Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000401.1

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Reverse (-)

31505 .. 35139

Gene Structure 3635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000401.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgtttaaacatttctacttgaaaactgggcaatgcaagtatggtgcaccctgcaaatttaatcacccaaaagacatccagataccatcagccactcaagagaataaatctggcgaaactgagacagctattaagacggagggctttgaagttgccgtgaagcctcttgtttcattctctgcagcactattatattactccaaagagcttcctgtaagaccgggtgaagctgattgtccattctacctgaaaactggaaggtgggagcgagccctgctgtttgtcctcagcgctttggacaggctgagtgtgaaattccatcacccgattgataggccagcagtggcgttgtcaacaacaaagccatctcaacaagaaaatgtgaagctaacgcttgctggactacctaggagagagggtgccgttatctgtgtgtattaccttgaaactggcacatgcaagtatggtgcaacctgcagatttgaccacccacctcctggcgaagttgtagcaatggcagcttcacaagcaaaatctgattctactggaggaaaagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

186

Amino Acids

20.43

Weight (kDa)

8.98

Isoelectric Point (pI)

30.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	482
AccB1I	GGYRCC	1 cut(s)	419
AccB7I	CCANNNNNTGG	1 cut(s)	497
AcsI	RAATTY	2 cut(s)	56, 314
AfeI	AGCGCT	1 cut(s)	292
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	3 cut(s)	22, 149, 446
AjnI	CCWGG	1 cut(s)	496
AluBI	AGCT	5 cut(s)	128, 208, 230, 388, 521
AluI	AGCT	5 cut(s)	128, 208, 230, 388, 521
Alw21I	GWGCWC	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	116
Alw44I	GTGCAC	1 cut(s)	45
Aor51HI	AGCGCT	1 cut(s)	292
AoxI	GGCC	1 cut(s)	335
ApaLI	GTGCAC	1 cut(s)	45
ApeKI	GCWGC	2 cut(s)	182, 518
ApoI	RAATTY	2 cut(s)	56, 314
AspA2I	CCTAGG	1 cut(s)	407
AspLEI	GCGC	1 cut(s)	293
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	3 cut(s)	56, 236, 314
AvrII	CCTAGG	1 cut(s)	407
BaeGI	GKGCMC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	419
BanII	GRGCYC	1 cut(s)	274
Bbv12I	GWGCWC	1 cut(s)	49
BbvCI	CCTCAGC	1 cut(s)	287
BbvI	GCAGC	2 cut(s)	194, 530
BccI	CCATC	3 cut(s)	94, 327, 373
BceAI	ACGGC	2 cut(s)	140, 407
BciT130I	CCWGG	1 cut(s)	498
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	2 cut(s)	180, 475
BfoI	RGCGCY	1 cut(s)	294
BfuAI	ACCTGC	1 cut(s)	482
BisI	GCNGC	2 cut(s)	183, 519
BlnI	CCTAGG	1 cut(s)	407
BlsI	GCNGC	2 cut(s)	184, 520
Bme1390I	CCNGG	2 cut(s)	222, 498
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	2 cut(s)	222, 498
BmrI	ACTGGG	1 cut(s)	36
BmuI	ACTGGG	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	407
BsaXI	ACNNNNNCTCC	2 cut(s)	403, 433
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse1I	ACTGG	4 cut(s)	31, 259, 454, 550
Bse3DI	GCAATG	2 cut(s)	38, 519
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	407
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMI	GCAATG	2 cut(s)	38, 519
BseMII	CTCAG	3 cut(s)	111, 296, 301
BseNI	ACTGG	4 cut(s)	31, 259, 454, 550
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	194, 530
BshFI	GGCC	1 cut(s)	337
BshNI	GGYRCC	1 cut(s)	419
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	337
Bsp1286I	GDGCHC	2 cut(s)	49, 274
BspANI	GGCC	1 cut(s)	337
BspCNI	CTCAG	3 cut(s)	112, 297, 300
BspLI	GGNNCC	1 cut(s)	421
BspMAI	CTGCAG	2 cut(s)	184, 479
BspMI	ACCTGC	1 cut(s)	482
BspT107I	GGYRCC	1 cut(s)	419
BsrDI	GCAATG	2 cut(s)	38, 519
BsrI	ACTGG	4 cut(s)	31, 259, 454, 550
BssECI	CCNNGG	1 cut(s)	407
BssT1I	CCWWGG	1 cut(s)	407
Bst2UI	CCWGG	1 cut(s)	498
BstC8I	GCNNGC	3 cut(s)	270, 339, 396
BstDEI	CTNAG	3 cut(s)	120, 287, 305
BstF5I	GGATG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	293
BstMAI	GTCTC	1 cut(s)	116
BstMWI	GCNNNNNNNGC	3 cut(s)	274, 518, 527
BstNI	CCWGG	1 cut(s)	498
BstNSI	RCATGY	1 cut(s)	459
BstSCI	CCNGG	2 cut(s)	220, 496
BstSFI	CTRYAG	2 cut(s)	180, 475
BstSLI	GKGCMC	1 cut(s)	49
BstV1I	GCAGC	2 cut(s)	194, 530
BsuRI	GGCC	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	75
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	348
BveI	ACCTGC	1 cut(s)	482
Cac8I	GCNNGC	3 cut(s)	270, 339, 396
CfoI	GCGC	1 cut(s)	293
CviAII	CATG	1 cut(s)	456
DdeI	CTNAG	3 cut(s)	120, 287, 305
DraI	TTTAAA	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	407
Eco24I	GRGCYC	1 cut(s)	274
Eco47III	AGCGCT	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	407
EcoT38I	GRGCYC	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	407
FaeI	CATG	1 cut(s)	459
FaiI	YATR	5 cut(s)	42, 193, 457, 465, 559
FatI	CATG	1 cut(s)	455
Fnu4HI	GCNGC	2 cut(s)	183, 519
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	274
Fsp4HI	GCNGC	2 cut(s)	183, 519
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	2 cut(s)	183, 519
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	337
HapII	CCGG	1 cut(s)	221
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	1 cut(s)	459
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HincII	GTYRAC	1 cut(s)	354
HindII	GTYRAC	1 cut(s)	354
HinfI	GANTC	1 cut(s)	539
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	3 cut(s)	56, 236, 314
Hpy166II	GTNNAC	2 cut(s)	47, 354
Hpy188I	TCNGA	1 cut(s)	538
Hpy188III	TCNNGA	2 cut(s)	79, 98
Hpy8I	GTNNAC	2 cut(s)	47, 354
HpyAV	CCTTC	1 cut(s)	252
HpyCH4V	TGCA	7 cut(s)	36, 47, 54, 182, 459, 470, 477
HpyF10VI	GCNNNNNNNGC	3 cut(s)	274, 518, 527
HpyF3I	CTNAG	3 cut(s)	120, 287, 305
Hsp92II	CATG	1 cut(s)	459
HspAI	GCGC	1 cut(s)	291
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	2 cut(s)	194, 530
MaeI	CTAG	1 cut(s)	408
MhlI	GDGCHC	2 cut(s)	49, 274
MluCI	AATT	2 cut(s)	56, 314
MnlI	CCTC	6 cut(s)	133, 174, 296, 409, 504, 542
MseI	TTAA	3 cut(s)	6, 60, 132
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	2 cut(s)	222, 498
MssI	GTTTAAAC	1 cut(s)	7
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	3 cut(s)	274, 518, 527
NciI	CCSGG	1 cut(s)	222
NlaIII	CATG	1 cut(s)	459
NlaIV	GGNNCC	1 cut(s)	421
NspI	RCATGY	1 cut(s)	459
PfeI	GAWTC	1 cut(s)	539
PflMI	CCANNNNNTGG	1 cut(s)	497
PkrI	GCNGC	2 cut(s)	184, 520
PmeI	GTTTAAAC	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	1 cut(s)	421
PstI	CTGCAG	2 cut(s)	184, 479
SaqAI	TTAA	3 cut(s)	6, 60, 132
SatI	GCNGC	2 cut(s)	183, 519
ScrFI	CCNGG	2 cut(s)	222, 498
SduI	GDGCHC	2 cut(s)	49, 274
SfcI	CTRYAG	2 cut(s)	180, 475
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	2 cut(s)	56, 314
SspMI	CTAG	1 cut(s)	408
StyD4I	CCNGG	2 cut(s)	220, 496
StyI	CCWWGG	1 cut(s)	407
TasI	AATT	2 cut(s)	56, 314
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	3 cut(s)	6, 60, 132
Tru9I	TTAA	3 cut(s)	6, 60, 132
TscAI	CASTG	1 cut(s)	348
TseI	GCWGC	2 cut(s)	182, 518
TspDTI	ATGAA	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	348
Van91I	CCANNNNNTGG	1 cut(s)	497
VneI	GTGCAC	1 cut(s)	45
XapI	RAATTY	2 cut(s)	56, 314
XceI	RCATGY	1 cut(s)	459
XcmI	CCANNNNNNNNNTGG	1 cut(s)	494
XmaJI	CCTAGG	1 cut(s)	407
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.