zinc finger CCCH domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCCH | PF00642 | 29 - 53 | 5.6e-07 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) |
| zf-CCCH | PF00642 | 81 - 106 | 4.3e-08 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) |
| zf-CCCH | PF00642 | 129 - 153 | 3.2e-10 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) |
| zf-CCCH | PF00642 | 204 - 228 | 3.4e-10 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) |
| zf-CCCH_DUS3L | PF25585 | 205 - 227 | 4.5e-07 | DUS3L CCCH zinc finger domain |
| zf_CCCH_4 | PF18345 | 208 - 227 | 8.4e-06 | Zinc finger domain |
| zf-CCCH | PF00642 | 272 - 290 | 1.3e-08 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) |
| zf-CCCH | PF00642 | 324 - 346 | 7.7e-09 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) |
| zf_CCCH_4 | PF18345 | 325 - 344 | 7.4e-07 | Zinc finger domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 4 cut(s) | 397, 446, 740, 1025 |
| AccB1I | GGYRCC | 1 cut(s) | 962 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1040 |
| AcsI | RAATTY | 2 cut(s) | 128, 443 |
| AcuI | CTGAAG | 2 cut(s) | 327, 726 |
| AfaI | GTAC | 3 cut(s) | 603, 674, 815 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 176, 669, 1040 |
| AflII | CTTAAG | 1 cut(s) | 518 |
| AgsI | TTSAA | 2 cut(s) | 18, 409 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 44 |
| AjnI | CCWGG | 3 cut(s) | 82, 238, 1039 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 172, 204 |
| AluBI | AGCT | 9 cut(s) | 8, 60, 595, 617, 648, 723, 779, 931, 1064 |
| AluI | AGCT | 9 cut(s) | 8, 60, 595, 617, 648, 723, 779, 931, 1064 |
| Alw21I | GWGCWC | 1 cut(s) | 850 |
| Alw26I | GTCTC | 2 cut(s) | 229, 503 |
| Alw44I | GTGCAC | 1 cut(s) | 846 |
| Ama87I | CYCGRG | 1 cut(s) | 371 |
| AoxI | GGCC | 4 cut(s) | 80, 377, 660, 878 |
| ApaLI | GTGCAC | 1 cut(s) | 846 |
| ApeKI | GCWGC | 5 cut(s) | 141, 648, 713, 779, 1061 |
| ApoI | RAATTY | 2 cut(s) | 128, 443 |
| AspA2I | CCTAGG | 1 cut(s) | 950 |
| AspLEI | GCGC | 1 cut(s) | 247 |
| AspS9I | GGNCC | 1 cut(s) | 660 |
| AsuC2I | CCSGG | 1 cut(s) | 609 |
| AsuHPI | GGTGA | 4 cut(s) | 365, 623, 671, 857 |
| AvaI | CYCGRG | 1 cut(s) | 371 |
| AvrII | CCTAGG | 1 cut(s) | 950 |
| BaeGI | GKGCMC | 2 cut(s) | 103, 850 |
| BanI | GGYRCC | 1 cut(s) | 962 |
| BbsI | GAAGAC | 1 cut(s) | 830 |
| Bbv12I | GWGCWC | 1 cut(s) | 850 |
| BbvI | GCAGC | 5 cut(s) | 128, 635, 700, 766, 1073 |
| BccI | CCATC | 4 cut(s) | 162, 167, 481, 870 |
| BciT130I | CCWGG | 3 cut(s) | 84, 240, 1041 |
| BcnI | CCSGG | 1 cut(s) | 609 |
| BcoDI | GTCTC | 2 cut(s) | 229, 503 |
| BfaI | CTAG | 2 cut(s) | 42, 951 |
| BfmI | CTRYAG | 1 cut(s) | 1018 |
| BfoI | RGCGCY | 1 cut(s) | 248 |
| BfrI | CTTAAG | 1 cut(s) | 518 |
| BfuAI | ACCTGC | 4 cut(s) | 397, 446, 740, 1025 |
| BglII | AGATCT | 1 cut(s) | 514 |
| BisI | GCNGC | 5 cut(s) | 142, 649, 714, 780, 1062 |
| BlnI | CCTAGG | 1 cut(s) | 950 |
| BlsI | GCNGC | 5 cut(s) | 143, 650, 715, 781, 1063 |
| Bme1390I | CCNGG | 4 cut(s) | 84, 240, 609, 1041 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 44 |
| BmeT110I | CYCGRG | 1 cut(s) | 371 |
| BmgT120I | GGNCC | 1 cut(s) | 660 |
| BmiI | GGNNCC | 4 cut(s) | 168, 201, 661, 964 |
| BmrFI | CCNGG | 4 cut(s) | 84, 240, 609, 1041 |
| BmrI | ACTGGG | 2 cut(s) | 423, 837 |
| BmsI | GCATC | 2 cut(s) | 269, 287 |
| BmuI | ACTGGG | 2 cut(s) | 423, 837 |
| BpiI | GAAGAC | 1 cut(s) | 830 |
| BpmI | CTGGAG | 2 cut(s) | 261, 552 |
| BpuEI | CTTGAG | 1 cut(s) | 468 |
| BpuMI | CCSGG | 1 cut(s) | 609 |
| BsaBI | GATNNNNATC | 1 cut(s) | 699 |
| BsaI | GGTCTC | 1 cut(s) | 229 |
| BsaJI | CCNNGG | 1 cut(s) | 950 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 946, 976 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 176, 669, 1040 |
| Bse118I | RCCGGY | 2 cut(s) | 669, 992 |
| Bse1I | ACTGG | 3 cut(s) | 418, 646, 832 |
| Bse3DI | GCAATG | 2 cut(s) | 425, 1062 |
| Bse8I | GATNNNNATC | 1 cut(s) | 699 |
| BseBI | CCWGG | 3 cut(s) | 84, 240, 1041 |
| BseDI | CCNNGG | 1 cut(s) | 950 |
| BseGI | GGATG | 4 cut(s) | 154, 310, 451, 462 |
| BseJI | GATNNNNATC | 1 cut(s) | 699 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 176, 669, 1040 |
| BseMI | GCAATG | 2 cut(s) | 425, 1062 |
| BseMII | CTCAG | 2 cut(s) | 222, 498 |
| BseNI | ACTGG | 3 cut(s) | 418, 646, 832 |
| BseSI | GKGCMC | 2 cut(s) | 103, 850 |
| BseXI | GCAGC | 5 cut(s) | 128, 635, 700, 766, 1073 |
| BshFI | GGCC | 4 cut(s) | 82, 379, 662, 880 |
| BshNI | GGYRCC | 1 cut(s) | 962 |
| BsiHKAI | GWGCWC | 1 cut(s) | 850 |
| BsiHKCI | CYCGRG | 1 cut(s) | 371 |
| BsiSI | CCGG | 3 cut(s) | 608, 670, 993 |
| BslFI | GGGAC | 1 cut(s) | 208 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 176, 669, 1040 |
| BsmAI | GTCTC | 2 cut(s) | 229, 503 |
| BsmFI | GGGAC | 1 cut(s) | 208 |
| BsnI | GGCC | 4 cut(s) | 82, 379, 662, 880 |
| Bso31I | GGTCTC | 1 cut(s) | 229 |
| BsoBI | CYCGRG | 1 cut(s) | 371 |
| Bsp1286I | GDGCHC | 2 cut(s) | 103, 850 |
| Bsp1407I | TGTACA | 1 cut(s) | 601 |
| Bsp143I | GATC | 2 cut(s) | 514, 910 |
| BspANI | GGCC | 4 cut(s) | 82, 379, 662, 880 |
| BspCNI | CTCAG | 2 cut(s) | 223, 499 |
| BspLI | GGNNCC | 4 cut(s) | 168, 201, 661, 964 |
| BspMAI | CTGCAG | 1 cut(s) | 1022 |
| BspMI | ACCTGC | 4 cut(s) | 397, 446, 740, 1025 |
| BspT107I | GGYRCC | 1 cut(s) | 962 |
| BspTI | CTTAAG | 1 cut(s) | 518 |
| BspTNI | GGTCTC | 1 cut(s) | 229 |
| BsrDI | GCAATG | 2 cut(s) | 425, 1062 |
| BsrFI | RCCGGY | 2 cut(s) | 669, 992 |
| BsrGI | TGTACA | 1 cut(s) | 601 |
| BsrI | ACTGG | 3 cut(s) | 418, 646, 832 |
| BssAI | RCCGGY | 2 cut(s) | 669, 992 |
| BssECI | CCNNGG | 1 cut(s) | 950 |
| BssMI | GATC | 2 cut(s) | 514, 910 |
| BssT1I | CCWWGG | 1 cut(s) | 950 |
| Bst2UI | CCWGG | 3 cut(s) | 84, 240, 1041 |
| Bst4CI | ACNGT | 1 cut(s) | 334 |
| BstAFI | CTTAAG | 1 cut(s) | 518 |
| BstAUI | TGTACA | 1 cut(s) | 601 |
| BstC8I | GCNNGC | 3 cut(s) | 62, 882, 939 |
| BstDEI | CTNAG | 3 cut(s) | 231, 293, 507 |
| BstF5I | GGATG | 4 cut(s) | 154, 310, 451, 462 |
| BstH2I | RGCGCY | 1 cut(s) | 248 |
| BstHHI | GCGC | 1 cut(s) | 247 |
| BstKTI | GATC | 2 cut(s) | 517, 913 |
| BstMAI | GTCTC | 2 cut(s) | 229, 503 |
| BstMBI | GATC | 2 cut(s) | 514, 910 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 776, 1061, 1070 |
| BstNI | CCWGG | 3 cut(s) | 84, 240, 1041 |
| BstNSI | RCATGY | 2 cut(s) | 396, 1002 |
| BstSCI | CCNGG | 4 cut(s) | 82, 238, 607, 1039 |
| BstSFI | CTRYAG | 1 cut(s) | 1018 |
| BstSLI | GKGCMC | 2 cut(s) | 103, 850 |
| BstV1I | GCAGC | 5 cut(s) | 128, 635, 700, 766, 1073 |
| BstV2I | GAAGAC | 1 cut(s) | 830 |
| BstX2I | RGATCY | 1 cut(s) | 514 |
| BstYI | RGATCY | 1 cut(s) | 514 |
| BsuRI | GGCC | 4 cut(s) | 82, 379, 662, 880 |
| BtsCI | GGATG | 4 cut(s) | 154, 310, 451, 462 |
| BtsI | GCAGTG | 2 cut(s) | 538, 891 |
| BtsIMutI | CAGTG | 3 cut(s) | 538, 741, 891 |
| BveI | ACCTGC | 4 cut(s) | 397, 446, 740, 1025 |
| Cac8I | GCNNGC | 3 cut(s) | 62, 882, 939 |
| CfoI | GCGC | 1 cut(s) | 247 |
| Cfr10I | RCCGGY | 2 cut(s) | 669, 992 |
| Cfr13I | GGNCC | 1 cut(s) | 660 |
| Csp6I | GTAC | 3 cut(s) | 602, 673, 814 |
| CviAII | CATG | 2 cut(s) | 393, 999 |
| CviQI | GTAC | 3 cut(s) | 602, 673, 814 |
| DdeI | CTNAG | 3 cut(s) | 231, 293, 507 |
| DpnI | GATC | 2 cut(s) | 516, 912 |
| DpnII | GATC | 2 cut(s) | 514, 910 |
| DraI | TTTAAA | 1 cut(s) | 757 |
| DriI | GACNNNNNGTC | 1 cut(s) | 44 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 44 |
| Eco130I | CCWWGG | 1 cut(s) | 950 |
| Eco147I | AGGCCT | 1 cut(s) | 379 |
| Eco31I | GGTCTC | 1 cut(s) | 229 |
| Eco32I | GATATC | 1 cut(s) | 697 |
| Eco57I | CTGAAG | 2 cut(s) | 327, 726 |
| Eco88I | CYCGRG | 1 cut(s) | 371 |
| EcoRII | CCWGG | 3 cut(s) | 82, 238, 1039 |
| EcoRV | GATATC | 1 cut(s) | 697 |
| EcoT14I | CCWWGG | 1 cut(s) | 950 |
| ErhI | CCWWGG | 1 cut(s) | 950 |
| FaeI | CATG | 2 cut(s) | 396, 1002 |
| FaqI | GGGAC | 1 cut(s) | 208 |
| FatI | CATG | 2 cut(s) | 392, 998 |
| Fnu4HI | GCNGC | 5 cut(s) | 142, 649, 714, 780, 1062 |
| FokI | GGATG | 4 cut(s) | 141, 297, 438, 449 |
| Fsp4HI | GCNGC | 5 cut(s) | 142, 649, 714, 780, 1062 |
| FspBI | CTAG | 2 cut(s) | 42, 951 |
| GlaI | GCGC | 1 cut(s) | 246 |
| GluI | GCNGC | 5 cut(s) | 142, 649, 714, 780, 1062 |
| GsuI | CTGGAG | 2 cut(s) | 261, 552 |
| HaeII | RGCGCY | 1 cut(s) | 248 |
| HaeIII | GGCC | 4 cut(s) | 82, 379, 662, 880 |
| HapII | CCGG | 3 cut(s) | 608, 670, 993 |
| HhaI | GCGC | 1 cut(s) | 247 |
| Hin1II | CATG | 2 cut(s) | 396, 1002 |
| Hin6I | GCGC | 1 cut(s) | 245 |
| HinP1I | GCGC | 1 cut(s) | 245 |
| HincII | GTYRAC | 1 cut(s) | 897 |
| HindII | GTYRAC | 1 cut(s) | 897 |
| HindIII | AAGCTT | 2 cut(s) | 6, 58 |
| HinfI | GANTC | 5 cut(s) | 45, 180, 221, 858, 1082 |
| HpaII | CCGG | 3 cut(s) | 608, 670, 993 |
| HphI | GGTGA | 4 cut(s) | 365, 623, 671, 857 |
| Hpy166II | GTNNAC | 2 cut(s) | 848, 897 |
| Hpy188I | TCNGA | 3 cut(s) | 346, 385, 1081 |
| Hpy188III | TCNNGA | 5 cut(s) | 49, 170, 230, 466, 485 |
| Hpy8I | GTNNAC | 2 cut(s) | 848, 897 |
| HpyAV | CCTTC | 5 cut(s) | 236, 351, 390, 750, 793 |
| HpyCH4III | ACNGT | 1 cut(s) | 334 |
| HpyCH4IV | ACGT | 1 cut(s) | 812 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 776, 1061, 1070 |
| HpyF3I | CTNAG | 3 cut(s) | 231, 293, 507 |
| HpySE526I | ACGT | 1 cut(s) | 812 |
| Hsp92II | CATG | 2 cut(s) | 396, 1002 |
| HspAI | GCGC | 1 cut(s) | 245 |
| Kzo9I | GATC | 2 cut(s) | 514, 910 |
| LmnI | GCTCC | 2 cut(s) | 217, 242 |
| Lsp1109I | GCAGC | 5 cut(s) | 128, 635, 700, 766, 1073 |
| LweI | GCATC | 2 cut(s) | 269, 287 |
| MaeI | CTAG | 2 cut(s) | 42, 951 |
| MaeII | ACGT | 1 cut(s) | 812 |
| MalI | GATC | 2 cut(s) | 516, 912 |
| MboI | GATC | 2 cut(s) | 514, 910 |
| MboII | GAAGA | 1 cut(s) | 835 |
| MflI | RGATCY | 1 cut(s) | 514 |
| MhlI | GDGCHC | 2 cut(s) | 103, 850 |
| MluCI | AATT | 2 cut(s) | 128, 443 |
| MlyI | GAGTC | 2 cut(s) | 54, 230 |
| MseI | TTAA | 5 cut(s) | 306, 447, 519, 756, 987 |
| MspA1I | CMGCKG | 1 cut(s) | 779 |
| MspCI | CTTAAG | 1 cut(s) | 518 |
| MspI | CCGG | 3 cut(s) | 608, 670, 993 |
| MspR9I | CCNGG | 4 cut(s) | 84, 240, 609, 1041 |
| MvaI | CCWGG | 3 cut(s) | 84, 240, 1041 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 776, 1061, 1070 |
| NciI | CCSGG | 1 cut(s) | 609 |
| NdeII | GATC | 2 cut(s) | 514, 910 |
| NlaIII | CATG | 2 cut(s) | 396, 1002 |
| NlaIV | GGNNCC | 4 cut(s) | 168, 201, 661, 964 |
| NspI | RCATGY | 2 cut(s) | 396, 1002 |
| PceI | AGGCCT | 1 cut(s) | 379 |
| PfeI | GAWTC | 3 cut(s) | 180, 858, 1082 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1040 |
| PkrI | GCNGC | 5 cut(s) | 143, 650, 715, 781, 1063 |
| PleI | GAGTC | 2 cut(s) | 53, 229 |
| PpsI | GAGTC | 2 cut(s) | 53, 229 |
| Psp6I | CCWGG | 3 cut(s) | 82, 238, 1039 |
| PspGI | CCWGG | 3 cut(s) | 82, 238, 1039 |
| PspN4I | GGNNCC | 4 cut(s) | 168, 201, 661, 964 |
| PspPI | GGNCC | 1 cut(s) | 660 |
| PstI | CTGCAG | 1 cut(s) | 1022 |
| PsuI | RGATCY | 1 cut(s) | 514 |
| PvuII | CAGCTG | 1 cut(s) | 779 |
| RsaI | GTAC | 3 cut(s) | 603, 674, 815 |
| RsaNI | GTAC | 3 cut(s) | 602, 673, 814 |
| SaqAI | TTAA | 5 cut(s) | 306, 447, 519, 756, 987 |
| SatI | GCNGC | 5 cut(s) | 142, 649, 714, 780, 1062 |
| Sau3AI | GATC | 2 cut(s) | 514, 910 |
| Sau96I | GGNCC | 1 cut(s) | 660 |
| SchI | GAGTC | 2 cut(s) | 54, 230 |
| ScrFI | CCNGG | 4 cut(s) | 84, 240, 609, 1041 |
| SduI | GDGCHC | 2 cut(s) | 103, 850 |
| SfaNI | GCATC | 2 cut(s) | 269, 287 |
| SfcI | CTRYAG | 1 cut(s) | 1018 |
| SmlI | CTYRAG | 2 cut(s) | 483, 518 |
| SmoI | CTYRAG | 2 cut(s) | 483, 518 |
| Sse9I | AATT | 2 cut(s) | 128, 443 |
| SseBI | AGGCCT | 1 cut(s) | 379 |
| SspMI | CTAG | 2 cut(s) | 42, 951 |
| StuI | AGGCCT | 1 cut(s) | 379 |
| StyD4I | CCNGG | 4 cut(s) | 82, 238, 607, 1039 |
| StyI | CCWWGG | 1 cut(s) | 950 |
| TaaI | ACNGT | 1 cut(s) | 334 |
| TaiI | ACGT | 1 cut(s) | 815 |
| TaqI | TCGA | 1 cut(s) | 48 |
| TasI | AATT | 2 cut(s) | 128, 443 |
| TatI | WGTACW | 1 cut(s) | 601 |
| TfiI | GAWTC | 3 cut(s) | 180, 858, 1082 |
| Tru1I | TTAA | 5 cut(s) | 306, 447, 519, 756, 987 |
| Tru9I | TTAA | 5 cut(s) | 306, 447, 519, 756, 987 |
| TscAI | CASTG | 3 cut(s) | 538, 741, 891 |
| TseI | GCWGC | 5 cut(s) | 141, 648, 713, 779, 1061 |
| TspDTI | ATGAA | 2 cut(s) | 549, 836 |
| TspGWI | ACGGA | 1 cut(s) | 539 |
| TspRI | CASTG | 3 cut(s) | 538, 741, 891 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1040 |
| Vha464I | CTTAAG | 1 cut(s) | 518 |
| VneI | GTGCAC | 1 cut(s) | 846 |
| XapI | RAATTY | 2 cut(s) | 128, 443 |
| XceI | RCATGY | 2 cut(s) | 396, 1002 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1037 |
| XmaJI | CCTAGG | 1 cut(s) | 950 |
| XspI | CTAG | 2 cut(s) | 42, 951 |