Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Reverse (-)

16671934 .. 16673080

Gene Structure 1147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG160400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTTATTATATGCACGTTGCAGGTGGGAGCGAGCCCTACTGTTTATCCTCAGCGCTTTGGACAGGCTGAGTGTGAAATTCCATCACCCGATTGATAGGCCAGCAGTGGCGTTGTCAACAACAAAGCCATCTCAACAAGAAAATGTGAAGCTAACACTTGCTGGACTACCTAGGAGAGAGGGTGCCGTTATGTGTGTGTGTTACCTTAAAACTGGCACATGCAAGTATGGTGCAACCTGCAGATTTGAGTGCCCACCTCCTGGCGAAGTTGTAGCAATGGCAGCTTCACAAGCAAAATCTGATTCTACTGGAGGGAAAGCATTAGCAGCTGAATCCACACAGGAACAGCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

118

Amino Acids

12.87

Weight (kDa)

9.02

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	12
Acc36I	ACCTGC	2 cut(s)	12, 245
AccB1I	GGYRCC	1 cut(s)	182
AccB7I	CCANNNNNTGG	1 cut(s)	260
AcsI	RAATTY	1 cut(s)	77
AfeI	AGCGCT	1 cut(s)	55
AfiI	CCNNNNNNNGG	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	3 cut(s)	151, 284, 329
AluI	AGCT	3 cut(s)	151, 284, 329
Aor51HI	AGCGCT	1 cut(s)	55
AoxI	GGCC	1 cut(s)	98
ApeKI	GCWGC	3 cut(s)	281, 326, 349
ApoI	RAATTY	1 cut(s)	77
AspA2I	CCTAGG	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	77
AvrII	CCTAGG	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	37
BbvCI	CCTCAGC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	293, 338
BccI	CCATC	2 cut(s)	90, 136
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	261
BfaI	CTAG	1 cut(s)	171
BfmI	CTRYAG	1 cut(s)	238
BfoI	RGCGCY	1 cut(s)	57
BfuAI	ACCTGC	2 cut(s)	12, 245
BisI	GCNGC	3 cut(s)	282, 327, 350
BlnI	CCTAGG	1 cut(s)	170
BlsI	GCNGC	3 cut(s)	283, 328, 351
Bme1390I	CCNGG	1 cut(s)	261
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	170
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse1I	ACTGG	2 cut(s)	217, 313
Bse3DI	GCAATG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	170
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	2 cut(s)	59, 64
BseNI	ACTGG	2 cut(s)	217, 313
BseSI	GKGCMC	1 cut(s)	254
BseXI	GCAGC	2 cut(s)	293, 338
BshFI	GGCC	1 cut(s)	100
BshNI	GGYRCC	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	260
BsnI	GGCC	1 cut(s)	100
Bsp1286I	GDGCHC	2 cut(s)	37, 254
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	2 cut(s)	60, 63
BspLI	GGNNCC	1 cut(s)	184
BspMAI	CTGCAG	1 cut(s)	242
BspMI	ACCTGC	2 cut(s)	12, 245
BspT107I	GGYRCC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	2 cut(s)	217, 313
BssECI	CCNNGG	1 cut(s)	170
BssT1I	CCWWGG	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	33, 102
BstDEI	CTNAG	2 cut(s)	50, 68
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstMWI	GCNNNNNNNGC	3 cut(s)	281, 290, 326
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	254
BstV1I	GCAGC	2 cut(s)	293, 338
BsuRI	GGCC	1 cut(s)	100
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
BveI	ACCTGC	2 cut(s)	12, 245
Cac8I	GCNNGC	2 cut(s)	33, 102
CfoI	GCGC	1 cut(s)	56
CviAII	CATG	1 cut(s)	219
CviJI	RGCY	7 cut(s)	35, 67, 100, 127, 151, 284, 329
CviKI_1	RGCY	7 cut(s)	35, 67, 100, 127, 151, 284, 329
DdeI	CTNAG	2 cut(s)	50, 68
Eco130I	CCWWGG	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	37
Eco47III	AGCGCT	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	170
FaeI	CATG	1 cut(s)	222
FaiI	YATR	5 cut(s)	10, 12, 191, 220, 228
FatI	CATG	1 cut(s)	218
Fnu4HI	GCNGC	3 cut(s)	282, 327, 350
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	3 cut(s)	282, 327, 350
FspBI	CTAG	1 cut(s)	171
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	3 cut(s)	282, 327, 350
GsuI	CTGGAG	1 cut(s)	330
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	222
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	2 cut(s)	302, 332
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	1 cut(s)	301
Hpy8I	GTNNAC	1 cut(s)	117
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	5 cut(s)	14, 21, 222, 233, 240
HpyF10VI	GCNNNNNNNGC	3 cut(s)	281, 290, 326
HpyF3I	CTNAG	2 cut(s)	50, 68
HpySE526I	ACGT	1 cut(s)	16
Hsp92II	CATG	1 cut(s)	222
HspAI	GCGC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	2 cut(s)	293, 338
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	1 cut(s)	200
MhlI	GDGCHC	2 cut(s)	37, 254
MluCI	AATT	1 cut(s)	77
MnlI	CCTC	4 cut(s)	59, 172, 267, 305
MseI	TTAA	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	329
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	3 cut(s)	281, 290, 326
NlaIII	CATG	1 cut(s)	222
NlaIV	GGNNCC	1 cut(s)	184
NspI	RCATGY	1 cut(s)	222
PaqCI	CACCTGC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	302, 332
PflMI	CCANNNNNTGG	1 cut(s)	260
PkrI	GCNGC	3 cut(s)	283, 328, 351
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	184
PstI	CTGCAG	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	3 cut(s)	282, 327, 350
ScrFI	CCNGG	1 cut(s)	261
SduI	GDGCHC	2 cut(s)	37, 254
SetI	ASST	9 cut(s)	19, 26, 153, 172, 207, 239, 259, 286, 331
SfcI	CTRYAG	1 cut(s)	238
Sse9I	AATT	1 cut(s)	77
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	42
TaiI	ACGT	1 cut(s)	19
TasI	AATT	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	302, 332
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	111
TseI	GCWGC	3 cut(s)	281, 326, 349
TspRI	CASTG	1 cut(s)	111
Van91I	CCANNNNNTGG	1 cut(s)	260
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	1 cut(s)	222
XmaJI	CCTAGG	1 cut(s)	170
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.