RLG00000032674

ABC transporter D family member 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000820
Physical Location & Seq
Reverse (-)
17699930 .. 17705602
5673 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032674

Sequence Viewer

Length: 1293 bp
ATGCTCTGGTCCTTCCCTGTTGAATTTGCAAACCTCAAGTCTTTGGAAGAACTTGGTTTGAGTGATAATTTTCTCGAAGGTCAAACTCCCAAAACCAGTTTCCATTTTACACCGAGATTGACTCTGTACCGCCGCCACCCCGTGCTCCTCCAACCCTGGAAAAGCAAAGAGAGGATTCGAATTTGCAGACGCTGCTCCGGAGATTCTGGAAGAGAGGCGGCGCCGTACTGGTCCTCCGACGACAAAGTCCAGGCCAGGATGCAGCTGGGAGGAGTCTTCCTTCTCACTCTCGCCACCACCGGGATCAGCGTCGGCTTCAATTTTCTGGGCCGGGACTTCTACAATGTCCTTGCCAATAAGGACCAAGAGCAGTTCATGAAGCAACTGCTTTACTACCTGGGTGCCTTTGCTGGTGGAATTCCGATTTTTGTGTTGCGGAATTATGCAAGAGAAACTCTTTCTTTGAGGTGGAGATCTTGGATGGAGCGTTATTACATTGTCCGTTACCTGAGCAACCAAGCATTTTACAGAATTCAATCCCAATCAATCATTGATAATCCAGATCAGCGAATTGTTGATGATCTAAGTTCTTTCACAGGGACAGCCCTGTCATTCTCTTTAACACTCTTCAATGCTGTGATAGATCTCATATCATTCAGTAACATCTTATTTGGTATCTATCCTCCGCTGTTTGTTGTTCTTCTAGTATATTTGATTGGTGGAACAGTGATCAGTGTCTTTATTGGAAGGGGTTTGGTGACATTAAACTTCCTGCAAGAGAAAAAGGAAGCAGATTTTGGTTATGGACTTGTCCACGTTCGAGAAAATGCTGAATCAATAGCTTTCTATAGTGGTGAAGACAATGAAATGCAAATTTTGCTGCAACGCTTCAAAAGTGCTTTTGAGAATCTAACTGTAAATTTGATGATTATTTACAAGGACCAAGAGCAATTCATGAAGCAACTGCTTTACTGCCTGGGTGCCTTTGCTGGTGGAATTCCGTATTATATGAAGACTGGAGAATGTAAGTATGGTGCACAATGCAGATTCCATCACCCAATTGATAGGCCAGCAGTGGCATTGTCAACAACAAAGCCATCTCAACAAGAAAATGTGAAGCTAACGCTTGCTGGACTACCTAGGAGAGAGGGTGGCGTTATCTATGTGTATTACCTTAAAACCGGCGCATGCAAGTATGGTGCAACCTGCAGATTTGACCACCCACCTTCTGGTGAAGTTGTAGCAATGGCAGCTTCACTAGGAAAATCTGATTCTACCGGAGGAAAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran

Protein Analysis

431

Amino Acids

48.69

Weight (kDa)

8.97

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane_2 PF06472 83 - 327 4.5e-44 ABC transporter transmembrane region 2
SbmA_BacA PF05992 112 - 309 4.6e-09 SbmA/BacA-like family
zf-CCCH PF00642 334 - 353 8.8e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 390 - 409 1.7e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 245, 607
Acc36I ACCTGC 1 cut(s) 1214
AccB1I GGYRCC 3 cut(s) 220, 401, 980
AccB7I CCANNNNNTGG 1 cut(s) 1229
AccIII TCCGGA 1 cut(s) 197
AciI CCGC 5 cut(s) 130, 133, 218, 436, 686
AclWI GGATC 1 cut(s) 311
AcsI RAATTY 7 cut(s) 23, 180, 417, 531, 873, 919, 996
AcyI GRCGYC 1 cut(s) 221
AdeI CACNNNGTG 1 cut(s) 142
AfaI GTAC 2 cut(s) 128, 227
AfiI CCNNNNNNNGG 2 cut(s) 300, 1229
AgsI TTSAA 5 cut(s) 23, 319, 536, 631, 892
AjnI CCWGG 5 cut(s) 155, 249, 254, 396, 975
AjuI GAANNNNNNNTTGG 4 cut(s) 83, 115, 780, 812
AluBI AGCT 4 cut(s) 265, 842, 1120, 1253
AluI AGCT 4 cut(s) 265, 842, 1120, 1253
Alw21I GWGCWC 2 cut(s) 147, 1039
Alw44I GTGCAC 1 cut(s) 1035
AlwI GGATC 1 cut(s) 311
AlwNI CAGNNNCTG 1 cut(s) 192
Aor13HI TCCGGA 1 cut(s) 197
AoxI GGCC 3 cut(s) 252, 328, 1067
ApaLI GTGCAC 1 cut(s) 1035
ApeKI GCWGC 4 cut(s) 192, 262, 880, 1250
ApoI RAATTY 7 cut(s) 23, 180, 417, 531, 873, 919, 996
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
AspA2I CCTAGG 1 cut(s) 1139
AspLEI GCGC 2 cut(s) 223, 1187
AspS9I GGNCC 5 cut(s) 9, 231, 328, 361, 940
AsuC2I CCSGG 2 cut(s) 301, 332
AsuHPI GGTGA 4 cut(s) 769, 866, 1046, 1244
AsuII TTCGAA 1 cut(s) 178
AvaII GGWCC 4 cut(s) 9, 231, 361, 940
AvrII CCTAGG 1 cut(s) 1139
BaeGI GKGCMC 1 cut(s) 1039
BanI GGYRCC 3 cut(s) 220, 401, 980
BbsI GAAGAC 3 cut(s) 268, 864, 1019
Bbv12I GWGCWC 2 cut(s) 147, 1039
BbvI GCAGC 4 cut(s) 179, 274, 867, 1262
BccI CCATC 3 cut(s) 475, 1059, 1105
BceAI ACGGC 1 cut(s) 208
BciT130I CCWGG 5 cut(s) 157, 251, 256, 398, 977
BclI TGATCA 1 cut(s) 729
BcnI CCSGG 2 cut(s) 301, 332
BfaI CTAG 3 cut(s) 704, 1140, 1259
BfmI CTRYAG 2 cut(s) 847, 1207
BfoI RGCGCY 1 cut(s) 224
BfuAI ACCTGC 1 cut(s) 1214
BglII AGATCT 2 cut(s) 473, 643
BisI GCNGC 6 cut(s) 133, 193, 219, 263, 881, 1251
BlnI CCTAGG 1 cut(s) 1139
BlsI GCNGC 6 cut(s) 134, 194, 220, 264, 882, 1252
Bme1390I CCNGG 7 cut(s) 157, 251, 256, 301, 332, 398, 977
Bme18I GGWCC 4 cut(s) 9, 231, 361, 940
BmgT120I GGNCC 5 cut(s) 9, 231, 328, 361, 940
BmiI GGNNCC 3 cut(s) 222, 403, 982
BmrFI CCNGG 7 cut(s) 157, 251, 256, 301, 332, 398, 977
BmsI GCATC 1 cut(s) 249
BpiI GAAGAC 3 cut(s) 268, 864, 1019
BplI GAGNNNNNCTC 2 cut(s) 106, 138
BpmI CTGGAG 1 cut(s) 1038
Bpu10I CCTNAGC 1 cut(s) 509
Bpu14I TTCGAA 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 20
BpuMI CCSGG 2 cut(s) 301, 332
BsaHI GRCGYC 1 cut(s) 221
BsaJI CCNNGG 4 cut(s) 155, 397, 976, 1139
BsaWI WCCGGW 2 cut(s) 197, 1277
BsaXI ACNNNNNCTCC 4 cut(s) 218, 248, 1135, 1165
Bsc4I CCNNNNNNNGG 2 cut(s) 300, 1229
Bse118I RCCGGY 1 cut(s) 1181
Bse1I ACTGG 3 cut(s) 96, 233, 1021
Bse3DI GCAATG 1 cut(s) 1251
BseAI TCCGGA 1 cut(s) 197
BseBI CCWGG 5 cut(s) 157, 251, 256, 398, 977
BseDI CCNNGG 4 cut(s) 155, 397, 976, 1139
BseGI GGATG 2 cut(s) 264, 486
BseLI CCNNNNNNNGG 2 cut(s) 300, 1229
BseMI GCAATG 1 cut(s) 1251
BseMII CTCAG 1 cut(s) 500
BseNI ACTGG 3 cut(s) 96, 233, 1021
BseRI GAGGAG 2 cut(s) 137, 285
BseSI GKGCMC 1 cut(s) 1039
BseXI GCAGC 4 cut(s) 179, 274, 867, 1262
BseYI CCCAGC 1 cut(s) 265
BshFI GGCC 3 cut(s) 254, 330, 1069
BshNI GGYRCC 3 cut(s) 220, 401, 980
BsiHKAI GWGCWC 2 cut(s) 147, 1039
BsiSI CCGG 5 cut(s) 198, 300, 331, 1182, 1278
BslFI GGGAC 2 cut(s) 347, 613
BslI CCNNNNNNNGG 2 cut(s) 300, 1229
BsmFI GGGAC 2 cut(s) 347, 613
BsnI GGCC 3 cut(s) 254, 330, 1069
Bsp119I TTCGAA 1 cut(s) 178
Bsp1286I GDGCHC 2 cut(s) 147, 1039
Bsp13I TCCGGA 1 cut(s) 197
Bsp143I GATC 6 cut(s) 303, 473, 562, 580, 643, 729
BspACI CCGC 5 cut(s) 130, 133, 218, 436, 686
BspANI GGCC 3 cut(s) 254, 330, 1069
BspCNI CTCAG 1 cut(s) 501
BspEI TCCGGA 1 cut(s) 197
BspHI TCATGA 2 cut(s) 375, 954
BspLI GGNNCC 3 cut(s) 222, 403, 982
BspMAI CTGCAG 1 cut(s) 1211
BspMI ACCTGC 1 cut(s) 1214
BspPI GGATC 1 cut(s) 311
BspT104I TTCGAA 1 cut(s) 178
BspT107I GGYRCC 3 cut(s) 220, 401, 980
BsrDI GCAATG 1 cut(s) 1251
BsrFI RCCGGY 1 cut(s) 1181
BsrI ACTGG 3 cut(s) 96, 233, 1021
BssAI RCCGGY 1 cut(s) 1181
BssECI CCNNGG 4 cut(s) 155, 397, 976, 1139
BssMI GATC 6 cut(s) 303, 473, 562, 580, 643, 729
BssNI GRCGYC 1 cut(s) 221
BssT1I CCWWGG 1 cut(s) 1139
Bst2UI CCWGG 5 cut(s) 157, 251, 256, 398, 977
Bst4CI ACNGT 2 cut(s) 727, 916
Bst6I CTCTTC 2 cut(s) 205, 632
BstACI GRCGYC 1 cut(s) 221
BstAPI GCANNNNNTGC 2 cut(s) 192, 877
BstBI TTCGAA 1 cut(s) 178
BstC8I GCNNGC 3 cut(s) 1071, 1128, 1189
BstDEI CTNAG 2 cut(s) 509, 584
BstF5I GGATG 2 cut(s) 264, 486
BstH2I RGCGCY 1 cut(s) 224
BstHHI GCGC 2 cut(s) 223, 1187
BstKTI GATC 6 cut(s) 306, 476, 565, 583, 646, 732
BstMBI GATC 6 cut(s) 303, 473, 562, 580, 643, 729
BstMWI GCNNNNNNNGC 3 cut(s) 192, 877, 1250
BstNI CCWGG 5 cut(s) 157, 251, 256, 398, 977
BstNSI RCATGY 1 cut(s) 1191
BstSCI CCNGG 7 cut(s) 155, 249, 254, 299, 330, 396, 975
BstSFI CTRYAG 2 cut(s) 847, 1207
BstSLI GKGCMC 1 cut(s) 1039
BstV1I GCAGC 4 cut(s) 179, 274, 867, 1262
BstV2I GAAGAC 3 cut(s) 268, 864, 1019
BstX2I RGATCY 2 cut(s) 473, 643
BstYI RGATCY 2 cut(s) 473, 643
BsuRI GGCC 3 cut(s) 254, 330, 1069
BtsCI GGATG 2 cut(s) 264, 486
BtsI GCAGTG 1 cut(s) 1080
BtsIMutI CAGTG 3 cut(s) 732, 739, 1080
BveI ACCTGC 1 cut(s) 1214
Cac8I GCNNGC 3 cut(s) 1071, 1128, 1189
CaiI CAGNNNCTG 1 cut(s) 192
CciI TCATGA 2 cut(s) 375, 954
CfoI GCGC 2 cut(s) 223, 1187
Cfr10I RCCGGY 1 cut(s) 1181
Cfr13I GGNCC 5 cut(s) 9, 231, 328, 361, 940
CseI GACGC 2 cut(s) 198, 298
Csp6I GTAC 2 cut(s) 127, 226
CviAII CATG 3 cut(s) 376, 955, 1188
CviQI GTAC 2 cut(s) 127, 226
DdeI CTNAG 2 cut(s) 509, 584
DinI GGCGCC 1 cut(s) 222
DpnI GATC 6 cut(s) 305, 475, 564, 582, 645, 731
DpnII GATC 6 cut(s) 303, 473, 562, 580, 643, 729
DraIII CACNNNGTG 1 cut(s) 142
DrdI GACNNNNNNGTC 2 cut(s) 245, 607
DseDI GACNNNNNNGTC 2 cut(s) 245, 607
Eam1104I CTCTTC 2 cut(s) 205, 632
EarI CTCTTC 2 cut(s) 205, 632
Eco130I CCWWGG 1 cut(s) 1139
Eco47I GGWCC 4 cut(s) 9, 231, 361, 940
EcoRI GAATTC 3 cut(s) 417, 531, 996
EcoRII CCWGG 5 cut(s) 155, 249, 254, 396, 975
EcoT14I CCWWGG 1 cut(s) 1139
EgeI GGCGCC 1 cut(s) 222
EheI GGCGCC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 1139
FaeI CATG 3 cut(s) 379, 958, 1191
FaqI GGGAC 2 cut(s) 347, 613
FatI CATG 3 cut(s) 375, 954, 1187
FbaI TGATCA 1 cut(s) 729
Fnu4HI GCNGC 6 cut(s) 133, 193, 219, 263, 881, 1251
FokI GGATG 2 cut(s) 271, 493
Fsp4HI GCNGC 6 cut(s) 133, 193, 219, 263, 881, 1251
FspBI CTAG 3 cut(s) 704, 1140, 1259
GlaI GCGC 2 cut(s) 222, 1186
GluI GCNGC 6 cut(s) 133, 193, 219, 263, 881, 1251
GsaI CCCAGC 1 cut(s) 269
GsuI CTGGAG 1 cut(s) 1038
HaeII RGCGCY 1 cut(s) 224
HaeIII GGCC 3 cut(s) 254, 330, 1069
HapII CCGG 5 cut(s) 198, 300, 331, 1182, 1278
HgaI GACGC 2 cut(s) 198, 298
HhaI GCGC 2 cut(s) 223, 1187
Hin1I GRCGYC 1 cut(s) 221
Hin1II CATG 3 cut(s) 379, 958, 1191
Hin6I GCGC 2 cut(s) 221, 1185
HinP1I GCGC 2 cut(s) 221, 1185
HincII GTYRAC 1 cut(s) 1086
HindII GTYRAC 1 cut(s) 1086
HinfI GANTC 8 cut(s) 121, 175, 203, 273, 833, 907, 1047, 1271
HpaII CCGG 5 cut(s) 198, 300, 331, 1182, 1278
HphI GGTGA 4 cut(s) 769, 866, 1046, 1244
Hpy166II GTNNAC 3 cut(s) 814, 1037, 1086
Hpy188I TCNGA 3 cut(s) 238, 423, 1270
Hpy188III TCNNGA 7 cut(s) 74, 198, 207, 376, 560, 821, 955
Hpy8I GTNNAC 3 cut(s) 814, 1037, 1086
Hpy99I CGWCG 2 cut(s) 242, 314
HpyAV CCTTC 5 cut(s) 22, 71, 290, 741, 1236
HpyCH4III ACNGT 2 cut(s) 727, 916
HpyCH4IV ACGT 1 cut(s) 816
HpyF10VI GCNNNNNNNGC 3 cut(s) 192, 877, 1250
HpyF3I CTNAG 2 cut(s) 509, 584
HpySE526I ACGT 1 cut(s) 816
Hsp92I GRCGYC 1 cut(s) 221
Hsp92II CATG 3 cut(s) 379, 958, 1191
HspAI GCGC 2 cut(s) 221, 1185
KasI GGCGCC 1 cut(s) 220
Kpn2I TCCGGA 1 cut(s) 197
Ksp22I TGATCA 1 cut(s) 729
Kzo9I GATC 6 cut(s) 303, 473, 562, 580, 643, 729
LmnI GCTCC 3 cut(s) 150, 200, 484
Lsp1109I GCAGC 4 cut(s) 179, 274, 867, 1262
LweI GCATC 1 cut(s) 249
MaeI CTAG 3 cut(s) 704, 1140, 1259
MaeII ACGT 1 cut(s) 816
MaeIII GTNAC 3 cut(s) 503, 659, 757
MalI GATC 6 cut(s) 305, 475, 564, 582, 645, 731
MboI GATC 6 cut(s) 303, 473, 562, 580, 643, 729
MboII GAAGA 7 cut(s) 59, 222, 268, 619, 692, 869, 1024
MfeI CAATTG 1 cut(s) 1059
MflI RGATCY 2 cut(s) 473, 643
MhlI GDGCHC 2 cut(s) 147, 1039
Mly113I GGCGCC 1 cut(s) 221
MlyI GAGTC 2 cut(s) 115, 282
MmeI TCCRAC 2 cut(s) 175, 261
MroI TCCGGA 1 cut(s) 197
MseI TTAA 3 cut(s) 620, 764, 1176
MspA1I CMGCKG 2 cut(s) 265, 688
MspI CCGG 5 cut(s) 198, 300, 331, 1182, 1278
MspR9I CCNGG 7 cut(s) 157, 251, 256, 301, 332, 398, 977
MunI CAATTG 1 cut(s) 1059
MvaI CCWGG 5 cut(s) 157, 251, 256, 398, 977
MwoI GCNNNNNNNGC 3 cut(s) 192, 877, 1250
NarI GGCGCC 1 cut(s) 221
NciI CCSGG 2 cut(s) 301, 332
NdeII GATC 6 cut(s) 303, 473, 562, 580, 643, 729
NlaIII CATG 3 cut(s) 379, 958, 1191
NlaIV GGNNCC 3 cut(s) 222, 403, 982
NmuCI GTSAC 1 cut(s) 757
NspI RCATGY 1 cut(s) 1191
NspV TTCGAA 1 cut(s) 178
PaeI GCATGC 1 cut(s) 1191
PagI TCATGA 2 cut(s) 375, 954
PfeI GAWTC 6 cut(s) 175, 203, 833, 907, 1047, 1271
PflFI GACNNNGTC 1 cut(s) 245
PflMI CCANNNNNTGG 1 cut(s) 1229
PkrI GCNGC 6 cut(s) 134, 194, 220, 264, 882, 1252
PleI GAGTC 2 cut(s) 115, 281
PluTI GGCGCC 1 cut(s) 224
PpsI GAGTC 2 cut(s) 115, 281
Psp6I CCWGG 5 cut(s) 155, 249, 254, 396, 975
PspFI CCCAGC 1 cut(s) 265
PspGI CCWGG 5 cut(s) 155, 249, 254, 396, 975
PspN4I GGNNCC 3 cut(s) 222, 403, 982
PspPI GGNCC 5 cut(s) 9, 231, 328, 361, 940
PstI CTGCAG 1 cut(s) 1211
PstNI CAGNNNCTG 1 cut(s) 192
PsuI RGATCY 2 cut(s) 473, 643
PsyI GACNNNGTC 1 cut(s) 245
PvuII CAGCTG 1 cut(s) 265
RsaI GTAC 2 cut(s) 128, 227
RsaNI GTAC 2 cut(s) 127, 226
SaqAI TTAA 3 cut(s) 620, 764, 1176
SatI GCNGC 6 cut(s) 133, 193, 219, 263, 881, 1251
Sau3AI GATC 6 cut(s) 303, 473, 562, 580, 643, 729
Sau96I GGNCC 5 cut(s) 9, 231, 328, 361, 940
SchI GAGTC 2 cut(s) 115, 282
ScrFI CCNGG 7 cut(s) 157, 251, 256, 301, 332, 398, 977
SduI GDGCHC 2 cut(s) 147, 1039
SfaNI GCATC 1 cut(s) 249
SfcI CTRYAG 2 cut(s) 847, 1207
SfoI GGCGCC 1 cut(s) 222
SfuI TTCGAA 1 cut(s) 178
SinI GGWCC 4 cut(s) 9, 231, 361, 940
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
SphI GCATGC 1 cut(s) 1191
SsiI CCGC 5 cut(s) 130, 133, 218, 436, 686
SspDI GGCGCC 1 cut(s) 220
SspMI CTAG 3 cut(s) 704, 1140, 1259
StyD4I CCNGG 7 cut(s) 155, 249, 254, 299, 330, 396, 975
StyI CCWWGG 1 cut(s) 1139
TaaI ACNGT 2 cut(s) 727, 916
TaiI ACGT 1 cut(s) 819
TaqI TCGA 3 cut(s) 75, 178, 820
TauI GCSGC 2 cut(s) 135, 221
TfiI GAWTC 6 cut(s) 175, 203, 833, 907, 1047, 1271
Tru1I TTAA 3 cut(s) 620, 764, 1176
Tru9I TTAA 3 cut(s) 620, 764, 1176
TscAI CASTG 3 cut(s) 732, 739, 1080
TseFI GTSAC 1 cut(s) 757
TseI GCWGC 4 cut(s) 192, 262, 880, 1250
Tsp45I GTSAC 1 cut(s) 757
TspDTI ATGAA 6 cut(s) 364, 392, 879, 943, 971, 1025
TspGWI ACGGA 2 cut(s) 491, 990
TspRI CASTG 3 cut(s) 732, 739, 1080
Tth111I GACNNNGTC 1 cut(s) 245
Van91I CCANNNNNTGG 1 cut(s) 1229
VneI GTGCAC 1 cut(s) 1035
VpaK11BI GGWCC 4 cut(s) 9, 231, 361, 940
XapI RAATTY 7 cut(s) 23, 180, 417, 531, 873, 919, 996
XceI RCATGY 1 cut(s) 1191
XcmI CCANNNNNNNNNTGG 2 cut(s) 262, 1226
XmaJI CCTAGG 1 cut(s) 1139
XspI CTAG 3 cut(s) 704, 1140, 1259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.