Rmu_sc0010181.1_g000009

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010181.1
Physical Location & Seq
Forward (+)
40579 .. 41744
1166 bp
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UTR
Exon/CDS
Intron
Rmu_sc0010181.1_g000009.1.cds

Sequence Viewer

Length: 228 bp
atgaagattggggaatgtaagtatggtgcacaatgcagattccatcacccgattgataggccagcagtggcgttgtcaacaacaaagctatctcaacaagaaaatgtgaagctaacacttgctggactacctaggagggagggtgccgttatctgtgtgtattaccttaaaaccggcacatgcaagtatggtgcaacctgcagatttgaccacccatctcctgtttaa

Protein Analysis

75

Amino Acids

8.33

Weight (kDa)

9.3

Isoelectric Point (pI)

33.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 143
AluBI AGCT 2 cut(s) 88, 112
AluI AGCT 2 cut(s) 88, 112
Alw21I GWGCWC 1 cut(s) 31
Alw44I GTGCAC 1 cut(s) 27
AoxI GGCC 1 cut(s) 59
ApaLI GTGCAC 1 cut(s) 27
AspA2I CCTAGG 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 38
AvrII CCTAGG 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 31
BanI GGYRCC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 31
BccI CCATC 2 cut(s) 51, 223
BceAI ACGGC 1 cut(s) 131
BfaI CTAG 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 199
BfuAI ACCTGC 1 cut(s) 206
BlnI CCTAGG 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 131
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bse118I RCCGGY 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 31
BshFI GGCC 1 cut(s) 61
BshNI GGYRCC 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 31
BsiSI CCGG 1 cut(s) 174
BsnI GGCC 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 31
BspANI GGCC 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 145
BspMAI CTGCAG 1 cut(s) 203
BspMI ACCTGC 1 cut(s) 206
BspT107I GGYRCC 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 131
BssT1I CCWWGG 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 63
BstNSI RCATGY 1 cut(s) 183
BstSFI CTRYAG 1 cut(s) 199
BstSLI GKGCMC 1 cut(s) 31
BsuRI GGCC 1 cut(s) 61
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 72
BveI ACCTGC 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 63
Cfr10I RCCGGY 1 cut(s) 173
CviAII CATG 1 cut(s) 180
CviJI RGCY 3 cut(s) 61, 88, 112
CviKI_1 RGCY 3 cut(s) 61, 88, 112
Eco130I CCWWGG 1 cut(s) 131
EcoT14I CCWWGG 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 131
FaeI CATG 1 cut(s) 183
FaiI YATR 3 cut(s) 24, 181, 189
FatI CATG 1 cut(s) 179
FspBI CTAG 1 cut(s) 132
HaeIII GGCC 1 cut(s) 61
HapII CCGG 1 cut(s) 174
Hin1II CATG 1 cut(s) 183
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HinfI GANTC 1 cut(s) 39
HpaII CCGG 1 cut(s) 174
HphI GGTGA 1 cut(s) 38
Hpy166II GTNNAC 2 cut(s) 29, 78
Hpy8I GTNNAC 2 cut(s) 29, 78
HpyCH4V TGCA 5 cut(s) 29, 36, 183, 194, 201
Hsp92II CATG 1 cut(s) 183
LpnPI CCDG 4 cut(s) 75, 108, 187, 211
MaeI CTAG 1 cut(s) 132
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 31
MnlI CCTC 2 cut(s) 129, 133
MseI TTAA 2 cut(s) 168, 226
MspI CCGG 1 cut(s) 174
NlaIII CATG 1 cut(s) 183
NlaIV GGNNCC 1 cut(s) 145
NspI RCATGY 1 cut(s) 183
PfeI GAWTC 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 145
PstI CTGCAG 1 cut(s) 203
SaqAI TTAA 2 cut(s) 168, 226
SduI GDGCHC 1 cut(s) 31
SetI ASST 5 cut(s) 90, 114, 133, 168, 200
SfcI CTRYAG 1 cut(s) 199
SspMI CTAG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 131
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 2 cut(s) 168, 226
Tru9I TTAA 2 cut(s) 168, 226
TscAI CASTG 1 cut(s) 72
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 72
VneI GTGCAC 1 cut(s) 27
XceI RCATGY 1 cut(s) 183
XmaJI CCTAGG 1 cut(s) 131
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.