGAAAGATTGTGTCCACTATATGCAAACAAGAACCTGTAAATTTGGAGAGGGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGATGGTGGAATCCCAGATTGGAAAGAGGTTCCACTTGTTGCTCCAAGTGAGTCCCTTCCCGAGAGACCTGGAGCGCCCGATTGTCCATACTTTTTAAAAACTCAAAGATGCAAGTTTGGTCTTAGATGCAAGTTTAATCATCCAAAGGACACACTGGCCACTGCGGGCGCTTCAGAAAATGGTGATGTTTATGCCTTACCCGAGAGGCCTTCTGAACCCGCATGTGCATTCTACTTGAAAACTGGTCAATGCAAGTATGGTGCAACCTGCAAATTTAATCACCCAAAAGACATCCAGATACCATCAGCCACTCAAGAGAATAAATCTGGCGAAACTGAGACAGATCTTAGGACGGAGGGCAGTGAAGTTGCTGTGAAGCCTCTTGTTTCATTCACTCCAGCACTATTGTATAACTCCAAAGAGCTTCCTGTAAGACCGGGTGAAGCTGATTGTCCGTTCTACCTGAAAACTGGAAGCTGCAAGTATGGGGCCACTTGCCGGTACAATCACCCTGATAGATATGATATCAATCCACCTGTTGCTGCAATCAGCTATCCTCTTTCAGCGCCTGCAGTTGCAGGTTTTAACATAGGAGTTGCTAGTCCAGCTGCCTTCACTTATCAAACTTTGGCAAAACCAACGGTGGGAGCGAGCCCTACTGTTTATCCTCAGCGCTTTGGACAGGCTGAGTGTGAATACTATATGAAGACTGGGGAATGTAAGTATGGTGCACAATGCAGATTCCATCACCCGATTGATAGGCCAGCAGTGGCGTTGTCAACAACAAAGCCATCTCAACAAGAAAATGTGAAGCTAACGCTTGCTGGACTACCTAGGAGAGAGGGTGCCGTTATCTGTGTGTATTACCTTAAAACCGGCACATGCAAGTATGGTGCAACCTGCAGATTTGACCACCCATCGCCTGTTTATGTTGTAGCAATGGCAGCTTCACAAGCAAAATCTGATTCTACTGGAGGGAAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

497

Amino Acids

53.95

Weight (kDa)

8.4

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	141 - 165	4e-06	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	193 - 218	2.6e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	241 - 265	4.6e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	316 - 340	4.9e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L	PF25585	317 - 339	6.4e-07	DUS3L CCCH zinc finger domain
zf-CCCH	PF00642	395 - 420	1e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	453 - 475	1e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4	PF18345	455 - 474	1.1e-06	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	218
Acc36I	ACCTGC	3 cut(s)	782, 1076, 1415
AccB1I	GGYRCC	4 cut(s)	26, 173, 314, 1352
AccI	GTMKAC	1 cut(s)	72
AciI	CCGC	5 cut(s)	121, 240, 263, 671, 726
AcoI	YGGCCR	1 cut(s)	663
AcsI	RAATTY	2 cut(s)	464, 779
AcuI	CTGAAG	2 cut(s)	306, 663
AcyI	GRCGYC	2 cut(s)	27, 215
AfaI	GTAC	2 cut(s)	164, 1010
AfeI	AGCGCT	1 cut(s)	1181
AfiI	CCNNNNNNNGG	4 cut(s)	258, 512, 1005, 1151
AgsI	TTSAA	2 cut(s)	274, 745
AjnI	CCWGG	2 cut(s)	418, 574
AjuI	GAANNNNNNNTTGG	2 cut(s)	508, 540
Alw21I	GWGCWC	1 cut(s)	1240
Alw26I	GTCTC	2 cut(s)	565, 839
Alw44I	GTGCAC	1 cut(s)	1236
AlwNI	CAGNNNCTG	1 cut(s)	1076
Ama87I	CYCGRG	3 cut(s)	257, 566, 707
Aor51HI	AGCGCT	1 cut(s)	1181
AoxI	GGCC	9 cut(s)	114, 181, 236, 260, 416, 663, 713, 996, 1268
ApaLI	GTGCAC	1 cut(s)	1236
ApeKI	GCWGC	6 cut(s)	203, 477, 984, 1049, 1115, 1451
ApoI	RAATTY	2 cut(s)	464, 779
AspA2I	CCTAGG	1 cut(s)	1340
AspLEI	GCGC	6 cut(s)	29, 191, 583, 677, 1075, 1182
AspS9I	GGNCC	5 cut(s)	115, 139, 237, 260, 996
AsuC2I	CCSGG	7 cut(s)	113, 133, 245, 258, 259, 267, 945
AsuHPI	GGTGA	6 cut(s)	10, 701, 779, 959, 1007, 1247
AvaI	CYCGRG	3 cut(s)	257, 566, 707
AvaII	GGWCC	1 cut(s)	139
AvrII	CCTAGG	1 cut(s)	1340
BaeGI	GKGCMC	2 cut(s)	319, 1240
BalI	TGGCCA	1 cut(s)	665
BanI	GGYRCC	4 cut(s)	26, 173, 314, 1352
BanII	GRGCYC	1 cut(s)	1163
BbsI	GAAGAC	1 cut(s)	1220
Bbv12I	GWGCWC	1 cut(s)	1240
BbvCI	CCTCAGC	1 cut(s)	1176
BbvI	GCAGC	6 cut(s)	190, 464, 971, 1036, 1102, 1463
BccI	CCATC	9 cut(s)	18, 173, 306, 498, 503, 817, 1260, 1306, 1432
BceAI	ACGGC	2 cut(s)	40, 1340
BciT130I	CCWGG	2 cut(s)	420, 576
BcnI	CCSGG	7 cut(s)	113, 133, 245, 258, 259, 267, 945
BcoDI	GTCTC	2 cut(s)	565, 839
BfaI	CTAG	4 cut(s)	89, 378, 1107, 1341
BfmI	CTRYAG	2 cut(s)	1077, 1408
BfoI	RGCGCY	6 cut(s)	30, 192, 584, 678, 1076, 1183
BfuAI	ACCTGC	3 cut(s)	782, 1076, 1415
BglII	AGATCT	1 cut(s)	850
BisI	GCNGC	7 cut(s)	204, 263, 478, 985, 1050, 1116, 1452
BlnI	CCTAGG	1 cut(s)	1340
BlsI	GCNGC	7 cut(s)	205, 264, 479, 986, 1051, 1117, 1453
Bme1390I	CCNGG	9 cut(s)	113, 133, 245, 258, 259, 267, 420, 576, 945
Bme18I	GGWCC	1 cut(s)	139
BmeT110I	CYCGRG	3 cut(s)	257, 566, 707
BmgT120I	GGNCC	5 cut(s)	115, 139, 237, 260, 996
BmiI	GGNNCC	8 cut(s)	28, 141, 175, 316, 504, 537, 997, 1354
BmrFI	CCNGG	9 cut(s)	113, 133, 245, 258, 259, 267, 420, 576, 945
BmrI	ACTGGG	1 cut(s)	1227
BmsI	GCATC	3 cut(s)	238, 605, 623
BmuI	ACTGGG	1 cut(s)	1227
BpiI	GAAGAC	1 cut(s)	1220
BpmI	CTGGAG	3 cut(s)	27, 597, 888
Bpu10I	CCTNAGC	1 cut(s)	1176
BpuEI	CTTGAG	1 cut(s)	804
BpuMI	CCSGG	7 cut(s)	113, 133, 245, 258, 259, 267, 945
BsaBI	GATNNNNATC	1 cut(s)	1035
BsaHI	GRCGYC	2 cut(s)	27, 215
BsaI	GGTCTC	1 cut(s)	565
BsaJI	CCNNGG	4 cut(s)	184, 243, 257, 1340
BsaXI	ACNNNNNCTCC	6 cut(s)	14, 44, 131, 161, 1336, 1366
Bsc4I	CCNNNNNNNGG	4 cut(s)	258, 512, 1005, 1151
Bse118I	RCCGGY	3 cut(s)	170, 1005, 1382
Bse1I	ACTGG	5 cut(s)	666, 754, 982, 1222, 1483
Bse3DI	GCAATG	1 cut(s)	1452
Bse8I	GATNNNNATC	1 cut(s)	1035
BseBI	CCWGG	2 cut(s)	420, 576
BseDI	CCNNGG	4 cut(s)	184, 243, 257, 1340
BseGI	GGATG	4 cut(s)	253, 490, 646, 798
BseJI	GATNNNNATC	1 cut(s)	1035
BseLI	CCNNNNNNNGG	4 cut(s)	258, 512, 1005, 1151
BseMI	GCAATG	1 cut(s)	1452
BseMII	CTCAG	3 cut(s)	834, 1185, 1190
BseNI	ACTGG	5 cut(s)	666, 754, 982, 1222, 1483
BseSI	GKGCMC	2 cut(s)	319, 1240
BseXI	GCAGC	6 cut(s)	190, 464, 971, 1036, 1102, 1463
BshFI	GGCC	9 cut(s)	116, 183, 238, 262, 418, 665, 715, 998, 1270
BshNI	GGYRCC	4 cut(s)	26, 173, 314, 1352
BsiHKAI	GWGCWC	1 cut(s)	1240
BsiHKCI	CYCGRG	3 cut(s)	257, 566, 707
BsiSI	CCGG	9 cut(s)	113, 132, 171, 245, 258, 266, 944, 1006, 1383
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	4 cut(s)	258, 512, 1005, 1151
BsmAI	GTCTC	2 cut(s)	565, 839
BsmFI	GGGAC	1 cut(s)	544
BsmI	GAATGC	1 cut(s)	734
BsnI	GGCC	9 cut(s)	116, 183, 238, 262, 418, 665, 715, 998, 1270
Bso31I	GGTCTC	1 cut(s)	565
BsoBI	CYCGRG	3 cut(s)	257, 566, 707
Bsp1286I	GDGCHC	3 cut(s)	319, 1163, 1240
Bsp143I	GATC	1 cut(s)	850
BspACI	CCGC	5 cut(s)	121, 240, 263, 671, 726
BspANI	GGCC	9 cut(s)	116, 183, 238, 262, 418, 665, 715, 998, 1270
BspCNI	CTCAG	3 cut(s)	835, 1186, 1189
BspLI	GGNNCC	8 cut(s)	28, 141, 175, 316, 504, 537, 997, 1354
BspMAI	CTGCAG	2 cut(s)	1081, 1412
BspMI	ACCTGC	3 cut(s)	782, 1076, 1415
BspT107I	GGYRCC	4 cut(s)	26, 173, 314, 1352
BspTNI	GGTCTC	1 cut(s)	565
BsrDI	GCAATG	1 cut(s)	1452
BsrFI	RCCGGY	3 cut(s)	170, 1005, 1382
BsrI	ACTGG	5 cut(s)	666, 754, 982, 1222, 1483
BssAI	RCCGGY	3 cut(s)	170, 1005, 1382
BssECI	CCNNGG	4 cut(s)	184, 243, 257, 1340
BssMI	GATC	1 cut(s)	850
BssNI	GRCGYC	2 cut(s)	27, 215
BssT1I	CCWWGG	1 cut(s)	1340
Bst2UI	CCWGG	2 cut(s)	420, 576
Bst4CI	ACNGT	3 cut(s)	70, 1150, 1168
Bst6I	CTCTTC	1 cut(s)	20
BstACI	GRCGYC	2 cut(s)	27, 215
BstC8I	GCNNGC	9 cut(s)	7, 172, 240, 398, 673, 1077, 1159, 1272, 1329
BstDEI	CTNAG	5 cut(s)	629, 843, 854, 1176, 1194
BstF5I	GGATG	4 cut(s)	253, 490, 646, 798
BstH2I	RGCGCY	6 cut(s)	30, 192, 584, 678, 1076, 1183
BstHHI	GCGC	6 cut(s)	29, 191, 583, 677, 1075, 1182
BstKTI	GATC	1 cut(s)	853
BstMAI	GTCTC	2 cut(s)	565, 839
BstMBI	GATC	1 cut(s)	850
BstMWI	GCNNNNNNNGC	7 cut(s)	180, 209, 248, 276, 1112, 1451, 1460
BstNI	CCWGG	2 cut(s)	420, 576
BstNSI	RCATGY	2 cut(s)	732, 1392
BstSCI	CCNGG	9 cut(s)	111, 131, 243, 256, 257, 265, 418, 574, 943
BstSFI	CTRYAG	2 cut(s)	1077, 1408
BstSLI	GKGCMC	2 cut(s)	319, 1240
BstV1I	GCAGC	6 cut(s)	190, 464, 971, 1036, 1102, 1463
BstV2I	GAAGAC	1 cut(s)	1220
BstX2I	RGATCY	1 cut(s)	850
BstYI	RGATCY	1 cut(s)	850
BsuRI	GGCC	9 cut(s)	116, 183, 238, 262, 418, 665, 715, 998, 1270
BtgZI	GCGATG	1 cut(s)	1410
BtsCI	GGATG	4 cut(s)	253, 490, 646, 798
BtsI	GCAGTG	3 cut(s)	666, 874, 1281
BtsIMutI	CAGTG	4 cut(s)	659, 666, 874, 1281
BveI	ACCTGC	3 cut(s)	782, 1076, 1415
Cac8I	GCNNGC	9 cut(s)	7, 172, 240, 398, 673, 1077, 1159, 1272, 1329
CaiI	CAGNNNCTG	1 cut(s)	1076
CfoI	GCGC	6 cut(s)	29, 191, 583, 677, 1075, 1182
Cfr10I	RCCGGY	3 cut(s)	170, 1005, 1382
Cfr13I	GGNCC	5 cut(s)	115, 139, 237, 260, 996
Cfr9I	CCCGGG	1 cut(s)	257
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	163, 1009
CviAII	CATG	3 cut(s)	160, 729, 1389
CviQI	GTAC	2 cut(s)	163, 1009
DdeI	CTNAG	5 cut(s)	629, 843, 854, 1176, 1194
DinI	GGCGCC	1 cut(s)	28
DpnI	GATC	1 cut(s)	852
DpnII	GATC	1 cut(s)	850
DraI	TTTAAA	1 cut(s)	603
EaeI	YGGCCR	1 cut(s)	663
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	1340
Eco147I	AGGCCT	1 cut(s)	715
Eco24I	GRGCYC	1 cut(s)	1163
Eco31I	GGTCTC	1 cut(s)	565
Eco32I	GATATC	1 cut(s)	1033
Eco47I	GGWCC	1 cut(s)	139
Eco47III	AGCGCT	1 cut(s)	1181
Eco57I	CTGAAG	2 cut(s)	306, 663
Eco88I	CYCGRG	3 cut(s)	257, 566, 707
EcoRII	CCWGG	2 cut(s)	418, 574
EcoRV	GATATC	1 cut(s)	1033
EcoT14I	CCWWGG	1 cut(s)	1340
EcoT38I	GRGCYC	1 cut(s)	1163
EgeI	GGCGCC	1 cut(s)	28
EheI	GGCGCC	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	1340
FaeI	CATG	3 cut(s)	163, 732, 1392
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	3 cut(s)	159, 728, 1388
FauI	CCCGC	3 cut(s)	247, 664, 733
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	7 cut(s)	204, 263, 478, 985, 1050, 1116, 1452
FokI	GGATG	4 cut(s)	260, 477, 633, 785
FriOI	GRGCYC	1 cut(s)	1163
Fsp4HI	GCNGC	7 cut(s)	204, 263, 478, 985, 1050, 1116, 1452
FspBI	CTAG	4 cut(s)	89, 378, 1107, 1341
GlaI	GCGC	6 cut(s)	28, 190, 582, 676, 1074, 1181
GluI	GCNGC	7 cut(s)	204, 263, 478, 985, 1050, 1116, 1452
GsuI	CTGGAG	3 cut(s)	27, 597, 888
HaeII	RGCGCY	6 cut(s)	30, 192, 584, 678, 1076, 1183
HaeIII	GGCC	9 cut(s)	116, 183, 238, 262, 418, 665, 715, 998, 1270
HapII	CCGG	9 cut(s)	113, 132, 171, 245, 258, 266, 944, 1006, 1383
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	6 cut(s)	29, 191, 583, 677, 1075, 1182
Hin1I	GRCGYC	2 cut(s)	27, 215
Hin1II	CATG	3 cut(s)	163, 732, 1392
Hin6I	GCGC	6 cut(s)	27, 189, 581, 675, 1073, 1180
HinP1I	GCGC	6 cut(s)	27, 189, 581, 675, 1073, 1180
HincII	GTYRAC	1 cut(s)	1287
HindII	GTYRAC	1 cut(s)	1287
HindIII	AAGCTT	2 cut(s)	342, 394
HinfI	GANTC	5 cut(s)	381, 516, 557, 1248, 1472
HpaII	CCGG	9 cut(s)	113, 132, 171, 245, 258, 266, 944, 1006, 1383
HphI	GGTGA	6 cut(s)	10, 701, 779, 959, 1007, 1247
Hpy166II	GTNNAC	4 cut(s)	73, 439, 1238, 1287
Hpy188I	TCNGA	8 cut(s)	109, 139, 199, 286, 327, 682, 721, 1471
Hpy188III	TCNNGA	5 cut(s)	385, 506, 566, 802, 821
Hpy8I	GTNNAC	4 cut(s)	73, 439, 1238, 1287
Hpy99I	CGWCG	3 cut(s)	203, 217, 220
HpyAV	CCTTC	3 cut(s)	572, 726, 1129
HpyCH4III	ACNGT	3 cut(s)	70, 1150, 1168
HpyCH4IV	ACGT	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	7 cut(s)	180, 209, 248, 276, 1112, 1451, 1460
HpyF3I	CTNAG	5 cut(s)	629, 843, 854, 1176, 1194
HpySE526I	ACGT	1 cut(s)	215
Hsp92I	GRCGYC	2 cut(s)	27, 215
Hsp92II	CATG	3 cut(s)	163, 732, 1392
HspAI	GCGC	6 cut(s)	27, 189, 581, 675, 1073, 1180
KasI	GGCGCC	1 cut(s)	26
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	850
LmnI	GCTCC	6 cut(s)	46, 52, 89, 553, 578, 1154
Lsp1109I	GCAGC	6 cut(s)	190, 464, 971, 1036, 1102, 1463
LweI	GCATC	3 cut(s)	238, 605, 623
MaeI	CTAG	4 cut(s)	89, 378, 1107, 1341
MaeII	ACGT	1 cut(s)	215
MalI	GATC	1 cut(s)	852
MboI	GATC	1 cut(s)	850
MboII	GAAGA	2 cut(s)	7, 1225
MflI	RGATCY	1 cut(s)	850
MhlI	GDGCHC	3 cut(s)	319, 1163, 1240
MlsI	TGGCCA	1 cut(s)	665
MluCI	AATT	2 cut(s)	464, 779
MluNI	TGGCCA	1 cut(s)	665
Mly113I	GGCGCC	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	3 cut(s)	117, 132, 222
Mox20I	TGGCCA	1 cut(s)	665
MroNI	GCCGGC	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	665
MseI	TTAA	5 cut(s)	602, 642, 783, 1092, 1377
Msp20I	TGGCCA	1 cut(s)	665
MspA1I	CMGCKG	1 cut(s)	1115
MspI	CCGG	9 cut(s)	113, 132, 171, 245, 258, 266, 944, 1006, 1383
MspR9I	CCNGG	9 cut(s)	113, 133, 245, 258, 259, 267, 420, 576, 945
Mva1269I	GAATGC	1 cut(s)	734
MvaI	CCWGG	2 cut(s)	420, 576
MwoI	GCNNNNNNNGC	7 cut(s)	180, 209, 248, 276, 1112, 1451, 1460
NaeI	GCCGGC	1 cut(s)	172
NarI	GGCGCC	1 cut(s)	27
NciI	CCSGG	7 cut(s)	113, 133, 245, 258, 259, 267, 945
NdeII	GATC	1 cut(s)	850
NgoMIV	GCCGGC	1 cut(s)	170
NlaIII	CATG	3 cut(s)	163, 732, 1392
NlaIV	GGNNCC	8 cut(s)	28, 141, 175, 316, 504, 537, 997, 1354
NmeAIII	GCCGAG	1 cut(s)	165
NspI	RCATGY	2 cut(s)	732, 1392
PceI	AGGCCT	1 cut(s)	715
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 1154
PctI	GAATGC	1 cut(s)	734
PdiI	GCCGGC	1 cut(s)	172
PfeI	GAWTC	4 cut(s)	381, 516, 1248, 1472
PkrI	GCNGC	7 cut(s)	205, 264, 479, 986, 1051, 1117, 1453
PleI	GAGTC	1 cut(s)	565
PluTI	GGCGCC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	565
Psp6I	CCWGG	2 cut(s)	418, 574
PspGI	CCWGG	2 cut(s)	418, 574
PspN4I	GGNNCC	8 cut(s)	28, 141, 175, 316, 504, 537, 997, 1354
PspPI	GGNCC	5 cut(s)	115, 139, 237, 260, 996
PstI	CTGCAG	2 cut(s)	1081, 1412
PstNI	CAGNNNCTG	1 cut(s)	1076
PsuI	RGATCY	1 cut(s)	850
PvuII	CAGCTG	1 cut(s)	1115
RsaI	GTAC	2 cut(s)	164, 1010
RsaNI	GTAC	2 cut(s)	163, 1009
SaqAI	TTAA	5 cut(s)	602, 642, 783, 1092, 1377
SatI	GCNGC	7 cut(s)	204, 263, 478, 985, 1050, 1116, 1452
Sau3AI	GATC	1 cut(s)	850
Sau96I	GGNCC	5 cut(s)	115, 139, 237, 260, 996
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	9 cut(s)	113, 133, 245, 258, 259, 267, 420, 576, 945
SduI	GDGCHC	3 cut(s)	319, 1163, 1240
SfaNI	GCATC	3 cut(s)	238, 605, 623
SfcI	CTRYAG	2 cut(s)	1077, 1408
SfoI	GGCGCC	1 cut(s)	28
SinI	GGWCC	1 cut(s)	139
SmaI	CCCGGG	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	819
SmoI	CTYRAG	1 cut(s)	819
Sse9I	AATT	2 cut(s)	464, 779
SseBI	AGGCCT	1 cut(s)	715
SsiI	CCGC	5 cut(s)	121, 240, 263, 671, 726
SspDI	GGCGCC	1 cut(s)	26
SspMI	CTAG	4 cut(s)	89, 378, 1107, 1341
StuI	AGGCCT	1 cut(s)	715
StyD4I	CCNGG	9 cut(s)	111, 131, 243, 256, 257, 265, 418, 574, 943
StyI	CCWWGG	1 cut(s)	1340
TaaI	ACNGT	3 cut(s)	70, 1150, 1168
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	2 cut(s)	353, 384
TasI	AATT	2 cut(s)	464, 779
TauI	GCSGC	1 cut(s)	265
TfiI	GAWTC	4 cut(s)	381, 516, 1248, 1472
Tru1I	TTAA	5 cut(s)	602, 642, 783, 1092, 1377
Tru9I	TTAA	5 cut(s)	602, 642, 783, 1092, 1377
TscAI	CASTG	4 cut(s)	666, 673, 874, 1281
TseI	GCWGC	6 cut(s)	203, 477, 984, 1049, 1115, 1451
TspDTI	ATGAA	2 cut(s)	885, 1226
TspGWI	ACGGA	2 cut(s)	875, 951
TspMI	CCCGGG	1 cut(s)	257
TspRI	CASTG	4 cut(s)	666, 673, 874, 1281
VneI	GTGCAC	1 cut(s)	1236
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	2 cut(s)	464, 779
XceI	RCATGY	2 cut(s)	732, 1392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	326
XmaI	CCCGGG	1 cut(s)	257
XmaJI	CCTAGG	1 cut(s)	1340
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	4 cut(s)	89, 378, 1107, 1341
ZraI	GACGTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.