Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Reverse (-)

16959951 .. 16965908

Gene Structure 5958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG162000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

ATGGCGAGCCATCTCTTCACCTACGGAGCCGCCCAATCAGCTCCAGCTCCCACTCCTGCTCTCTCCACCGTCTACACCCCCCGCTCCCTAGCGCAATCCTACCTCTCCGACCCGACCCACCGCTACCTTTCCGGGTCGGACCCTCTCTCCACTTCCTCCATGTACCTCGCCGGCACCGACGGCCTCGGCGCTTACTCCGACGCCGCCAGAGCGACGTCGTATATGATGTCCTCCTGGCCCGCCCCCGATGCCGAACCCGGCCCGCCCGGCTTCAAACGCACCTCTGAAGCACTCTACCATCAGGCTCTTTTGGGTGCCCATAATCCGATTGGGCAAATGGAAGCTTGGTATTCAACAAATTCTTTAGCAAAGCGACCTAGATTCGAGAATACAAGCTTGCCTATTTATCCACAGAGGCCAGGAGAGAAAGATTGTGTCCACTATATGCAAACAAGAACCTGTAAATTTGGAGAGGGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGATGGTGGAATCCAAGATTGGAAAGAGGTTCCACTTGTTGCTCCAAGTGAGTCCCTTCCCGAGAGACCTGGAGCGCCAGATTGTCCATACTTTTTAAAAACTCAAAGATGCAAGTTTGGTCTTAGATGCAAGTTTAATCATCCAAAGGACAAACTGGCCACTGCGGGTGCTTCAGAAAATGGTGATGTTTATGCCTTACCCGAGAGGCCTTCTGAACCTGCATGTGCATTCTACTTGAAAACTGGGCAATGCAAGTATGGTGCAACCTGCAAATTTAATCACCCAAAAGACATCCAGATACCATCAGCCACTCAAGAGAATAAATCTGGCGAAACTGAGACAGATCTTAAGACGGAGGGCAGTGAAGTTGCTGTGAAGCCTCTTGTTTCATTCACTCCAGCACTATTATATAACTCCAAAGAGCTTCCTGTAAGACCGGGTGAAGCTGATTGTCCATTCTACCTGAAAACTGGAAGCTGCAAGTATGGGGCCACTTGCCGGTACAATCACCCTGATAGATATGATATCAATCCACCTGTTGCTGCAATCAGCTATCCTCTTTCGGCGCCTTCAGTTGCAGGTTTTAACATAGGAGTTGCTAATCCAGCTGCCTTCACTTATCAAACTTTGGCACAACCAACGGTGGGAGTGAGCCCTACTGTTTATCCTCAGCGATTTGGACAGGCTGAGTGTGAATACTATATGAAGACTGGGGAATGTAAGTATGGTGCACAATGCAGATTCCATCACCCGATTGATAGGCCAGCAGTGGCGTTGTCAACAACAAAGCCATCTCAACAAGAAAATGTGAAGCTAACGCTTGCTGGACTTCCTAGGAGAGAGGGTGCCGTTATCTGTGTGTATTACCTTAAAACTGGCACATGCAAGTATGGTGCAACCTGCAGATTTGACCACCCACCTCCTGGCGAAGTTGTAGCAATGGCAGCTTCACAAGCAAAATCTGATTCAACTGGAGGAAAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

497

Amino Acids

53.99

Weight (kDa)

8.3

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	141 - 165	4e-06	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	193 - 218	2.6e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	241 - 265	4.6e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	316 - 340	4.9e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L	PF25585	317 - 339	6.4e-07	DUS3L CCCH zinc finger domain
zf-CCCH	PF00642	395 - 420	1e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	453 - 476	4.7e-09	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4	PF18345	455 - 474	1.1e-06	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	218
Acc36I	ACCTGC	4 cut(s)	733, 782, 1076, 1415
AccB1I	GGYRCC	4 cut(s)	173, 314, 1072, 1352
AccB7I	CCANNNNNTGG	1 cut(s)	1430
AccBSI	CCGCTC	1 cut(s)	84
AccI	GTMKAC	1 cut(s)	72
AciI	CCGC	7 cut(s)	30, 82, 121, 204, 240, 263, 671
AcoI	YGGCCR	1 cut(s)	663
AcsI	RAATTY	3 cut(s)	358, 464, 779
AcuI	CTGAAG	3 cut(s)	306, 663, 1062
AcyI	GRCGYC	3 cut(s)	201, 215, 1073
AfaI	GTAC	2 cut(s)	164, 1010
AfiI	CCNNNNNNNGG	4 cut(s)	512, 1005, 1151, 1430
AflII	CTTAAG	1 cut(s)	854
AgsI	TTSAA	4 cut(s)	274, 354, 745, 1476
AjnI	CCWGG	4 cut(s)	233, 418, 574, 1429
AjuI	GAANNNNNNNTTGG	2 cut(s)	508, 540
Alw21I	GWGCWC	1 cut(s)	1240
Alw26I	GTCTC	2 cut(s)	565, 839
Alw44I	GTGCAC	1 cut(s)	1236
Ama87I	CYCGRG	2 cut(s)	566, 707
AoxI	GGCC	8 cut(s)	181, 236, 259, 416, 663, 713, 996, 1268
ApaLI	GTGCAC	1 cut(s)	1236
ApeKI	GCWGC	5 cut(s)	477, 984, 1049, 1115, 1451
ApoI	RAATTY	3 cut(s)	358, 464, 779
AspA2I	CCTAGG	1 cut(s)	1340
AspLEI	GCGC	4 cut(s)	94, 191, 583, 1075
AspS9I	GGNCC	4 cut(s)	139, 237, 260, 996
AsuC2I	CCSGG	4 cut(s)	133, 258, 267, 945
AsuHPI	GGTGA	6 cut(s)	10, 701, 779, 959, 1007, 1247
AvaI	CYCGRG	2 cut(s)	566, 707
AvaII	GGWCC	1 cut(s)	139
AvrII	CCTAGG	1 cut(s)	1340
BaeGI	GKGCMC	2 cut(s)	319, 1240
BalI	TGGCCA	1 cut(s)	665
BanI	GGYRCC	4 cut(s)	173, 314, 1072, 1352
BanII	GRGCYC	1 cut(s)	1163
BbsI	GAAGAC	1 cut(s)	1220
Bbv12I	GWGCWC	1 cut(s)	1240
BbvCI	CCTCAGC	1 cut(s)	1176
BbvI	GCAGC	5 cut(s)	464, 971, 1036, 1102, 1463
BccI	CCATC	7 cut(s)	18, 306, 498, 503, 817, 1260, 1306
BceAI	ACGGC	2 cut(s)	196, 1340
BciT130I	CCWGG	4 cut(s)	235, 420, 576, 1431
BcnI	CCSGG	4 cut(s)	133, 258, 267, 945
BcoDI	GTCTC	2 cut(s)	565, 839
BfaI	CTAG	3 cut(s)	89, 378, 1341
BfmI	CTRYAG	1 cut(s)	1408
BfoI	RGCGCY	3 cut(s)	192, 584, 1076
BfrI	CTTAAG	1 cut(s)	854
BfuAI	ACCTGC	4 cut(s)	733, 782, 1076, 1415
BglI	GCCNNNNNGGC	1 cut(s)	267
BglII	AGATCT	1 cut(s)	850
BisI	GCNGC	7 cut(s)	30, 204, 478, 985, 1050, 1116, 1452
BlnI	CCTAGG	1 cut(s)	1340
BlsI	GCNGC	7 cut(s)	31, 205, 479, 986, 1051, 1117, 1453
Bme1390I	CCNGG	8 cut(s)	133, 235, 258, 267, 420, 576, 945, 1431
Bme18I	GGWCC	1 cut(s)	139
BmeT110I	CYCGRG	2 cut(s)	566, 707
BmgT120I	GGNCC	4 cut(s)	139, 237, 260, 996
BmiI	GGNNCC	9 cut(s)	28, 141, 175, 316, 504, 537, 997, 1074, 1354
BmrFI	CCNGG	8 cut(s)	133, 235, 258, 267, 420, 576, 945, 1431
BmrI	ACTGGG	2 cut(s)	759, 1227
BmsI	GCATC	3 cut(s)	238, 605, 623
BmuI	ACTGGG	2 cut(s)	759, 1227
BpiI	GAAGAC	1 cut(s)	1220
BpmI	CTGGAG	3 cut(s)	27, 597, 888
Bpu10I	CCTNAGC	1 cut(s)	1176
BpuEI	CTTGAG	1 cut(s)	804
BpuMI	CCSGG	4 cut(s)	133, 258, 267, 945
BsaBI	GATNNNNATC	1 cut(s)	1035
BsaHI	GRCGYC	3 cut(s)	201, 215, 1073
BsaI	GGTCTC	1 cut(s)	565
BsaJI	CCNNGG	2 cut(s)	184, 1340
BsaXI	ACNNNNNCTCC	4 cut(s)	131, 161, 1336, 1366
Bsc4I	CCNNNNNNNGG	4 cut(s)	512, 1005, 1151, 1430
Bse118I	RCCGGY	2 cut(s)	170, 1005
Bse1I	ACTGG	6 cut(s)	666, 754, 982, 1222, 1387, 1483
Bse3DI	GCAATG	2 cut(s)	761, 1452
Bse8I	GATNNNNATC	1 cut(s)	1035
BseBI	CCWGG	4 cut(s)	235, 420, 576, 1431
BseDI	CCNNGG	2 cut(s)	184, 1340
BseGI	GGATG	3 cut(s)	490, 646, 798
BseJI	GATNNNNATC	1 cut(s)	1035
BseLI	CCNNNNNNNGG	4 cut(s)	512, 1005, 1151, 1430
BseMI	GCAATG	2 cut(s)	761, 1452
BseMII	CTCAG	3 cut(s)	834, 1185, 1190
BseNI	ACTGG	6 cut(s)	666, 754, 982, 1222, 1387, 1483
BseSI	GKGCMC	2 cut(s)	319, 1240
BseXI	GCAGC	5 cut(s)	464, 971, 1036, 1102, 1463
BshFI	GGCC	8 cut(s)	183, 238, 261, 418, 665, 715, 998, 1270
BshNI	GGYRCC	4 cut(s)	173, 314, 1072, 1352
BsiHKAI	GWGCWC	1 cut(s)	1240
BsiHKCI	CYCGRG	2 cut(s)	566, 707
BsiSI	CCGG	6 cut(s)	132, 171, 258, 267, 944, 1006
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	4 cut(s)	512, 1005, 1151, 1430
BsmAI	GTCTC	2 cut(s)	565, 839
BsmFI	GGGAC	1 cut(s)	544
BsmI	GAATGC	1 cut(s)	734
BsnI	GGCC	8 cut(s)	183, 238, 261, 418, 665, 715, 998, 1270
Bso31I	GGTCTC	1 cut(s)	565
BsoBI	CYCGRG	2 cut(s)	566, 707
Bsp1286I	GDGCHC	3 cut(s)	319, 1163, 1240
Bsp143I	GATC	1 cut(s)	850
BspACI	CCGC	7 cut(s)	30, 82, 121, 204, 240, 263, 671
BspANI	GGCC	8 cut(s)	183, 238, 261, 418, 665, 715, 998, 1270
BspCNI	CTCAG	3 cut(s)	835, 1186, 1189
BspLI	GGNNCC	9 cut(s)	28, 141, 175, 316, 504, 537, 997, 1074, 1354
BspMAI	CTGCAG	1 cut(s)	1412
BspMI	ACCTGC	4 cut(s)	733, 782, 1076, 1415
BspT107I	GGYRCC	4 cut(s)	173, 314, 1072, 1352
BspTI	CTTAAG	1 cut(s)	854
BspTNI	GGTCTC	1 cut(s)	565
BsrBI	CCGCTC	1 cut(s)	84
BsrDI	GCAATG	2 cut(s)	761, 1452
BsrFI	RCCGGY	2 cut(s)	170, 1005
BsrI	ACTGG	6 cut(s)	666, 754, 982, 1222, 1387, 1483
BssAI	RCCGGY	2 cut(s)	170, 1005
BssECI	CCNNGG	2 cut(s)	184, 1340
BssMI	GATC	1 cut(s)	850
BssNI	GRCGYC	3 cut(s)	201, 215, 1073
BssT1I	CCWWGG	1 cut(s)	1340
Bst2UI	CCWGG	4 cut(s)	235, 420, 576, 1431
Bst4CI	ACNGT	3 cut(s)	70, 1150, 1168
Bst6I	CTCTTC	1 cut(s)	20
BstACI	GRCGYC	3 cut(s)	201, 215, 1073
BstAFI	CTTAAG	1 cut(s)	854
BstC8I	GCNNGC	7 cut(s)	7, 172, 240, 263, 398, 1272, 1329
BstDEI	CTNAG	4 cut(s)	629, 843, 1176, 1194
BstF5I	GGATG	3 cut(s)	490, 646, 798
BstH2I	RGCGCY	3 cut(s)	192, 584, 1076
BstHHI	GCGC	4 cut(s)	94, 191, 583, 1075
BstKTI	GATC	1 cut(s)	853
BstMAI	GTCTC	2 cut(s)	565, 839
BstMBI	GATC	1 cut(s)	850
BstMWI	GCNNNNNNNGC	9 cut(s)	38, 180, 209, 248, 267, 276, 1112, 1451, 1460
BstNI	CCWGG	4 cut(s)	235, 420, 576, 1431
BstNSI	RCATGY	2 cut(s)	732, 1392
BstSCI	CCNGG	8 cut(s)	131, 233, 256, 265, 418, 574, 943, 1429
BstSFI	CTRYAG	1 cut(s)	1408
BstSLI	GKGCMC	2 cut(s)	319, 1240
BstV1I	GCAGC	5 cut(s)	464, 971, 1036, 1102, 1463
BstV2I	GAAGAC	1 cut(s)	1220
BstX2I	RGATCY	1 cut(s)	850
BstYI	RGATCY	1 cut(s)	850
BsuRI	GGCC	8 cut(s)	183, 238, 261, 418, 665, 715, 998, 1270
BtsCI	GGATG	3 cut(s)	490, 646, 798
BtsI	GCAGTG	3 cut(s)	666, 874, 1281
BtsIMutI	CAGTG	3 cut(s)	666, 874, 1281
BveI	ACCTGC	4 cut(s)	733, 782, 1076, 1415
Cac8I	GCNNGC	7 cut(s)	7, 172, 240, 263, 398, 1272, 1329
CfoI	GCGC	4 cut(s)	94, 191, 583, 1075
Cfr10I	RCCGGY	2 cut(s)	170, 1005
Cfr13I	GGNCC	4 cut(s)	139, 237, 260, 996
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	163, 1009
CviAII	CATG	3 cut(s)	160, 729, 1389
CviQI	GTAC	2 cut(s)	163, 1009
DdeI	CTNAG	4 cut(s)	629, 843, 1176, 1194
DinI	GGCGCC	1 cut(s)	1074
DpnI	GATC	1 cut(s)	852
DpnII	GATC	1 cut(s)	850
DraI	TTTAAA	1 cut(s)	603
EaeI	YGGCCR	1 cut(s)	663
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	1340
Eco147I	AGGCCT	1 cut(s)	715
Eco24I	GRGCYC	1 cut(s)	1163
Eco31I	GGTCTC	1 cut(s)	565
Eco32I	GATATC	1 cut(s)	1033
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	3 cut(s)	306, 663, 1062
Eco88I	CYCGRG	2 cut(s)	566, 707
EcoRII	CCWGG	4 cut(s)	233, 418, 574, 1429
EcoRV	GATATC	1 cut(s)	1033
EcoT14I	CCWWGG	1 cut(s)	1340
EcoT38I	GRGCYC	1 cut(s)	1163
EgeI	GGCGCC	1 cut(s)	1074
EheI	GGCGCC	1 cut(s)	1074
ErhI	CCWWGG	1 cut(s)	1340
FaeI	CATG	3 cut(s)	163, 732, 1392
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	3 cut(s)	159, 728, 1388
FauI	CCCGC	4 cut(s)	89, 247, 270, 664
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	7 cut(s)	30, 204, 478, 985, 1050, 1116, 1452
FokI	GGATG	3 cut(s)	477, 633, 785
FriOI	GRGCYC	1 cut(s)	1163
Fsp4HI	GCNGC	7 cut(s)	30, 204, 478, 985, 1050, 1116, 1452
FspBI	CTAG	3 cut(s)	89, 378, 1341
GlaI	GCGC	4 cut(s)	93, 190, 582, 1074
GluI	GCNGC	7 cut(s)	30, 204, 478, 985, 1050, 1116, 1452
GsuI	CTGGAG	3 cut(s)	27, 597, 888
HaeII	RGCGCY	3 cut(s)	192, 584, 1076
HaeIII	GGCC	8 cut(s)	183, 238, 261, 418, 665, 715, 998, 1270
HapII	CCGG	6 cut(s)	132, 171, 258, 267, 944, 1006
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	4 cut(s)	94, 191, 583, 1075
Hin1I	GRCGYC	3 cut(s)	201, 215, 1073
Hin1II	CATG	3 cut(s)	163, 732, 1392
Hin6I	GCGC	4 cut(s)	92, 189, 581, 1073
HinP1I	GCGC	4 cut(s)	92, 189, 581, 1073
HincII	GTYRAC	1 cut(s)	1287
HindII	GTYRAC	1 cut(s)	1287
HindIII	AAGCTT	2 cut(s)	342, 394
HinfI	GANTC	5 cut(s)	381, 516, 557, 1248, 1472
HpaII	CCGG	6 cut(s)	132, 171, 258, 267, 944, 1006
HphI	GGTGA	6 cut(s)	10, 701, 779, 959, 1007, 1247
Hpy166II	GTNNAC	4 cut(s)	73, 439, 1238, 1287
Hpy188I	TCNGA	8 cut(s)	109, 139, 199, 286, 327, 682, 721, 1471
Hpy188III	TCNNGA	5 cut(s)	385, 506, 566, 802, 821
Hpy8I	GTNNAC	4 cut(s)	73, 439, 1238, 1287
Hpy99I	CGWCG	4 cut(s)	182, 203, 217, 220
HpyAV	CCTTC	4 cut(s)	572, 726, 1086, 1129
HpyCH4III	ACNGT	3 cut(s)	70, 1150, 1168
HpyCH4IV	ACGT	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	9 cut(s)	38, 180, 209, 248, 267, 276, 1112, 1451, 1460
HpyF3I	CTNAG	4 cut(s)	629, 843, 1176, 1194
HpySE526I	ACGT	1 cut(s)	215
Hsp92I	GRCGYC	3 cut(s)	201, 215, 1073
Hsp92II	CATG	3 cut(s)	163, 732, 1392
HspAI	GCGC	4 cut(s)	92, 189, 581, 1073
KasI	GGCGCC	1 cut(s)	1072
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	850
LmnI	GCTCC	6 cut(s)	26, 46, 52, 89, 553, 578
Lsp1109I	GCAGC	5 cut(s)	464, 971, 1036, 1102, 1463
LweI	GCATC	3 cut(s)	238, 605, 623
MaeI	CTAG	3 cut(s)	89, 378, 1341
MaeII	ACGT	1 cut(s)	215
MalI	GATC	1 cut(s)	852
MbiI	CCGCTC	1 cut(s)	84
MboI	GATC	1 cut(s)	850
MboII	GAAGA	2 cut(s)	7, 1225
MflI	RGATCY	1 cut(s)	850
MhlI	GDGCHC	3 cut(s)	319, 1163, 1240
MlsI	TGGCCA	1 cut(s)	665
MluCI	AATT	3 cut(s)	358, 464, 779
MluNI	TGGCCA	1 cut(s)	665
Mly113I	GGCGCC	1 cut(s)	1073
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	3 cut(s)	117, 132, 222
Mox20I	TGGCCA	1 cut(s)	665
MroNI	GCCGGC	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	665
MseI	TTAA	6 cut(s)	602, 642, 783, 855, 1092, 1377
Msp20I	TGGCCA	1 cut(s)	665
MspA1I	CMGCKG	1 cut(s)	1115
MspCI	CTTAAG	1 cut(s)	854
MspI	CCGG	6 cut(s)	132, 171, 258, 267, 944, 1006
MspR9I	CCNGG	8 cut(s)	133, 235, 258, 267, 420, 576, 945, 1431
Mva1269I	GAATGC	1 cut(s)	734
MvaI	CCWGG	4 cut(s)	235, 420, 576, 1431
MwoI	GCNNNNNNNGC	9 cut(s)	38, 180, 209, 248, 267, 276, 1112, 1451, 1460
NaeI	GCCGGC	1 cut(s)	172
NarI	GGCGCC	1 cut(s)	1073
NciI	CCSGG	4 cut(s)	133, 258, 267, 945
NdeII	GATC	1 cut(s)	850
NgoMIV	GCCGGC	1 cut(s)	170
NlaIII	CATG	3 cut(s)	163, 732, 1392
NlaIV	GGNNCC	9 cut(s)	28, 141, 175, 316, 504, 537, 997, 1074, 1354
NmeAIII	GCCGAG	1 cut(s)	165
NspI	RCATGY	2 cut(s)	732, 1392
PceI	AGGCCT	1 cut(s)	715
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PctI	GAATGC	1 cut(s)	734
PdiI	GCCGGC	1 cut(s)	172
PfeI	GAWTC	4 cut(s)	381, 516, 1248, 1472
PflMI	CCANNNNNTGG	1 cut(s)	1430
PkrI	GCNGC	7 cut(s)	31, 205, 479, 986, 1051, 1117, 1453
PleI	GAGTC	1 cut(s)	565
PluTI	GGCGCC	1 cut(s)	1076
PpsI	GAGTC	1 cut(s)	565
Psp6I	CCWGG	4 cut(s)	233, 418, 574, 1429
PspGI	CCWGG	4 cut(s)	233, 418, 574, 1429
PspN4I	GGNNCC	9 cut(s)	28, 141, 175, 316, 504, 537, 997, 1074, 1354
PspPI	GGNCC	4 cut(s)	139, 237, 260, 996
PstI	CTGCAG	1 cut(s)	1412
PsuI	RGATCY	1 cut(s)	850
PvuII	CAGCTG	1 cut(s)	1115
RsaI	GTAC	2 cut(s)	164, 1010
RsaNI	GTAC	2 cut(s)	163, 1009
SaqAI	TTAA	6 cut(s)	602, 642, 783, 855, 1092, 1377
SatI	GCNGC	7 cut(s)	30, 204, 478, 985, 1050, 1116, 1452
Sau3AI	GATC	1 cut(s)	850
Sau96I	GGNCC	4 cut(s)	139, 237, 260, 996
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	8 cut(s)	133, 235, 258, 267, 420, 576, 945, 1431
SduI	GDGCHC	3 cut(s)	319, 1163, 1240
SfaNI	GCATC	3 cut(s)	238, 605, 623
SfcI	CTRYAG	1 cut(s)	1408
SfoI	GGCGCC	1 cut(s)	1074
SinI	GGWCC	1 cut(s)	139
SmlI	CTYRAG	2 cut(s)	819, 854
SmoI	CTYRAG	2 cut(s)	819, 854
Sse9I	AATT	3 cut(s)	358, 464, 779
SseBI	AGGCCT	1 cut(s)	715
SsiI	CCGC	7 cut(s)	30, 82, 121, 204, 240, 263, 671
SspDI	GGCGCC	1 cut(s)	1072
SspMI	CTAG	3 cut(s)	89, 378, 1341
StuI	AGGCCT	1 cut(s)	715
StyD4I	CCNGG	8 cut(s)	131, 233, 256, 265, 418, 574, 943, 1429
StyI	CCWWGG	1 cut(s)	1340
TaaI	ACNGT	3 cut(s)	70, 1150, 1168
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	1 cut(s)	384
TasI	AATT	3 cut(s)	358, 464, 779
TauI	GCSGC	2 cut(s)	32, 206
TfiI	GAWTC	4 cut(s)	381, 516, 1248, 1472
Tru1I	TTAA	6 cut(s)	602, 642, 783, 855, 1092, 1377
Tru9I	TTAA	6 cut(s)	602, 642, 783, 855, 1092, 1377
TscAI	CASTG	3 cut(s)	673, 874, 1281
TseI	GCWGC	5 cut(s)	477, 984, 1049, 1115, 1451
TspDTI	ATGAA	2 cut(s)	885, 1226
TspGWI	ACGGA	2 cut(s)	39, 875
TspRI	CASTG	3 cut(s)	673, 874, 1281
Van91I	CCANNNNNTGG	1 cut(s)	1430
Vha464I	CTTAAG	1 cut(s)	854
VneI	GTGCAC	1 cut(s)	1236
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	3 cut(s)	358, 464, 779
XceI	RCATGY	2 cut(s)	732, 1392
XcmI	CCANNNNNNNNNTGG	2 cut(s)	326, 1427
XmaJI	CCTAGG	1 cut(s)	1340
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	3 cut(s)	89, 378, 1341
ZraI	GACGTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.