RLG00000032675

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
17717054 .. 17721433
4380 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032675

Sequence Viewer

Length: 1104 bp
ATGGAAGCTTGGTATTCAACAAATCCTTTAGCAAAACGACCTAGAGTCGAGAATACAAGCTTGCCTATTTATCCACAGAGGCCAGGAGAGAAAGATTGTGCCCACTATATGCAAACAAGAACCTGTAAATTTGGAGAGGGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGATGGTGGAATCCCAGATTGGAAAGAGGTTCCACTTGTTGCTCCAAGTGAGTCCCTTCCTGAGAGACCTGGAGCGCCAGATTGTCCATACTTTCTAAAAACTCAAAGATGCAACTTTGGTCTTAGATGCAAGTTTAATCATCCAAAGGACAAACTGCCTACTGTGTGTCCTTCAGAAAATGGTGATGTTTATGCCTTACCCGAGAGGCCTTCTGAACCTGCATGTGCTTTCTACTTGAAAACTGGGCAATGCAAGTATGGTGCAACCTGCAAATTTAATCATCCAAAAGACATCCAGATACCATCAGCCACTCAAGAGAATAAATCTGGCGAAACTGAGACAGATCTTAAGACGGAGGGCAGTGAAGTTGCTGTGAAGCCTCTTGTTTCATTCACTCCAGCACTATTATATAACTCCAAAGAGCTTCCTGTACAACCGGGTGAAGCTGATTGTCCATTCTACCTGAAAACTGGAAGCTGCAAGTATGGGGCCACTTGCCGGTACAATCACCCTGATAGATATGATATCAATCCACCTGTTGCTGCAATCAGCTATCCTCTTTCAGTGCCTTCAGTTGCAGGTTTTAAAATGGGAGTTGCTAATCCAGCTGCCTTCACTAATCAAACTTTGGCACAACCAACGTACTATATGAAGACTGGGGAATGTAAGTATGGTGCACAATGCAGATTCCATCACCCGATTGATAGGCCAGCAGTGGCGTTGTCAACAACAAAGCCAGATCAACAAGAAAATGTGAAGCTAACGCTTGCTGGACTACCTAGGAGAGAGGGTGCCATTATCTGTGTGTATTACCTTAAAACCGGCACATGCAAGTATGGTGCAACCTGCAGATTTGACCACCCACCTCCTGGCGAAGTTGTAGCAATGGCAGCTTCACAAGCAAAATCAGATTCTATTGGAGGAAAAGCATAA

Protein Analysis

368

Amino Acids

40.37

Weight (kDa)

8.43

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 29 - 53 5.6e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 81 - 106 4.3e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 129 - 153 3.2e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 204 - 228 3.4e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L PF25585 205 - 227 4.5e-07 DUS3L CCCH zinc finger domain
zf_CCCH_4 PF18345 208 - 227 8.4e-06 Zinc finger domain
zf-CCCH PF00642 272 - 290 1.3e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 324 - 346 7.7e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4 PF18345 325 - 344 7.4e-07 Zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 397, 446, 740, 1025
AccB1I GGYRCC 1 cut(s) 962
AccB7I CCANNNNNTGG 1 cut(s) 1040
AcsI RAATTY 2 cut(s) 128, 443
AcuI CTGAAG 2 cut(s) 327, 726
AfaI GTAC 3 cut(s) 603, 674, 815
AfiI CCNNNNNNNGG 3 cut(s) 176, 669, 1040
AflII CTTAAG 1 cut(s) 518
AgsI TTSAA 2 cut(s) 18, 409
AhdI GACNNNNNGTC 1 cut(s) 44
AjnI CCWGG 3 cut(s) 82, 238, 1039
AjuI GAANNNNNNNTTGG 2 cut(s) 172, 204
AluBI AGCT 9 cut(s) 8, 60, 595, 617, 648, 723, 779, 931, 1064
AluI AGCT 9 cut(s) 8, 60, 595, 617, 648, 723, 779, 931, 1064
Alw21I GWGCWC 1 cut(s) 850
Alw26I GTCTC 2 cut(s) 229, 503
Alw44I GTGCAC 1 cut(s) 846
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 4 cut(s) 80, 377, 660, 878
ApaLI GTGCAC 1 cut(s) 846
ApeKI GCWGC 5 cut(s) 141, 648, 713, 779, 1061
ApoI RAATTY 2 cut(s) 128, 443
AspA2I CCTAGG 1 cut(s) 950
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 1 cut(s) 660
AsuC2I CCSGG 1 cut(s) 609
AsuHPI GGTGA 4 cut(s) 365, 623, 671, 857
AvaI CYCGRG 1 cut(s) 371
AvrII CCTAGG 1 cut(s) 950
BaeGI GKGCMC 2 cut(s) 103, 850
BanI GGYRCC 1 cut(s) 962
BbsI GAAGAC 1 cut(s) 830
Bbv12I GWGCWC 1 cut(s) 850
BbvI GCAGC 5 cut(s) 128, 635, 700, 766, 1073
BccI CCATC 4 cut(s) 162, 167, 481, 870
BciT130I CCWGG 3 cut(s) 84, 240, 1041
BcnI CCSGG 1 cut(s) 609
BcoDI GTCTC 2 cut(s) 229, 503
BfaI CTAG 2 cut(s) 42, 951
BfmI CTRYAG 1 cut(s) 1018
BfoI RGCGCY 1 cut(s) 248
BfrI CTTAAG 1 cut(s) 518
BfuAI ACCTGC 4 cut(s) 397, 446, 740, 1025
BglII AGATCT 1 cut(s) 514
BisI GCNGC 5 cut(s) 142, 649, 714, 780, 1062
BlnI CCTAGG 1 cut(s) 950
BlsI GCNGC 5 cut(s) 143, 650, 715, 781, 1063
Bme1390I CCNGG 4 cut(s) 84, 240, 609, 1041
BmeRI GACNNNNNGTC 1 cut(s) 44
BmeT110I CYCGRG 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 660
BmiI GGNNCC 4 cut(s) 168, 201, 661, 964
BmrFI CCNGG 4 cut(s) 84, 240, 609, 1041
BmrI ACTGGG 2 cut(s) 423, 837
BmsI GCATC 2 cut(s) 269, 287
BmuI ACTGGG 2 cut(s) 423, 837
BpiI GAAGAC 1 cut(s) 830
BpmI CTGGAG 2 cut(s) 261, 552
BpuEI CTTGAG 1 cut(s) 468
BpuMI CCSGG 1 cut(s) 609
BsaBI GATNNNNATC 1 cut(s) 699
BsaI GGTCTC 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 950
BsaXI ACNNNNNCTCC 2 cut(s) 946, 976
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 669, 1040
Bse118I RCCGGY 2 cut(s) 669, 992
Bse1I ACTGG 3 cut(s) 418, 646, 832
Bse3DI GCAATG 2 cut(s) 425, 1062
Bse8I GATNNNNATC 1 cut(s) 699
BseBI CCWGG 3 cut(s) 84, 240, 1041
BseDI CCNNGG 1 cut(s) 950
BseGI GGATG 4 cut(s) 154, 310, 451, 462
BseJI GATNNNNATC 1 cut(s) 699
BseLI CCNNNNNNNGG 3 cut(s) 176, 669, 1040
BseMI GCAATG 2 cut(s) 425, 1062
BseMII CTCAG 2 cut(s) 222, 498
BseNI ACTGG 3 cut(s) 418, 646, 832
BseSI GKGCMC 2 cut(s) 103, 850
BseXI GCAGC 5 cut(s) 128, 635, 700, 766, 1073
BshFI GGCC 4 cut(s) 82, 379, 662, 880
BshNI GGYRCC 1 cut(s) 962
BsiHKAI GWGCWC 1 cut(s) 850
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 3 cut(s) 608, 670, 993
BslFI GGGAC 1 cut(s) 208
BslI CCNNNNNNNGG 3 cut(s) 176, 669, 1040
BsmAI GTCTC 2 cut(s) 229, 503
BsmFI GGGAC 1 cut(s) 208
BsnI GGCC 4 cut(s) 82, 379, 662, 880
Bso31I GGTCTC 1 cut(s) 229
BsoBI CYCGRG 1 cut(s) 371
Bsp1286I GDGCHC 2 cut(s) 103, 850
Bsp1407I TGTACA 1 cut(s) 601
Bsp143I GATC 2 cut(s) 514, 910
BspANI GGCC 4 cut(s) 82, 379, 662, 880
BspCNI CTCAG 2 cut(s) 223, 499
BspLI GGNNCC 4 cut(s) 168, 201, 661, 964
BspMAI CTGCAG 1 cut(s) 1022
BspMI ACCTGC 4 cut(s) 397, 446, 740, 1025
BspT107I GGYRCC 1 cut(s) 962
BspTI CTTAAG 1 cut(s) 518
BspTNI GGTCTC 1 cut(s) 229
BsrDI GCAATG 2 cut(s) 425, 1062
BsrFI RCCGGY 2 cut(s) 669, 992
BsrGI TGTACA 1 cut(s) 601
BsrI ACTGG 3 cut(s) 418, 646, 832
BssAI RCCGGY 2 cut(s) 669, 992
BssECI CCNNGG 1 cut(s) 950
BssMI GATC 2 cut(s) 514, 910
BssT1I CCWWGG 1 cut(s) 950
Bst2UI CCWGG 3 cut(s) 84, 240, 1041
Bst4CI ACNGT 1 cut(s) 334
BstAFI CTTAAG 1 cut(s) 518
BstAUI TGTACA 1 cut(s) 601
BstC8I GCNNGC 3 cut(s) 62, 882, 939
BstDEI CTNAG 3 cut(s) 231, 293, 507
BstF5I GGATG 4 cut(s) 154, 310, 451, 462
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 2 cut(s) 517, 913
BstMAI GTCTC 2 cut(s) 229, 503
BstMBI GATC 2 cut(s) 514, 910
BstMWI GCNNNNNNNGC 3 cut(s) 776, 1061, 1070
BstNI CCWGG 3 cut(s) 84, 240, 1041
BstNSI RCATGY 2 cut(s) 396, 1002
BstSCI CCNGG 4 cut(s) 82, 238, 607, 1039
BstSFI CTRYAG 1 cut(s) 1018
BstSLI GKGCMC 2 cut(s) 103, 850
BstV1I GCAGC 5 cut(s) 128, 635, 700, 766, 1073
BstV2I GAAGAC 1 cut(s) 830
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
BsuRI GGCC 4 cut(s) 82, 379, 662, 880
BtsCI GGATG 4 cut(s) 154, 310, 451, 462
BtsI GCAGTG 2 cut(s) 538, 891
BtsIMutI CAGTG 3 cut(s) 538, 741, 891
BveI ACCTGC 4 cut(s) 397, 446, 740, 1025
Cac8I GCNNGC 3 cut(s) 62, 882, 939
CfoI GCGC 1 cut(s) 247
Cfr10I RCCGGY 2 cut(s) 669, 992
Cfr13I GGNCC 1 cut(s) 660
Csp6I GTAC 3 cut(s) 602, 673, 814
CviAII CATG 2 cut(s) 393, 999
CviQI GTAC 3 cut(s) 602, 673, 814
DdeI CTNAG 3 cut(s) 231, 293, 507
DpnI GATC 2 cut(s) 516, 912
DpnII GATC 2 cut(s) 514, 910
DraI TTTAAA 1 cut(s) 757
DriI GACNNNNNGTC 1 cut(s) 44
Eam1105I GACNNNNNGTC 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 950
Eco147I AGGCCT 1 cut(s) 379
Eco31I GGTCTC 1 cut(s) 229
Eco32I GATATC 1 cut(s) 697
Eco57I CTGAAG 2 cut(s) 327, 726
Eco88I CYCGRG 1 cut(s) 371
EcoRII CCWGG 3 cut(s) 82, 238, 1039
EcoRV GATATC 1 cut(s) 697
EcoT14I CCWWGG 1 cut(s) 950
ErhI CCWWGG 1 cut(s) 950
FaeI CATG 2 cut(s) 396, 1002
FaqI GGGAC 1 cut(s) 208
FatI CATG 2 cut(s) 392, 998
Fnu4HI GCNGC 5 cut(s) 142, 649, 714, 780, 1062
FokI GGATG 4 cut(s) 141, 297, 438, 449
Fsp4HI GCNGC 5 cut(s) 142, 649, 714, 780, 1062
FspBI CTAG 2 cut(s) 42, 951
GlaI GCGC 1 cut(s) 246
GluI GCNGC 5 cut(s) 142, 649, 714, 780, 1062
GsuI CTGGAG 2 cut(s) 261, 552
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 4 cut(s) 82, 379, 662, 880
HapII CCGG 3 cut(s) 608, 670, 993
HhaI GCGC 1 cut(s) 247
Hin1II CATG 2 cut(s) 396, 1002
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HincII GTYRAC 1 cut(s) 897
HindII GTYRAC 1 cut(s) 897
HindIII AAGCTT 2 cut(s) 6, 58
HinfI GANTC 5 cut(s) 45, 180, 221, 858, 1082
HpaII CCGG 3 cut(s) 608, 670, 993
HphI GGTGA 4 cut(s) 365, 623, 671, 857
Hpy166II GTNNAC 2 cut(s) 848, 897
Hpy188I TCNGA 3 cut(s) 346, 385, 1081
Hpy188III TCNNGA 5 cut(s) 49, 170, 230, 466, 485
Hpy8I GTNNAC 2 cut(s) 848, 897
HpyAV CCTTC 5 cut(s) 236, 351, 390, 750, 793
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4IV ACGT 1 cut(s) 812
HpyF10VI GCNNNNNNNGC 3 cut(s) 776, 1061, 1070
HpyF3I CTNAG 3 cut(s) 231, 293, 507
HpySE526I ACGT 1 cut(s) 812
Hsp92II CATG 2 cut(s) 396, 1002
HspAI GCGC 1 cut(s) 245
Kzo9I GATC 2 cut(s) 514, 910
LmnI GCTCC 2 cut(s) 217, 242
Lsp1109I GCAGC 5 cut(s) 128, 635, 700, 766, 1073
LweI GCATC 2 cut(s) 269, 287
MaeI CTAG 2 cut(s) 42, 951
MaeII ACGT 1 cut(s) 812
MalI GATC 2 cut(s) 516, 912
MboI GATC 2 cut(s) 514, 910
MboII GAAGA 1 cut(s) 835
MflI RGATCY 1 cut(s) 514
MhlI GDGCHC 2 cut(s) 103, 850
MluCI AATT 2 cut(s) 128, 443
MlyI GAGTC 2 cut(s) 54, 230
MseI TTAA 5 cut(s) 306, 447, 519, 756, 987
MspA1I CMGCKG 1 cut(s) 779
MspCI CTTAAG 1 cut(s) 518
MspI CCGG 3 cut(s) 608, 670, 993
MspR9I CCNGG 4 cut(s) 84, 240, 609, 1041
MvaI CCWGG 3 cut(s) 84, 240, 1041
MwoI GCNNNNNNNGC 3 cut(s) 776, 1061, 1070
NciI CCSGG 1 cut(s) 609
NdeII GATC 2 cut(s) 514, 910
NlaIII CATG 2 cut(s) 396, 1002
NlaIV GGNNCC 4 cut(s) 168, 201, 661, 964
NspI RCATGY 2 cut(s) 396, 1002
PceI AGGCCT 1 cut(s) 379
PfeI GAWTC 3 cut(s) 180, 858, 1082
PflMI CCANNNNNTGG 1 cut(s) 1040
PkrI GCNGC 5 cut(s) 143, 650, 715, 781, 1063
PleI GAGTC 2 cut(s) 53, 229
PpsI GAGTC 2 cut(s) 53, 229
Psp6I CCWGG 3 cut(s) 82, 238, 1039
PspGI CCWGG 3 cut(s) 82, 238, 1039
PspN4I GGNNCC 4 cut(s) 168, 201, 661, 964
PspPI GGNCC 1 cut(s) 660
PstI CTGCAG 1 cut(s) 1022
PsuI RGATCY 1 cut(s) 514
PvuII CAGCTG 1 cut(s) 779
RsaI GTAC 3 cut(s) 603, 674, 815
RsaNI GTAC 3 cut(s) 602, 673, 814
SaqAI TTAA 5 cut(s) 306, 447, 519, 756, 987
SatI GCNGC 5 cut(s) 142, 649, 714, 780, 1062
Sau3AI GATC 2 cut(s) 514, 910
Sau96I GGNCC 1 cut(s) 660
SchI GAGTC 2 cut(s) 54, 230
ScrFI CCNGG 4 cut(s) 84, 240, 609, 1041
SduI GDGCHC 2 cut(s) 103, 850
SfaNI GCATC 2 cut(s) 269, 287
SfcI CTRYAG 1 cut(s) 1018
SmlI CTYRAG 2 cut(s) 483, 518
SmoI CTYRAG 2 cut(s) 483, 518
Sse9I AATT 2 cut(s) 128, 443
SseBI AGGCCT 1 cut(s) 379
SspMI CTAG 2 cut(s) 42, 951
StuI AGGCCT 1 cut(s) 379
StyD4I CCNGG 4 cut(s) 82, 238, 607, 1039
StyI CCWWGG 1 cut(s) 950
TaaI ACNGT 1 cut(s) 334
TaiI ACGT 1 cut(s) 815
TaqI TCGA 1 cut(s) 48
TasI AATT 2 cut(s) 128, 443
TatI WGTACW 1 cut(s) 601
TfiI GAWTC 3 cut(s) 180, 858, 1082
Tru1I TTAA 5 cut(s) 306, 447, 519, 756, 987
Tru9I TTAA 5 cut(s) 306, 447, 519, 756, 987
TscAI CASTG 3 cut(s) 538, 741, 891
TseI GCWGC 5 cut(s) 141, 648, 713, 779, 1061
TspDTI ATGAA 2 cut(s) 549, 836
TspGWI ACGGA 1 cut(s) 539
TspRI CASTG 3 cut(s) 538, 741, 891
Van91I CCANNNNNTGG 1 cut(s) 1040
Vha464I CTTAAG 1 cut(s) 518
VneI GTGCAC 1 cut(s) 846
XapI RAATTY 2 cut(s) 128, 443
XceI RCATGY 2 cut(s) 396, 1002
XcmI CCANNNNNNNNNTGG 1 cut(s) 1037
XmaJI CCTAGG 1 cut(s) 950
XspI CTAG 2 cut(s) 42, 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.