Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Reverse (-)

19009519 .. 19012819

Gene Structure 3301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g14160.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAAAACGAGAAGGAGAGAGAGAATGAAAGCAGCGGCATTGGAGGAGAGAATCAGAATGGTGGTGAGGTGGAGAAGGAGGGTGTTGAGGAGAGTAGCACAAGGAATCAGTACCCATTGAGGCCGGAACCTGGGGACTGTTGGTGGTATCTGAAGACTGGCAATTGTAAGTTTGGATCGAATTGCAAGTTTAATCACCCTCGGAGAAGGAAAAACAAGCAGAAGAAGGTGTCTAAGGACAAGGCAAAGCAGAGGGAAGATTTGGCAGAGAAGCAAGACCAGACCGAAAGCAAGGTGTGTAACTGCATCGATGATCAAAGTGATCATCCGCTGTTTATTCAGTCTCCTTTGCCATCCGATCTCAATCCTGAAATCCTTGCCCTTGACCCCACTGAGCTCGATAGGACCTATGCCATCTTCGATAAATTTCAGCAATTCGACCCCGCCTTTGAGAATTGGAACTTCAATCCTGCCATTGTTGACGAGATTTGGGAGTTGAGTTTGAAGGAATGGGAGAAAAAAGAGGAAGAAGAGAAGGAGAGAGAGTCTGAAAAGGAAAATGAGATGGAGAGAGAGGGCAAAAGCAGCGGCATTGGAGGAGGGAATCAGAATGGTGGTGACATGGAGAACGAGGTTGTTGTGGAGAGTAGCAGAAGGAATCAGTACCCATTGAGGCCGAAAGCTGGAGACTGTTCGTTGTATCTGAAGACTGGCAGTTGTAAGTTTGGATCGAATTGCAAGTTTAATCACCCTCGGGGAAGGAAAAACAAGCAGGTGTGTAAGCACAAAGCAAAACAGAGGGTAGAGTTGGAAGAGAAGCAAGACCAGACCCAAAGCAAGAAGGTGTCTAAGAACAAGGCAAAGCAGAAGGAAGAGTTGGCAGAGAAGCAAGACCGGCCTGAAAGCAAGCATTGCCCAGGACGACGTAGAGGGGAACCCTCTGTAGCTCCAGCTCTGGAACTTAACTTTTTGGGCCTGCCAATTCGTCCGGGGAAGAAAGATTGTTGGTACTATATGCGAAATGGCACTTGCAAGTATGAAAACAAATGCTTGTTTAATCACCCTGATCCTACACCTGCAGAAGAATCTCACCCACAATCCGCTTATGAATCTCATGGGATTCATTCCGAAACTACAGAATTCATCACTCCGAGCTGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH zf-CCCH_2

Protein Analysis

388

Amino Acids

44.65

Weight (kDa)

5.99

Isoelectric Point (pI)

57.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	763, 1084
Acc36I	ACCTGC	2 cut(s)	763, 1084
AciI	CCGC	5 cut(s)	36, 329, 444, 588, 1101
AclWI	GGATC	3 cut(s)	184, 736, 1061
AcsI	RAATTY	2 cut(s)	425, 1139
AcuI	CTGAAG	2 cut(s)	173, 725
AfaI	GTAC	3 cut(s)	113, 665, 1010
AfiI	CCNNNNNNNGG	2 cut(s)	131, 683
AgsI	TTSAA	2 cut(s)	466, 505
AjnI	CCWGG	2 cut(s)	130, 916
AjuI	GAANNNNNNNTTGG	2 cut(s)	860, 892
AluBI	AGCT	5 cut(s)	397, 683, 947, 953, 1155
AluI	AGCT	5 cut(s)	397, 683, 947, 953, 1155
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	2 cut(s)	348, 681
AlwI	GGATC	3 cut(s)	184, 736, 1061
Ama87I	CYCGRG	1 cut(s)	753
AoxI	GGCC	4 cut(s)	122, 674, 896, 973
ApeKI	GCWGC	2 cut(s)	33, 585
ApoI	RAATTY	2 cut(s)	425, 1139
ArsI	GACNNNNNNTTYG	2 cut(s)	431, 463
AspS9I	GGNCC	2 cut(s)	405, 973
AsuC2I	CCSGG	1 cut(s)	990
AsuHPI	GGTGA	6 cut(s)	77, 188, 629, 740, 1052, 1082
AvaI	CYCGRG	1 cut(s)	753
AvaII	GGWCC	1 cut(s)	405
BanII	GRGCYC	1 cut(s)	399
BbsI	GAAGAC	2 cut(s)	161, 713
Bbv12I	GWGCWC	1 cut(s)	399
BbvI	GCAGC	2 cut(s)	45, 597
BccI	CCATC	3 cut(s)	361, 422, 559
BciT130I	CCWGG	2 cut(s)	132, 918
BclI	TGATCA	2 cut(s)	313, 322
BcnI	CCSGG	1 cut(s)	990
BcoDI	GTCTC	2 cut(s)	348, 681
BfmI	CTRYAG	3 cut(s)	942, 1077, 1134
BfuAI	ACCTGC	2 cut(s)	763, 1084
BisI	GCNGC	4 cut(s)	34, 37, 586, 589
BlsI	GCNGC	4 cut(s)	35, 38, 587, 590
Bme1390I	CCNGG	3 cut(s)	132, 918, 990
Bme18I	GGWCC	1 cut(s)	405
BmeT110I	CYCGRG	1 cut(s)	753
BmgT120I	GGNCC	2 cut(s)	405, 973
BmiI	GGNNCC	2 cut(s)	129, 936
BmrFI	CCNGG	3 cut(s)	132, 918, 990
BmsI	GCATC	1 cut(s)	315
BpiI	GAAGAC	2 cut(s)	161, 713
BpmI	CTGGAG	2 cut(s)	705, 933
BpuMI	CCSGG	1 cut(s)	990
Bsa29I	ATCGAT	1 cut(s)	309
BsaBI	GATNNNNATC	1 cut(s)	363
BsaJI	CCNNGG	5 cut(s)	131, 200, 752, 916, 989
BsaXI	ACNNNNNCTCC	2 cut(s)	530, 560
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 683
Bse118I	RCCGGY	1 cut(s)	894
Bse1I	ACTGG	2 cut(s)	163, 715
Bse3DI	GCAATG	1 cut(s)	910
Bse8I	GATNNNNATC	1 cut(s)	363
BseBI	CCWGG	2 cut(s)	132, 918
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	5 cut(s)	131, 200, 752, 916, 989
BseGI	GGATG	2 cut(s)	325, 353
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	2 cut(s)	131, 683
BseMI	GCAATG	1 cut(s)	910
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	2 cut(s)	163, 715
BseRI	GAGGAG	3 cut(s)	60, 104, 612
BseXI	GCAGC	2 cut(s)	45, 597
BseYI	CCCAGC	1 cut(s)	1155
BshFI	GGCC	4 cut(s)	124, 676, 898, 975
BshVI	ATCGAT	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	399
BsiHKCI	CYCGRG	1 cut(s)	753
BsiSI	CCGG	3 cut(s)	125, 895, 989
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	131, 683
BsmAI	GTCTC	2 cut(s)	348, 681
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	4 cut(s)	124, 676, 898, 975
BsoBI	CYCGRG	1 cut(s)	753
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp143I	GATC	6 cut(s)	176, 313, 322, 358, 728, 1066
BspACI	CCGC	5 cut(s)	36, 329, 444, 588, 1101
BspANI	GGCC	4 cut(s)	124, 676, 898, 975
BspCNI	CTCAG	1 cut(s)	385
BspDI	ATCGAT	1 cut(s)	309
BspLI	GGNNCC	2 cut(s)	129, 936
BspMAI	CTGCAG	1 cut(s)	1081
BspMI	ACCTGC	2 cut(s)	763, 1084
BspPI	GGATC	3 cut(s)	184, 736, 1061
BsrDI	GCAATG	1 cut(s)	910
BsrFI	RCCGGY	1 cut(s)	894
BsrI	ACTGG	2 cut(s)	163, 715
BssAI	RCCGGY	1 cut(s)	894
BssECI	CCNNGG	5 cut(s)	131, 200, 752, 916, 989
BssMI	GATC	6 cut(s)	176, 313, 322, 358, 728, 1066
Bst2UI	CCWGG	2 cut(s)	132, 918
Bst4CI	ACNGT	2 cut(s)	140, 692
Bst6I	CTCTTC	3 cut(s)	525, 807, 867
BstAPI	GCANNNNNTGC	1 cut(s)	912
BstC8I	GCNNGC	2 cut(s)	908, 977
BstDEI	CTNAG	3 cut(s)	234, 393, 849
BstF5I	GGATG	2 cut(s)	325, 353
BstKTI	GATC	6 cut(s)	179, 316, 325, 361, 731, 1069
BstMAI	GTCTC	2 cut(s)	348, 681
BstMBI	GATC	6 cut(s)	176, 313, 322, 358, 728, 1066
BstMWI	GCNNNNNNNGC	3 cut(s)	585, 895, 912
BstNI	CCWGG	2 cut(s)	132, 918
BstSCI	CCNGG	3 cut(s)	130, 916, 988
BstSFI	CTRYAG	3 cut(s)	942, 1077, 1134
BstV1I	GCAGC	2 cut(s)	45, 597
BstV2I	GAAGAC	2 cut(s)	161, 713
Bsu15I	ATCGAT	1 cut(s)	309
BsuRI	GGCC	4 cut(s)	124, 676, 898, 975
BsuTUI	ATCGAT	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	325, 353
BtsIMutI	CAGTG	1 cut(s)	390
BveI	ACCTGC	2 cut(s)	763, 1084
Cac8I	GCNNGC	2 cut(s)	908, 977
Cfr10I	RCCGGY	1 cut(s)	894
Cfr13I	GGNCC	2 cut(s)	405, 973
ClaI	ATCGAT	1 cut(s)	309
Csp6I	GTAC	3 cut(s)	112, 664, 1009
CviAII	CATG	2 cut(s)	622, 1115
CviJI	RGCY	9 cut(s)	124, 397, 676, 683, 898, 947, 953, 975, 1155
CviKI_1	RGCY	9 cut(s)	124, 397, 676, 683, 898, 947, 953, 975, 1155
CviQI	GTAC	3 cut(s)	112, 664, 1009
DdeI	CTNAG	3 cut(s)	234, 393, 849
DpnI	GATC	6 cut(s)	178, 315, 324, 360, 730, 1068
DpnII	GATC	6 cut(s)	176, 313, 322, 358, 728, 1066
Eam1104I	CTCTTC	3 cut(s)	525, 807, 867
EarI	CTCTTC	3 cut(s)	525, 807, 867
Ecl136II	GAGCTC	1 cut(s)	397
Eco24I	GRGCYC	1 cut(s)	399
Eco47I	GGWCC	1 cut(s)	405
Eco53kI	GAGCTC	1 cut(s)	397
Eco57I	CTGAAG	2 cut(s)	173, 725
Eco88I	CYCGRG	1 cut(s)	753
EcoICRI	GAGCTC	1 cut(s)	397
EcoO109I	RGGNCCY	1 cut(s)	405
EcoRI	GAATTC	1 cut(s)	1139
EcoRII	CCWGG	2 cut(s)	130, 916
EcoT38I	GRGCYC	1 cut(s)	399
FaeI	CATG	2 cut(s)	625, 1118
FaiI	YATR	7 cut(s)	411, 623, 1014, 1016, 1038, 1107, 1116
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	2 cut(s)	621, 1114
FauI	CCCGC	1 cut(s)	451
FbaI	TGATCA	2 cut(s)	313, 322
Fnu4HI	GCNGC	4 cut(s)	34, 37, 586, 589
FokI	GGATG	2 cut(s)	312, 340
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	4 cut(s)	34, 37, 586, 589
GluI	GCNGC	4 cut(s)	34, 37, 586, 589
GsaI	CCCAGC	1 cut(s)	1159
GsuI	CTGGAG	2 cut(s)	705, 933
HaeIII	GGCC	4 cut(s)	124, 676, 898, 975
HapII	CCGG	3 cut(s)	125, 895, 989
Hin1II	CATG	2 cut(s)	625, 1118
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	8 cut(s)	52, 106, 545, 604, 658, 1085, 1109, 1120
HpaII	CCGG	3 cut(s)	125, 895, 989
HphI	GGTGA	6 cut(s)	77, 188, 629, 740, 1052, 1082
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	9 cut(s)	57, 153, 204, 358, 550, 609, 705, 1129, 1152
Hpy188III	TCNNGA	2 cut(s)	368, 956
Hpy8I	GTNNAC	1 cut(s)	481
Hpy99I	CGWCG	1 cut(s)	927
HpyCH4III	ACNGT	2 cut(s)	140, 692
HpyCH4IV	ACGT	1 cut(s)	925
HpyCH4V	TGCA	5 cut(s)	186, 306, 738, 1032, 1079
HpyF10VI	GCNNNNNNNGC	3 cut(s)	585, 895, 912
HpyF3I	CTNAG	3 cut(s)	234, 393, 849
HpySE526I	ACGT	1 cut(s)	925
Hsp92II	CATG	2 cut(s)	625, 1118
Ksp22I	TGATCA	2 cut(s)	313, 322
Kzo9I	GATC	6 cut(s)	176, 313, 322, 358, 728, 1066
LmnI	GCTCC	1 cut(s)	952
Lsp1109I	GCAGC	2 cut(s)	45, 597
LweI	GCATC	1 cut(s)	315
MaeII	ACGT	1 cut(s)	925
MaeIII	GTNAC	2 cut(s)	299, 617
MalI	GATC	6 cut(s)	178, 315, 324, 360, 730, 1068
MboI	GATC	6 cut(s)	176, 313, 322, 358, 728, 1066
MfeI	CAATTG	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	399
MluCI	AATT	8 cut(s)	163, 181, 425, 434, 454, 733, 981, 1139
MlyI	GAGTC	1 cut(s)	554
MmeI	TCCRAC	1 cut(s)	789
MseI	TTAA	4 cut(s)	192, 744, 963, 1056
MspA1I	CMGCKG	3 cut(s)	36, 331, 588
MspI	CCGG	3 cut(s)	125, 895, 989
MspR9I	CCNGG	3 cut(s)	132, 918, 990
MunI	CAATTG	1 cut(s)	163
MvaI	CCWGG	2 cut(s)	132, 918
MwoI	GCNNNNNNNGC	3 cut(s)	585, 895, 912
NciI	CCSGG	1 cut(s)	990
NdeII	GATC	6 cut(s)	176, 313, 322, 358, 728, 1066
NlaIII	CATG	2 cut(s)	625, 1118
NlaIV	GGNNCC	2 cut(s)	129, 936
NmuCI	GTSAC	1 cut(s)	617
PaqCI	CACCTGC	2 cut(s)	763, 1084
PfeI	GAWTC	7 cut(s)	52, 106, 604, 658, 1085, 1109, 1120
PkrI	GCNGC	4 cut(s)	35, 38, 587, 590
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
PpuMI	RGGWCCY	1 cut(s)	405
Psp124BI	GAGCTC	1 cut(s)	399
Psp5II	RGGWCCY	1 cut(s)	405
Psp6I	CCWGG	2 cut(s)	130, 916
PspFI	CCCAGC	1 cut(s)	1155
PspGI	CCWGG	2 cut(s)	130, 916
PspN4I	GGNNCC	2 cut(s)	129, 936
PspPI	GGNCC	2 cut(s)	405, 973
PspPPI	RGGWCCY	1 cut(s)	405
PstI	CTGCAG	1 cut(s)	1081
RsaI	GTAC	3 cut(s)	113, 665, 1010
RsaNI	GTAC	3 cut(s)	112, 664, 1009
SacI	GAGCTC	1 cut(s)	399
SaqAI	TTAA	4 cut(s)	192, 744, 963, 1056
SatI	GCNGC	4 cut(s)	34, 37, 586, 589
Sau3AI	GATC	6 cut(s)	176, 313, 322, 358, 728, 1066
Sau96I	GGNCC	2 cut(s)	405, 973
SchI	GAGTC	1 cut(s)	554
ScrFI	CCNGG	3 cut(s)	132, 918, 990
SduI	GDGCHC	1 cut(s)	399
SfaNI	GCATC	1 cut(s)	315
SfcI	CTRYAG	3 cut(s)	942, 1077, 1134
SinI	GGWCC	1 cut(s)	405
Sse9I	AATT	8 cut(s)	163, 181, 425, 434, 454, 733, 981, 1139
SsiI	CCGC	5 cut(s)	36, 329, 444, 588, 1101
SstI	GAGCTC	1 cut(s)	399
StyD4I	CCNGG	3 cut(s)	130, 916, 988
TaaI	ACNGT	2 cut(s)	140, 692
TaiI	ACGT	1 cut(s)	928
TaqI	TCGA	6 cut(s)	179, 309, 399, 420, 438, 731
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	8 cut(s)	163, 181, 425, 434, 454, 733, 981, 1139
TauI	GCSGC	2 cut(s)	39, 591
TfiI	GAWTC	7 cut(s)	52, 106, 604, 658, 1085, 1109, 1120
Tru1I	TTAA	4 cut(s)	192, 744, 963, 1056
Tru9I	TTAA	4 cut(s)	192, 744, 963, 1056
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	1 cut(s)	617
TseI	GCWGC	2 cut(s)	33, 585
Tsp45I	GTSAC	1 cut(s)	617
TspDTI	ATGAA	5 cut(s)	42, 1053, 1112, 1122, 1132
TspRI	CASTG	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	405
XapI	RAATTY	2 cut(s)	425, 1139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.