Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Reverse (-)

64433122 .. 64434741

Gene Structure 1620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035293

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGTTCCACTTGTTGCTCCAAGTGAGCCCCTTCCTAAGAGACCTGGAGCGCCAGATTGTCCATACTTTCTAAAAACTCAAAGATGCAAGTTTCATCACCCAAAGGACAAACTGGCTACTGCGGGTGCTTCAGAAAATGGTGATGTTTATGCCTTACCCGAGAGGCCTTCGGAACCTGCATGTGCATTCTACTTGAGAACTGGGCAATGCAAATATGGTGCAACCTGCAAATTTAATCACCCAAAAGACATCCAGATACAATCAGCCACTCAAGAGAATAAATCTGGCAAAACTGAGACAGCTCTTAAGACGGAGGGCAGTGAAGTTGCCGTGAAGCCTCTTGTTTCATTCACTCTAGCACTATTATATAACTCCAAAGAGCTTCCTGTGAGACCGGGTGAAGCTGATTGTCTATTCTACCTAAAACCTGGAAGGTCATATGGGGCCACTTGCCGGTACAATCACCCTGATAGATATAATATCAATCCACTTGCTGCTGCAATCAGCTATCCTCTTTCAGCGCCTTCAGCTGCAGGTTTTAACATAGGAGTTGCTAATCCAGCTGCCTTAACTTATCAAACTCTGGCACATCCAACGCACTATCAAGTCAAAGGTGCAACCCCTACGGCCCTACCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

214

Amino Acids

23.03

Weight (kDa)

9.01

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	58 - 82	1.1e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	184, 233, 524
AciI	CCGC	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	2 cut(s)	114, 510
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	1 cut(s)	453
AflII	CTTAAG	1 cut(s)	305
AjnI	CCWGG	2 cut(s)	43, 427
AluBI	AGCT	6 cut(s)	302, 382, 404, 507, 530, 563
AluI	AGCT	6 cut(s)	302, 382, 404, 507, 530, 563
Alw26I	GTCTC	3 cut(s)	34, 290, 385
Ama87I	CYCGRG	1 cut(s)	158
AoxI	GGCC	3 cut(s)	164, 444, 627
ApeKI	GCWGC	4 cut(s)	494, 497, 530, 563
ApoI	RAATTY	1 cut(s)	230
AspLEI	GCGC	2 cut(s)	52, 523
AspS9I	GGNCC	2 cut(s)	444, 628
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	5 cut(s)	89, 152, 230, 410, 455
AvaI	CYCGRG	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	30
BbvI	GCAGC	4 cut(s)	481, 484, 517, 550
BceAI	ACGGC	1 cut(s)	314
BciT130I	CCWGG	2 cut(s)	45, 429
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	3 cut(s)	34, 290, 385
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	1 cut(s)	531
BfoI	RGCGCY	2 cut(s)	53, 524
BfrI	CTTAAG	1 cut(s)	305
BfuAI	ACCTGC	3 cut(s)	184, 233, 524
BisI	GCNGC	4 cut(s)	495, 498, 531, 564
BlsI	GCNGC	4 cut(s)	496, 499, 532, 565
Bme1390I	CCNGG	3 cut(s)	45, 396, 429
BmeT110I	CYCGRG	1 cut(s)	158
BmgT120I	GGNCC	2 cut(s)	444, 628
BmiI	GGNNCC	3 cut(s)	6, 174, 445
BmrFI	CCNGG	3 cut(s)	45, 396, 429
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	1 cut(s)	74
BmuI	ACTGGG	1 cut(s)	210
BpmI	CTGGAG	1 cut(s)	66
BpuEI	CTTGAG	2 cut(s)	214, 255
BpuMI	CCSGG	1 cut(s)	396
BsaI	GGTCTC	2 cut(s)	34, 385
Bsc4I	CCNNNNNNNGG	1 cut(s)	453
Bse118I	RCCGGY	1 cut(s)	453
Bse1I	ACTGG	2 cut(s)	117, 205
Bse3DI	GCAATG	1 cut(s)	212
BseBI	CCWGG	2 cut(s)	45, 429
BseGI	GGATG	2 cut(s)	249, 589
BseLI	CCNNNNNNNGG	1 cut(s)	453
BseMI	GCAATG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	2 cut(s)	117, 205
BseXI	GCAGC	4 cut(s)	481, 484, 517, 550
BshFI	GGCC	3 cut(s)	166, 446, 629
BsiHKCI	CYCGRG	1 cut(s)	158
BsiSI	CCGG	2 cut(s)	395, 454
BslI	CCNNNNNNNGG	1 cut(s)	453
BsmAI	GTCTC	3 cut(s)	34, 290, 385
BsmI	GAATGC	1 cut(s)	185
BsnI	GGCC	3 cut(s)	166, 446, 629
Bso31I	GGTCTC	2 cut(s)	34, 385
BsoBI	CYCGRG	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	30
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	3 cut(s)	166, 446, 629
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	3 cut(s)	6, 174, 445
BspMAI	CTGCAG	1 cut(s)	535
BspMI	ACCTGC	3 cut(s)	184, 233, 524
BspTI	CTTAAG	1 cut(s)	305
BspTNI	GGTCTC	2 cut(s)	34, 385
BsrDI	GCAATG	1 cut(s)	212
BsrFI	RCCGGY	1 cut(s)	453
BsrI	ACTGG	2 cut(s)	117, 205
BssAI	RCCGGY	1 cut(s)	453
Bst2UI	CCWGG	2 cut(s)	45, 429
BstAFI	CTTAAG	1 cut(s)	305
BstDEI	CTNAG	2 cut(s)	36, 294
BstF5I	GGATG	2 cut(s)	249, 589
BstH2I	RGCGCY	2 cut(s)	53, 524
BstHHI	GCGC	2 cut(s)	52, 523
BstMAI	GTCTC	3 cut(s)	34, 290, 385
BstMWI	GCNNNNNNNGC	2 cut(s)	527, 560
BstNI	CCWGG	2 cut(s)	45, 429
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	3 cut(s)	43, 394, 427
BstSFI	CTRYAG	1 cut(s)	531
BstV1I	GCAGC	4 cut(s)	481, 484, 517, 550
BsuRI	GGCC	3 cut(s)	166, 446, 629
BtsCI	GGATG	2 cut(s)	249, 589
BtsI	GCAGTG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	325
BveI	ACCTGC	3 cut(s)	184, 233, 524
CfoI	GCGC	2 cut(s)	52, 523
Cfr10I	RCCGGY	1 cut(s)	453
Cfr13I	GGNCC	2 cut(s)	444, 628
Csp6I	GTAC	1 cut(s)	457
CviAII	CATG	1 cut(s)	180
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	2 cut(s)	36, 294
Eco147I	AGGCCT	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	30
Eco31I	GGTCTC	2 cut(s)	34, 385
Eco57I	CTGAAG	2 cut(s)	114, 510
Eco88I	CYCGRG	1 cut(s)	158
EcoRII	CCWGG	2 cut(s)	43, 427
EcoT38I	GRGCYC	1 cut(s)	30
FaeI	CATG	1 cut(s)	183
FatI	CATG	1 cut(s)	179
FauI	CCCGC	1 cut(s)	115
FauNDI	CATATG	1 cut(s)	439
Fnu4HI	GCNGC	4 cut(s)	495, 498, 531, 564
FokI	GGATG	2 cut(s)	236, 576
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	4 cut(s)	495, 498, 531, 564
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	2 cut(s)	51, 522
GluI	GCNGC	4 cut(s)	495, 498, 531, 564
GsuI	CTGGAG	1 cut(s)	66
HaeII	RGCGCY	2 cut(s)	53, 524
HaeIII	GGCC	3 cut(s)	166, 446, 629
HapII	CCGG	2 cut(s)	395, 454
HhaI	GCGC	2 cut(s)	52, 523
Hin1II	CATG	1 cut(s)	183
Hin6I	GCGC	2 cut(s)	50, 521
HinP1I	GCGC	2 cut(s)	50, 521
HpaII	CCGG	2 cut(s)	395, 454
HphI	GGTGA	5 cut(s)	89, 152, 230, 410, 455
Hpy188I	TCNGA	2 cut(s)	133, 172
Hpy188III	TCNNGA	2 cut(s)	253, 272
HpyAV	CCTTC	4 cut(s)	41, 177, 426, 534
HpyCH4V	TGCA	9 cut(s)	87, 179, 185, 210, 221, 228, 500, 533, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	527, 560
HpyF3I	CTNAG	2 cut(s)	36, 294
Hsp92II	CATG	1 cut(s)	183
HspAI	GCGC	2 cut(s)	50, 521
LmnI	GCTCC	2 cut(s)	22, 47
Lsp1109I	GCAGC	4 cut(s)	481, 484, 517, 550
LweI	GCATC	1 cut(s)	74
MaeI	CTAG	1 cut(s)	356
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	1 cut(s)	230
MmeI	TCCRAC	1 cut(s)	617
MnlI	CCTC	4 cut(s)	156, 307, 348, 522
MseI	TTAA	4 cut(s)	234, 306, 540, 569
MspA1I	CMGCKG	2 cut(s)	530, 563
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	2 cut(s)	395, 454
MspR9I	CCNGG	3 cut(s)	45, 396, 429
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	2 cut(s)	45, 429
MwoI	GCNNNNNNNGC	2 cut(s)	527, 560
NciI	CCSGG	1 cut(s)	396
NdeI	CATATG	1 cut(s)	439
NlaIII	CATG	1 cut(s)	183
NlaIV	GGNNCC	3 cut(s)	6, 174, 445
NspI	RCATGY	1 cut(s)	183
PceI	AGGCCT	1 cut(s)	166
PctI	GAATGC	1 cut(s)	185
PkrI	GCNGC	4 cut(s)	496, 499, 532, 565
Psp6I	CCWGG	2 cut(s)	43, 427
PspGI	CCWGG	2 cut(s)	43, 427
PspN4I	GGNNCC	3 cut(s)	6, 174, 445
PspPI	GGNCC	2 cut(s)	444, 628
PstI	CTGCAG	1 cut(s)	535
PvuII	CAGCTG	2 cut(s)	530, 563
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
SaqAI	TTAA	4 cut(s)	234, 306, 540, 569
SatI	GCNGC	4 cut(s)	495, 498, 531, 564
Sau96I	GGNCC	2 cut(s)	444, 628
ScrFI	CCNGG	3 cut(s)	45, 396, 429
SduI	GDGCHC	1 cut(s)	30
SfaNI	GCATC	1 cut(s)	74
SfcI	CTRYAG	1 cut(s)	531
SmlI	CTYRAG	3 cut(s)	193, 270, 305
SmoI	CTYRAG	3 cut(s)	193, 270, 305
Sse9I	AATT	1 cut(s)	230
SseBI	AGGCCT	1 cut(s)	166
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	1 cut(s)	356
StuI	AGGCCT	1 cut(s)	166
StyD4I	CCNGG	3 cut(s)	43, 394, 427
TasI	AATT	1 cut(s)	230
Tru1I	TTAA	4 cut(s)	234, 306, 540, 569
Tru9I	TTAA	4 cut(s)	234, 306, 540, 569
TscAI	CASTG	1 cut(s)	325
TseI	GCWGC	4 cut(s)	494, 497, 530, 563
TspDTI	ATGAA	2 cut(s)	83, 336
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	325
Vha464I	CTTAAG	1 cut(s)	305
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	1 cut(s)	183
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.